JASPAR: an open-access database for eukaryotic transcription factor binding profiles Export

@article{sandalin2004, abstract = {The analysis of regulatory regions in genome sequences is strongly based on the detection of potential transcription factor binding sites. The preferred models for representation of transcription factor binding specificity have been termed position-specific scoring matrices. JASPAR is an open-access database of annotated, high-quality, matrix-based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived exclusively from sets of nucleotide sequences experimentally demonstrated to bind transcription factors. The database is complemented by a web interface for browsing, searching and subset selection, an online sequence analysis utility and a suite of programming tools for genome-wide and comparative genomic analysis of regulatory regions. JASPAR is available at http://jaspar. cgb.ki.se. 10.1093/nar/gkh012}, address = {Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius v\"{a}g 35, S-17177 Stockholm, Sweden.}, author = {Sandelin, Albin and Alkema, Wynand and Engstrom, Par and Wasserman, Wyeth W. and Lenhard, Boris}, citeulike-article-id = {827938}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkh012}, citeulike-linkout-1 = {http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D91}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/14681366}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=14681366}, citeulike-linkout-4 = {http://people.genome.duke.edu/~jhg9/articles/sandelin04_JAO.pdf}, day = {1}, doi = {10.1093/nar/gkh012}, issn = {1362-4962}, journal = {Nucl. Acids Res.}, keywords = {database, eukaryotic, jaspar}, month = {January}, number = {suppl\_1}, pages = {D91--94}, posted-at = {2008-04-01 02:08:44}, priority = {0}, title = {JASPAR: an open-access database for eukaryotic transcription factor binding profiles}, url = {http://dx.doi.org/10.1093/nar/gkh012}, volume = {32}, year = {2004} }

TY - JOUR ID - sandalin2004 L3 - citeulike-article-id:827938 N2 - The analysis of regulatory regions in genome sequences is strongly based on the detection of potential transcription factor binding sites. The preferred models for representation of transcription factor binding specificity have been termed position-specific scoring matrices. JASPAR is an open-access database of annotated, high-quality, matrix-based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived exclusively from sets of nucleotide sequences experimentally demonstrated to bind transcription factors. The database is complemented by a web interface for browsing, searching and subset selection, an online sequence analysis utility and a suite of programming tools for genome-wide and comparative genomic analysis of regulatory regions. JASPAR is available at http://jaspar. cgb.ki.se. 10.1093/nar/gkh012 IS - suppl_1 JF - Nucl. Acids Res. SN - 1362-4962 AD - Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius väg 35, S-17177 Stockholm, Sweden. EP - 94 TI - JASPAR: an open-access database for eukaryotic transcription factor binding profiles VL - 32 SP - D91 KW - database KW - eukaryotic KW - jaspar AU - Sandelin, Albin AU - Alkema, Wynand AU - Engstrom, Par AU - Wasserman, Wyeth AU - Lenhard, Boris PY - 2004/01/01/ UR - http://dx.doi.org/10.1093/nar/gkh012 ER -