nklee's Frith:MC [5 articles] Export

Recent papers posted to nklee's library by the author Frith:MC. You can also see everyone's Frith:MC.

	Cluster-Buster: finding dense clusters of motifs in DNA sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668. by Martin C. Frith, Michael C. Li, Zhiping Weng posted to clustering dna by nklee on 2008-12-03 23:22:31 as along with 3 people and 1 group Dulce isimpson indigoviolet EisenLab
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to analysis genome wide by nklee on 2008-12-02 06:30:11 as along with 19 people and 4 groups rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 djkt jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	Detection of functional DNA motifs via statistical over-representation [My Copy] Nucl. Acids Res., Vol. 32, No. 4. (26 February 2004), pp. 1372-1381. by Martin C. Frith, Yutao Fu, Liqun Yu, Jiang-Fan Chen, Ulla Hansen, Zhiping Weng posted to detection motif by nklee on 2008-09-22 03:35:44 as along with 2 people farhat natstreet
	Finding functional sequence elements by multiple local alignment [My Copy] Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 189-200. by Martin C. Frith, Ulla Hansen, John L. Spouge, Zhiping Weng posted to alignment local multiple by nklee on 2008-02-01 05:50:40 as along with 6 people and 1 group wyatt111 idonaldson wowalz treangen dquest kengg Plantandetc
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to benchmarking binding discovery sites by nklee on 2007-09-26 23:39:45 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT

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comparative	30
clustering	29
motif	25
genomic	17
algorithm	15
genome	14
yeast	14
discovery	13
network	13
neural	13
review	11
survey	11
dependency	10
genetic	10
statistics	10
analysis	7
chip	7
conservation	7
detection	7
footprinting	7
information	7
alignment	6
mixture	6
position	6
scale	6
entropy	5
hierarchical	5
large	5
model	5
similarity	5
binding	4
database	4
map	4
multiple	4
mutual	4
nucleosome	4
organizing	4
protein	4
self	4
statistical	4
computing	3
dataset	3
drosophila	3
evaluation	3
evolutionary	3
feature	3
function	3
gibbs	3
human	3
likelihood	3
matrix	3
maximum	3
prediction	3
promoter	3
regulatory	3
sequence	3
significance	3
statistic	3
tools	3
arabidopsis	2
background	2
benchmarking	2
cis-regulatory	2
cluster	2
composite	2
dna	2
elements	2
energy	2
evolution	2
familial	2
genomics	2
kmer	2
learning	2
melanogaster	2
motifs	2
number	2
of	2
profile	2
p-value	2
recognition	2
roc	2
scoring	2
selection	2
sites	2
soft	2
som	2
theory	2
tool	2
unsupervised	2
weight	2
wide	2
anchored	1
benchmark	1
bioperl	1
blocks	1
cell	1
chip-chip	1
cis	1
coding	1
combinatorial	1
comprative	1
computational	1
consensus	1
content	1
cross-species	1
cycle	1
dependencies	1
deterministic	1
discriminative	1
distribution	1
divergence	1
dropsophila	1
dsom	1
ecoli	1
encoding	1
enhancers	1
ensemble	1
eukaryotic	1
features	1
filtering	1
functional	1
fungal	1
gap	1
graph	1
heirarchical	1
hidden	1
hierachical	1
hmm	1
hypergeometric	1
important	1
initialization	1
integrated	1
jaspar	1
kd-tree	1
kmeans	1
kononen	1
length	1
local	1
machine	1
markov	1
match	1
matching	1
measure	1
mechanics	1
merging	1
metric	1
microarray	1
modeling	1
module	1
multistep	1
muscle	1
nearest	1
neighbor	1
neutral	1
new	1
noise	1
nucleotide	1
overrepresentation	1
over-representation	1
phylogenetic	1
phylogeny	1
plant	1
progressive	1
prokaryotic	1
regulation	1
rna	1
rules	1
sampling	1
search	1
semi-supervised	1
shannon	1
signal	1
significant	1
site	1
speed	1
stability	1
strength	1
structural	1
substitution	1
thaliana	1
theoretical	1
threshold	1
transition	1
transversion	1
two	1
unknown	1
up	1
web	1
xxx	1
yeasts	1

nklee's Frith:MC [5 articles] Export

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