nklee's clustering [29 articles] Export

Recent papers added to nklee's library classified by the tag clustering. You can also see everyone's clustering.

	Large scale hierarchical clustering of protein sequences [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Antje Krause, Jens Stoye, Martin Vingron posted to clustering hierarchical by nklee on 2008-12-31 03:14:29 as along with 3 people cmzmasek kgutwin lonshy
	Clustering DNA sequences by feature vectors [My Copy] Molecular Phylogenetics and Evolution, Vol. 41, No. 1. (October 2006), pp. 64-69. by Libin Liu, Yee-Kin Ho, Stephen Yau posted to clustering dna by nklee on 2008-12-03 23:45:57 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Cluster-Buster: finding dense clusters of motifs in DNA sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668. by Martin C. Frith, Michael C. Li, Zhiping Weng posted to clustering dna by nklee on 2008-12-03 23:22:31 as along with 3 people and 1 group Dulce isimpson indigoviolet EisenLab
	Spectral clustering of protein sequences. [My Copy] Nucleic acids research, Vol. 34, No. 5. (2006), pp. 1571-1580. by Alberto Paccanaro, James A. Casbon, Mansoor A. Saqi posted to clustering protein by nklee on 2008-12-03 23:11:29 as along with 2 people and 1 group paccanarolab druvus Paccanaro Lab
	Clustering of DNA Sequences in Human Promoters [My Copy] Genome Res., Vol. 14, No. 8. (1 August 2004), pp. 1562-1574. by Peter C. Fitzgerald, Andrey Shlyakhtenko, Alain A. Mir, Charles Vinson posted to clustering human of promoter by nklee on 2008-12-03 23:04:48 as along with 3 people myrtilus smiddha ale
	A multistep bioinformatic approach detects putative regulatory elements in gene promoters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by S. Bortoluzzi, A. Coppe, A. Bisognin, C. Pizzi, G. A. Danieli posted to clustering multistep by nklee on 2008-11-12 01:52:42 as along with 2 people wowalz dquest
	Estimating the number of clusters in a data set via the gap statistic [My Copy] Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 63, No. 2. (2001), pp. 411-423. by Robert Tibshirani, Guenther Walther, Trevor Hastie posted to cluster clustering gap number of statistic by nklee on 2008-11-05 22:38:54 as
	A method for initialising the K-means clustering algorithm using kd-trees [My Copy] Pattern Recogn. Lett., Vol. 28, No. 8. (2007), pp. 965-973. by Stephen J. Redmond, Conor Heneghan posted to clustering initialization kd-tree kmeans by nklee on 2008-11-05 07:29:25 as
	Growing Hierarchical Tree SOM: An unsupervised neural network with dynamic topology [My Copy] Neural Netw., Vol. 19, No. 10. (2006), pp. 1568-1580. by Alberto Forti, Gian L. Foresti posted to clustering hierarchical network neural som by nklee on 2008-10-30 07:35:09 as
	Efficient bottom-up hybrid hierarchical clustering techniques for protein sequence classification [My Copy] Pattern Recognition, Vol. 39, No. 12. (December 2006), pp. 2344-2355. by P. Vijaya, M. Narasimhamurty, D. Subramanian posted to clustering hierarchical protein by nklee on 2008-10-30 07:27:08 as
	Toward an Improved Clustering of Large Data Sets Using Maximum Common Substructures and Topological Fingerprints [My Copy] J CHEM. INF. MODEL, Vol. X, No. X. by A. Bocker posted to clustering large scale by nklee on 2008-10-29 21:46:48 as
	Hierarchical tree snipping: clustering guided by prior knowledge [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3335-3342. by Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif posted to clustering network neural som by nklee on 2008-10-21 07:12:25 as along with 2 people and 1 group carlk sobolevnrm baker-group
	Exploratory Consensus of Hierarchical Clusterings for Melanoma and Breast Cancer [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Pritha Mahata posted to clustering hierachical by nklee on 2008-10-09 06:06:51 as
	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49. by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial posted to clustering by nklee on 2008-09-29 06:23:05 as along with 5 people chad_davis isimpson druvus sconlan nuin
	Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics [My Copy] PNAS, Vol. 99, No. 11. (2002), pp. 7323-7328. by Erik van Nimwegen†, Mihaela Zavolan, Nikolaus Rajewsky, Eric D. Siggia posted to clustering comparative genomic by nklee on 2008-07-16 01:20:21 as
	Maximum likelihood competitive learning [My Copy] In Advances in Neural Information Processing Systems, Vol. 2 (1990) by S. Nowlan edited by D. Touretzky posted to clustering likelihood maximum by nklee on 2008-06-17 07:42:54 as
	Computational Identification of Transcription Factor Binding Sites via a Transcription-factor-centric Clustering (TFCC) Algorithm [My Copy] Journal of Molecular Biology, Vol. 318, No. 1. (19 April 2002), pp. 71-81. by Zhou Zhu, Yitzhak Pilpel, George M. Church posted to clustering by nklee on 2008-02-21 03:39:35 as
	A novel approach to identifying regulatory motifs in distantly related genomes [My Copy] Genome Biology, Vol. 6, No. 13. (2005) by Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal posted to clustering comparative footprinting genomic by nklee on 2008-01-31 04:19:31 as along with 1 person wowalz
	Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. [My Copy] Nat Biotechnol, Vol. 21, No. 4. (April 2003), pp. 435-439. by Z. S. Qin, L. A. McCue, W. Thompson, L. Mayerhofer, C. E. Lawrence, J. S. Liu posted to clustering by nklee on 2008-01-31 04:14:03 as along with 3 people kaarsinogen balajis wenhan
	Unsupervised mutual information criterion for elimination of overtraining in supervised multilayer networks [My Copy] Neural Comput., Vol. 7, No. 1. (January 1995), pp. 86-107. by G. Deco, W. Finnoff, H. G. Zimmermann posted to clustering entropy information mutual shannon unsupervised by nklee on 2008-01-25 03:54:48 as
	iGibbs: improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling. [My Copy] Proteins, Vol. 66, No. 3. (15 February 2007), pp. 671-681. by S. Kim, Z. Wang, M. Dalkilic posted to clustering gibbs by nklee on 2008-01-22 01:57:53 as along with 1 person wowalz
	Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. 2. (1999), pp. 264-277. by Isidore Rigoutsos, Aris Floratos, Christos Ouzounis, Yuan Gao, Laxmi Parida posted to clustering hierarchical by nklee on 2008-01-15 05:17:59 as along with 1 person stharward
	Data clustering: a review [My Copy] ACM Computing Surveys, Vol. 31, No. 3. (1999), pp. 264-323. by A. K. Jain, M. N. Murty, P. J. Flynn posted to algorithm clustering review survey by nklee on 2008-01-01 04:15:05 as along with 24 people and 3 groups marquisdesade jmenche doitian radical V pdlug stanley jelsas sona gangli macowell mhaller ali grimm numata carueda microserf rahul aviad_work rchauhan sugarexpletive stewi2 MortMan shinichi3 tulip SRL BUiGEM
	Information-based clustering [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 51. (20 December 2005), pp. 18297-18302. by Noam Slonim, Gurinder S. Atwal, Gašper Tkačik, William Bialek posted to algorithm clustering information theoretical by nklee on 2008-01-01 04:14:44 as along with 11 people and 1 group carlk saket tmmurali kuhn textoris okarsligil bayesian balicea jdiggans dylan77 quianominorleo Bioinformatics
	A clustering algorithm based on graph connectivity [My Copy] Information Processing Letters, Vol. 76, No. 4--6. (2000), pp. 175-181. by Erez Hartuv, Ron Shamir posted to algorithm clustering graph theory by nklee on 2008-01-01 04:14:23 as along with 17 people and 6 groups pdlug eme zqshen fsilvestri rahul srinaths Jaykul metamerist augusto petzlux mabbott balicea gane5h onyx gurkanbebek mmartin maralena GraphVis astro InformationRetrieval SRL AIRgroup oktave-labs
	A Survey of Clustering Data Mining Techniques [My Copy] Grouping Multidimensional Data (2006), pp. 25-71. by P. Berkhin posted to algorithm clustering survey by nklee on 2008-01-01 04:13:57 as along with 4 people sona eddymier imrchen lillejul
	DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61. by Shaun Mahony, Philip E. Auron, Panayiotis V. Benos posted to clustering familial profile by nklee on 2007-11-07 05:23:54 as along with 4 people aalibes zwang heliopais pradiptaray
	Constrained Binding Site Diversity within Families of Transcription Factors Enhances Pattern Discovery Bioinformatics [My Copy] Journal of Molecular Biology, Vol. 338, No. 2. (23 April 2004), pp. 207-215. by Albin Sandelin, Wyeth W. Wasserman posted to clustering familial profile by nklee on 2007-11-07 05:20:56 as along with 3 people maximilianh hagechouchin443 tuck
	Large scale clustering of protein sequences with FORCE -- A layout based heuristic for weighted cluster editing [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Tobias Wittkop, Jan Baumbach, Francisco Lobo, Sven Rahmann posted to clustering by nklee on 2007-10-18 05:56:38 as along with 3 people cmzmasek druvus bobychan

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comparative	30
clustering	29
motif	25
genomic	17
algorithm	15
genome	14
yeast	14
discovery	13
network	13
neural	13
review	12
survey	11
dependency	10
genetic	10
statistics	10
analysis	7
chip	7
conservation	7
detection	7
footprinting	7
information	7
alignment	6
mixture	6
position	6
scale	6
entropy	5
hierarchical	5
large	5
model	5
similarity	5
binding	4
database	4
map	4
multiple	4
mutual	4
nucleosome	4
organizing	4
protein	4
self	4
statistical	4
computing	3
dataset	3
drosophila	3
evaluation	3
evolutionary	3
feature	3
function	3
gibbs	3
human	3
likelihood	3
matrix	3
maximum	3
prediction	3
promoter	3
regulatory	3
sequence	3
significance	3
statistic	3
tools	3
arabidopsis	2
background	2
benchmarking	2
cis-regulatory	2
cluster	2
composite	2
dna	2
elements	2
energy	2
evolution	2
familial	2
genomics	2
kmer	2
learning	2
melanogaster	2
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number	2
of	2
profile	2
p-value	2
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roc	2
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theoretical	1
threshold	1
transition	1
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two	1
unknown	1
up	1
web	1
xxx	1
yeasts	1

nklee's clustering [29 articles] Export

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