nklee's comparative [30 articles] Export

Recent papers added to nklee's library classified by the tag comparative. You can also see everyone's comparative.

	Algorithms for phylogenetic footprinting. [My Copy] J Comput Biol, Vol. 9, No. 2. (2002), pp. 211-223. by M. Blanchette, B. Schwikowski, M. Tompa posted to comparative footprinting genomic by nklee on 2008-09-30 04:43:53 as along with 2 people chad_davis dquest
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted to comparative genome scale by nklee on 2008-09-26 07:38:29 as along with 12 people and 2 groups timflutre gjuggler aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
	EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 41. (11 October 2005), pp. 14700-14705. by Ward F. Odenwald, Wayne Rasband, Alexander Kuzin, Thomas Brody posted to comparative by nklee on 2008-09-25 02:26:55 as
	Identification and characterization of multi-species conserved sequences. [My Copy] Genome Res, Vol. 13, No. 12. (December 2003), pp. 2507-2518. by E. H. Margulies, M. Blanchette, D. Haussler, E. D. Green, posted to comparative dataset by nklee on 2008-07-18 02:05:47 as along with 6 people and 1 group aprasad operon ujh brant sujaikumar bezdan EisenLab
	Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics [My Copy] PNAS, Vol. 99, No. 11. (2002), pp. 7323-7328. by Erik van Nimwegen†, Mihaela Zavolan, Nikolaus Rajewsky, Eric D. Siggia posted to clustering comparative genomic by nklee on 2008-07-16 01:20:21 as
	Tuning in to the signals: noncoding sequence conservation in vertebrate genomes [My Copy] Trends in Genetics, Vol. In Press, Corrected Proof by Greg Elgar, Tanya Vavouri posted to comparative by nklee on 2008-06-20 02:35:53 as along with 2 people djkt dchughes
	Conservation of divergent transcription in fungi [My Copy] Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211. by Philip R. Kensche, Martin Oti, Bas E. Dutilh, Martijn A. Huynen posted to comparative conservation by nklee on 2008-05-30 03:13:26 as along with 2 people and 1 group GustavoLacerda stajich Mycology
	More robust detection of motifs in coexpressed genes by using phylogenetic information [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Pieter Monsieurs, Gert Thijs, Abeer Fadda, et al.Sigrid De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal posted to comparative genomics by nklee on 2008-05-02 07:25:54 as
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted to comparative conservation genomic by nklee on 2008-04-28 03:31:33 as along with 7 people farhat emptyhb aprasad brant djkt xingxu bpcusack
	A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors. [My Copy] Nucleic Acids Res, Vol. 34, No. 21. (2006) by H. Ji, S. A. Vokes, W. H. Wong posted to analysis comparative by nklee on 2008-04-16 08:20:37 as along with 1 person jtomasch
	A novel approach to identifying regulatory motifs in distantly related genomes [My Copy] Genome Biology, Vol. 6, No. 13. (2005) by Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal posted to clustering comparative footprinting genomic by nklee on 2008-01-31 04:19:31 as along with 1 person wowalz
	Prediction of transcription factor binding sites using ChIP-chip and phylogenetic footprinting data [My Copy] Journal of Bioinformatics and Computational Biology, Vol. 5, No. 1. (February 2007), pp. 105-116. by Markus T. Friberg posted to chip comparative genomic by nklee on 2008-01-28 03:29:10 as
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted to comparative genomic plant by nklee on 2008-01-10 02:36:09 as along with 5 people and 1 group operon dpollard xwbcn kengg xili03 EisenLab
	A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. [My Copy] J Mol Biol, Vol. 284, No. 2. (27 November 1998), pp. 241-254. by K. Robison, A. M. McGuire, G. M. Church posted to comparative ecoli footprinting genomic by nklee on 2008-01-02 23:09:01 as along with 2 people medic0747 kaarsinogen
	Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics [My Copy] Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458. by Yueyi Liu, Shirley X. Liu, Liping Wei, Russ B. Altman, Serafim Batzoglou posted to comparative genomic yeast by nklee on 2008-01-01 23:45:44 as along with 4 people and 1 group cisevol lyongu gpalidwor dquest cis-regulatory-evolution
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to comparative genomic yeast by nklee on 2008-01-01 23:42:51 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Computation and Analysis of Genomic Multi-Sequence Alignments [My Copy] Annual Review of Genomics and Human Genetics, Vol. 8, No. 1. (9 May 2007), pp. 193-213. by Mathieu Blanchette posted to alignment comparative genomic multiple sequence by nklee on 2008-01-01 23:32:50 as along with 7 people and 1 group natstreet druvus treangen dpollard lilou maximilianh aprasad EisenLab
	Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays [My Copy] Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331. by Sonali Mukherjee, Michael F. Berger, Ghil Jona, et al.Xun S. Wang, Dale Muzzey, Michael Snyder, Richard A. Young, Martha L. Bulyk posted to cell comparative cycle genomic yeast by nklee on 2008-01-01 05:28:00 as along with 5 people johncumbers olympos emptyhb yevishere kristallreiner
	Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions [My Copy] Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1603-1613. by Laurie Gordon, Shan Yang, Mary Tran-Gyamfi, et al.Dan Baggott, Mari Christensen, Aaron Hamilton, Richard Crooijmans, Martien Groenen, Susan Lucas, Ivan Ovcharenko, Lisa Stubbs posted to comparative genomic by nklee on 2008-01-01 01:10:57 as along with 1 person maximilianh
	28-Way vertebrate alignment and conservation track in the UCSC Genome Browser [My Copy] Genome Res. (5 November 2007), gr.6761107. by Webb Miller, Kate Rosenbloom, Ross C. Hardison, et al.Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C. King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S. Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H. Pringle, William J. Murphy, Arthur Lesk, George M. Weinstock, Kerstin Lindblad-Toh, Richard A. Gibbs, Eric S. Lander, Adam Siepel, David Haussler, James W. Kent posted to comparative genomic by nklee on 2008-01-01 01:09:30 as along with 11 people rschulz aprasad dchughes maximilianh idonaldson fpattyn gjuggler clearbluespring joavah AaronDarling guhjy
	Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e247. by Jingchun Zhu, Zachary J. Sanborn, Mark Diekhans, Craig B. Lowe, Tom H. Pringle, David Haussler posted to comparative genome by nklee on 2007-12-26 23:37:52 as along with 6 people and 1 group Zephyrus balicea djkt grahamc wenhan bpcusack R.E.A.D
	Reliable prediction of regulator targets using 12 Drosophila genomes [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1919-1931. by Pouya Kheradpour, Alexander Stark, Sushmita Roy, Manolis Kellis posted to comparative genome by nklee on 2007-12-26 23:35:27 as along with 9 people and 2 groups heliopais valeriehilgers dpollard lp2 maximilianh roys caseybrown emptyhb barwil EisenLab cis-regulatory-evolution
	Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes [My Copy] Genome Res. (7 November 2007), gr.6249707. by Andreas Heger, Chris P. Ponting posted to comparative genome by nklee on 2007-12-26 23:33:46 as along with 6 people and 1 group Garamonfok operon indigoviolet balicea gjuggler hdopazo EisenLab
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted to comparative drosophila genome by nklee on 2007-12-19 01:54:54 as along with 5 people and 2 groups hrogers indigoviolet dpollard cisevol brant EisenLab cis-regulatory-evolution
	Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi [My Copy] Genome Res. (5 November 2007), gr.6531807. by Michael J. Cornell, Intikhab Alam, Darren M. Soanes, et al.Han M. Wong, Cornelia Hedeler, Norman W. Paton, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver posted to comparative genome by nklee on 2007-12-16 21:07:19 as along with 6 people and 1 group stajich grahamc GustavoLacerda idonaldson seitentaisei alanrw Mycology
	Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Stefan Engelen, Fariza Tahi posted to comparative genome by nklee on 2007-11-29 03:18:17 as along with 1 person cassj
	Sequencing and comparison of yeast species to identify genes and regulatory elements [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to comparative motif yeast by nklee on 2007-11-27 06:30:25 as along with 4 people Dulce kaarsinogen lyongu kmdaily
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to comparative genome by nklee on 2007-11-07 20:55:20 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Comparative genomics. [My Copy] PLoS biology, Vol. 1, No. 2. (17 November 2003), e58. by Ross C. Hardison posted to comparative genomic by nklee on 2007-11-04 23:33:35 as along with 7 people and 1 group rshe roys katholt aprasad axelon beatrizfernandez Neeperando Microbial-Ecology
	Comparative Genomic [My Copy] Annu. Rev. Genomics Hum. Genet, Vol. 5 (2004), pp. 15-56. by Webb Miller, Kateryna D. Makova, Anton Nekrutenko, Ross C. Hardison posted to comparative genomic by nklee on 2007-09-26 09:24:02 as

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comparative	30
clustering	29
motif	25
genomic	17
algorithm	15
genome	14
yeast	14
discovery	13
network	13
neural	13
review	12
survey	11
dependency	10
genetic	10
statistics	10
analysis	7
chip	7
conservation	7
detection	7
footprinting	7
information	7
alignment	6
mixture	6
position	6
scale	6
entropy	5
hierarchical	5
large	5
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multiple	4
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protein	4
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dataset	3
drosophila	3
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function	3
gibbs	3
human	3
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matrix	3
maximum	3
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promoter	3
regulatory	3
sequence	3
significance	3
statistic	3
tools	3
arabidopsis	2
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benchmarking	2
cis-regulatory	2
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dna	2
elements	2
energy	2
evolution	2
familial	2
genomics	2
kmer	2
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of	2
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nklee's comparative [30 articles] Export

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