nklee's genome [14 articles] Export

Recent papers added to nklee's library classified by the tag genome. You can also see everyone's genome.

	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to chip genome large scale by nklee on 2009-04-23 00:31:43 as along with 19 people and 1 group jwfoley ewilban1 bertelsen stajich smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	Genome wide identification of regulatory motifs in Bacillus subtilis. [My Copy] BMC bioinformatics, Vol. 4 (16 May 2003) by M. M. Mwangi, E. D. Siggia posted to analysis genome large scale wide by nklee on 2008-12-05 05:26:02 as
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to analysis genome wide by nklee on 2008-12-02 06:30:11 as along with 19 people and 4 groups rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 djkt jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii [My Copy] Nucl. Acids Res. (3 November 2008), gkm499. by Enhu Li, Claudia I. Reich, Gary J. Olsen posted to genome large scale by nklee on 2008-11-03 23:43:57 as along with 1 person neils
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted to comparative genome scale by nklee on 2008-09-26 07:38:29 as along with 12 people and 2 groups timflutre gjuggler aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
	Revisiting the Saccharomyces cerevisiae predicted ORFeome. [My Copy] Genome research, Vol. 18, No. 8. (23 August 2008), pp. 1294-1303. by Qian-Ru R. Li, Anne-Ruxandra R. Carvunis, Haiyuan Yu, et al.Jing-Dong D. Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J. Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E. Hill, Michael E. Cusick, Marc Vidal posted to genome yeast by nklee on 2008-06-20 02:38:24 as along with 6 people and 1 group biomcgary kiekyon dbensasson stajich biehl guhjy Mycology
	Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e247. by Jingchun Zhu, Zachary J. Sanborn, Mark Diekhans, Craig B. Lowe, Tom H. Pringle, David Haussler posted to comparative genome by nklee on 2007-12-26 23:37:52 as along with 6 people and 1 group Zephyrus balicea djkt grahamc wenhan bpcusack R.E.A.D
	Reliable prediction of regulator targets using 12 Drosophila genomes [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1919-1931. by Pouya Kheradpour, Alexander Stark, Sushmita Roy, Manolis Kellis posted to comparative genome by nklee on 2007-12-26 23:35:27 as along with 9 people and 2 groups heliopais valeriehilgers dpollard lp2 maximilianh roys caseybrown emptyhb barwil EisenLab cis-regulatory-evolution
	Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes [My Copy] Genome Res. (7 November 2007), gr.6249707. by Andreas Heger, Chris P. Ponting posted to comparative genome by nklee on 2007-12-26 23:33:46 as along with 6 people and 1 group Garamonfok operon indigoviolet balicea gjuggler hdopazo EisenLab
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted to comparative drosophila genome by nklee on 2007-12-19 01:54:54 as along with 5 people and 2 groups hrogers indigoviolet dpollard cisevol brant EisenLab cis-regulatory-evolution
	Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi [My Copy] Genome Res. (5 November 2007), gr.6531807. by Michael J. Cornell, Intikhab Alam, Darren M. Soanes, et al.Han M. Wong, Cornelia Hedeler, Norman W. Paton, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver posted to comparative genome by nklee on 2007-12-16 21:07:19 as along with 6 people and 1 group stajich grahamc GustavoLacerda idonaldson seitentaisei alanrw Mycology
	Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Stefan Engelen, Fariza Tahi posted to comparative genome by nklee on 2007-11-29 03:18:17 as along with 1 person cassj
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to comparative genome by nklee on 2007-11-07 20:55:20 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Raising the estimate of functional human sequences. [My Copy] Genome Res (9 August 2007) by Michael Pheasant, John S S. Mattick posted to functional genome signal by nklee on 2007-09-19 23:35:06 as along with 11 people and 1 group galka8_diploma hdopazo guhjy jfr andersbj djkt grahamc lp2 cabbagezs ljs mimulus_99 microRNA

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comparative	30
clustering	29
motif	25
genomic	17
algorithm	15
genome	14
yeast	14
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nklee's genome [14 articles] Export

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