nklee's yeast [14 articles] Export

Recent papers added to nklee's library classified by the tag yeast. You can also see everyone's yeast.

	Funybase: a Fungal phylogenomic database [My Copy] BMC Bioinformatics, Vol. 9 (27 October 2008), 456. by Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, et al.Annie Gendrault, Tatiana Giraud, Elisabeth Fournier, Manuela Lopez-Villavicencio, Angelique Gautier, Marc-Henri Lebrun, Helene Chiapello posted to database fungal yeast by nklee on 2008-10-29 07:12:20 as along with 6 people and 1 group GustavoLacerda fungal nlapalu ojabado druvus stajich Mycology
	Revisiting the Saccharomyces cerevisiae predicted ORFeome. [My Copy] Genome research, Vol. 18, No. 8. (23 August 2008), pp. 1294-1303. by Qian-Ru R. Li, Anne-Ruxandra R. Carvunis, Haiyuan Yu, et al.Jing-Dong D. Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J. Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E. Hill, Michael E. Cusick, Marc Vidal posted to genome yeast by nklee on 2008-06-20 02:38:24 as along with 6 people and 1 group biomcgary kiekyon dbensasson stajich biehl guhjy Mycology
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to divergence yeast by nklee on 2008-04-28 03:31:03 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb anka EisenLab cis-regulatory-evolution
	SGD: Saccharomyces Genome Database. [My Copy] Nucleic acids research, Vol. 26, No. 1. (1 January 1998), pp. 73-79. by J. M. Cherry, C. Adler, C. Ball, et al.S. A. Chervitz, S. S. Dwight, E. T. Hester, Y. Jia, G. Juvik, T. Roe, M. Schroeder, S. Weng, D. Botstein posted to yeast by nklee on 2008-04-01 03:35:40 as along with 7 people and 1 group tienholin schwalb leechuck irenas RMGraze lusk CitoJam dbk-lab
	Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence. [My Copy] Genome Res, Vol. 15, No. 2. (February 2005), pp. 205-213. by C. S. Chin, J. H. Chuang, H. Li posted to conservation yeast by nklee on 2008-01-17 21:42:30 as along with 3 people and 1 group briann lusk cisevol cis-regulatory-evolution
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to genomic yeast by nklee on 2008-01-01 23:51:40 as along with 32 people and 2 groups viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics [My Copy] Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458. by Yueyi Liu, Shirley X. Liu, Liping Wei, Russ B. Altman, Serafim Batzoglou posted to comparative genomic yeast by nklee on 2008-01-01 23:45:44 as along with 4 people and 1 group cisevol lyongu gpalidwor dquest cis-regulatory-evolution
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to comparative genomic yeast by nklee on 2008-01-01 23:42:51 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays [My Copy] Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331. by Sonali Mukherjee, Michael F. Berger, Ghil Jona, et al.Xun S. Wang, Dale Muzzey, Michael Snyder, Richard A. Young, Martha L. Bulyk posted to cell comparative cycle genomic yeast by nklee on 2008-01-01 05:28:00 as along with 5 people johncumbers olympos emptyhb yevishere kristallreiner
	Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection. [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1952-1963. by C. Narasimhan, P. LoCascio, E. Uberbacher posted to background modeling yeast by nklee on 2007-12-03 01:37:09 as along with 2 people xiaobeizhao xili03
	Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae. [My Copy] Phys Biol, Vol. 4, No. 2. (June 2007), pp. 134-143. by E. Aurell, A. F. d'Hérouël, C. Malmnäs, M. Vergassola posted to yeast by nklee on 2007-11-29 21:54:41 as along with 1 person and 1 group cwbrown EisenLab
	Sequencing and comparison of yeast species to identify genes and regulatory elements [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to comparative motif yeast by nklee on 2007-11-27 06:30:25 as along with 5 people viren4388 Dulce kaarsinogen lyongu kmdaily
	An improved map of conserved regulatory sites for Saccharomyces cerevisiae [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (7 March 2006), 113. by Kenzie Macisaac, Ting Wang, D. Benjamin Gordon, David Gifford, Gary Stormo, Ernest Fraenkel posted to yeast by nklee on 2007-11-01 03:43:19 as along with 9 people roys idonaldson tuck eckart_bindewald cconboy raiyar lusk barwil kristallreiner
	Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis. [My Copy] Genome Res, Vol. 11, No. 7. (July 2001), pp. 1175-1186. by P. F. Cliften, L. W. Hillier, L. Fulton, et al.T. Graves, T. Miner, W. R. Gish, R. H. Waterston, M. Johnston posted to footprinting yeast by nklee on 2007-10-29 05:16:18 as along with 2 people evaf kaarsinogen

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comparative	30
clustering	29
motif	25
genomic	17
algorithm	15
genome	14
yeast	14
discovery	13
network	13
neural	13
review	12
survey	11
dependency	10
genetic	10
statistics	10
analysis	7
chip	7
conservation	7
detection	7
footprinting	7
information	7
alignment	6
mixture	6
position	6
scale	6
entropy	5
hierarchical	5
large	5
model	5
similarity	5
binding	4
database	4
map	4
multiple	4
mutual	4
nucleosome	4
organizing	4
protein	4
self	4
statistical	4
computing	3
dataset	3
drosophila	3
evaluation	3
evolutionary	3
feature	3
function	3
gibbs	3
human	3
likelihood	3
matrix	3
maximum	3
prediction	3
promoter	3
regulatory	3
sequence	3
significance	3
statistic	3
tools	3
arabidopsis	2
background	2
benchmarking	2
cis-regulatory	2
cluster	2
composite	2
dna	2
elements	2
energy	2
evolution	2
familial	2
genomics	2
kmer	2
learning	2
melanogaster	2
motifs	2
number	2
of	2
profile	2
p-value	2
recognition	2
roc	2
scoring	2
selection	2
sites	2
soft	2
som	2
theory	2
tool	2
unsupervised	2
weight	2
wide	2
anchored	1
benchmark	1
bioperl	1
blocks	1
cell	1
chip-chip	1
cis	1
coding	1
combinatorial	1
comprative	1
computational	1
consensus	1
content	1
cross-species	1
cycle	1
dependencies	1
deterministic	1
discriminative	1
distribution	1
divergence	1
dropsophila	1
dsom	1
ecoli	1
encoding	1
enhancers	1
ensemble	1
eukaryotic	1
features	1
filtering	1
functional	1
fungal	1
gap	1
graph	1
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hidden	1
hierachical	1
hmm	1
hypergeometric	1
important	1
initialization	1
integrated	1
interaction	1
jaspar	1
kd-tree	1
kmeans	1
kononen	1
length	1
local	1
machine	1
markov	1
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matching	1
measure	1
mechanics	1
merging	1
metric	1
microarray	1
modeling	1
module	1
multistep	1
muscle	1
nearest	1
neighbor	1
neutral	1
new	1
noise	1
nucleotide	1
overrepresentation	1
over-representation	1
phylogenetic	1
phylogeny	1
plant	1
progressive	1
prokaryotic	1
protein-dna	1
regulation	1
rna	1
rules	1
sampling	1
search	1
semi-supervised	1
shannon	1
signal	1
significant	1
site	1
speed	1
stability	1
strength	1
structural	1
substitution	1
thaliana	1
theoretical	1
threshold	1
transition	1
transversion	1
two	1
unknown	1
up	1
web	1
xxx	1
yeasts	1

nklee's yeast [14 articles] Export

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