nknii's library 49 articles Export

	Simple electrostatic model improves designed protein sequences. [My Copy] Protein Sci (5 July 2006) by Eric S S. Zollars, Shannon A A. Marshall, Stephen L L. Mayo posted to design by nknii on 2006-07-17 06:24:00 as along with 1 group TCR_Signaling
	Molecular dynamics study of a calmodulin-like protein with an IQ peptide: Spontaneous refolding of the protein around the peptide. [My Copy] Proteins (27 March 2006) by Assaf Ganoth, Esther Nachliel, Ran Friedman, Menachem Gutman posted to dynamics by nknii on 2006-05-09 09:56:10 as along with 1 group TCR_Signaling
	The crystal structure of human receptor protein tyrosine phosphatase kappa phosphatase domain 1. [My Copy] Protein Sci (2 May 2006) by Jeyanthy Eswaran, Judit É E. Debreczeni, Emma Longman, Alastair J J. Barr, Stefan Knapp posted to phosphatase by nknii on 2006-05-09 09:45:42 as along with 1 group TCR_Signaling
	The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins. [My Copy] Proteins, Vol. 56, No. 4. (1 September 2004), pp. 768-781. by K. Manikandan, S. Ramakumar posted to folding by nknii on 2006-05-09 09:35:12 as along with 1 person and 1 group carlosjavierna TCR_Signaling
	Protein kinase classification. [My Copy] Methods Enzymol, Vol. 200 (1991), pp. 3-37. by T. Hunter posted to kinase_str by nknii on 2006-05-09 06:09:42 as along with 1 group TCR_Signaling
	Use of baculovirus MHCpeptide display libraries to characterize T-cell receptor ligands [My Copy] Immunological Reviews, Vol. 210, No. 1. (April 2006), pp. 156-170. by Crawford, Frances, Jordan, et al.R. Kimberly, Stadinski, Brian, Wang, Yibing, Huseby, Eric, Marrack, Philippa, Slansky, E. Jill, Kappler, W. John posted to mhc mhc_binding by nknii on 2006-04-25 18:50:57 as along with 1 person and 1 group eisei TCR_Signaling
	MHC and T cell interactions of a universal T-cell epitope from Plasmodium falciparum circumsporozoite protein. [My Copy] J Biol Chem (23 March 2006) by Carlos Parra-Lopez, J Mauricio M. Calvo-Calle, Thomas O O. Cameron, et al.Luis E E. Vargas, Luz Mary M. Salazar, Manuel E E. Patarroyo, Elizabeth H H. Nardin, Lawrence J J. Stern posted to mhc_binding by nknii on 2006-04-03 10:14:39 as along with 1 group TCR_Signaling
	Functional interactions of protein kinase A and C in signalling networks: a recapitulation. [My Copy] Cell Mol Life Sci, Vol. 63, No. 6. (March 2006), pp. 637-641. by E. Maioli, C. Torricelli, V. Fortino posted to kinase_network_example by nknii on 2006-03-30 07:45:34 as along with 1 group TCR_Signaling
	The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae. [My Copy] J Biol Chem (7 March 2006) by Kristy M M. Hawkins, Christina D D. Smolke posted to kinase_network_example by nknii on 2006-03-30 07:44:05 as along with 1 person and 1 group mhucka TCR_Signaling
	A network-based analysis of systemic inflammation in humans [My Copy] Nature, Vol. 437, No. 7061. (13 October 2005), pp. 1032-1037. by Steve E. Calvano, Wenzhong Xiao, Daniel R. Richards, et al.Ramon M. Felciano, Henry V. Baker, Raymond J. Cho, Richard O. Chen, Bernard H. Brownstein, J. Perren Cobb, S. Kevin Tschoeke, Carol Miller-Graziano, Lyle L. Moldawer, Michael N. Mindrinos, Ronald W. Davis, Ronald G. Tompkins, Stephen F. Lowry, Large Scale Collab posted to network networks by nknii on 2006-03-30 07:40:01 as along with 13 people and 1 group yaredo textoris tuck VCKALIA juliajumeau maryee lhonigberg noano grahamc massivemayhem karfunkel beapen guhjy TCR_Signaling
	Structures of Src-family tyrosine kinases. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 6. (December 1997), pp. 777-785. by F. Sicheri, J. Kuriyan posted to kinase_str by nknii on 2006-03-29 08:21:07 as along with 1 group TCR_Signaling
	Implicit solvation in the self-consistent mean field theory method: sidechain modelling and prediction of folding free energies of protein mutants. [My Copy] J Comput Aided Mol Des, Vol. 15, No. 8. (August 2001), pp. 721-740. by J. Mendes, A. M. Baptista, M. A. Carrondo, C. M. Soares posted to design by nknii on 2006-03-27 05:44:53 as along with 1 person and 1 group dfgreen TCR_Signaling
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 March 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to kinase_network by nknii on 2006-03-10 18:50:46 as along with 2 people and 1 group robfsouza matzke TCR_Signaling
	How does activation loop phosphorylation modulate catalytic activity in the cAMP-dependent protein kinase: A theoretical study. [My Copy] Protein Sci (7 March 2006) by Yuhui Cheng, Yingkai Zhang, J Andrew A. McCammon posted to kinase_str by nknii on 2006-03-10 18:46:22 as along with 1 person and 1 group barry TCR_Signaling
	Structures of S. aureus thymidylate kinase reveal an atypical active site configuration and an intermediate conformational state upon substrate binding. [My Copy] Protein Sci (7 March 2006) by Masayo Kotaka, Balvinder Dhaliwal, Jingshan Ren, et al.Charles E E. Nichols, Richard Angell, Michael Lockyer, Alastair R R. Hawkins, David K K. Stammers posted to kinase_str by nknii on 2006-03-10 18:45:50 as along with 1 group TCR_Signaling
	A molecular dynamics simulation of SNase and its hydration shell at high temperature and high pressure. [My Copy] Biochim Biophys Acta (25 January 2006) by Nikolai Smolin, Roland Winter posted to simulation by nknii on 2006-03-10 18:44:43 as along with 1 person and 1 group choonpeng TCR_Signaling
	Ca2+ stimulation of adenylyl cyclase generates dynamic oscillations in cyclic AMP. [My Copy] J Cell Sci, Vol. 119, No. Pt 5. (1 March 2006), pp. 828-836. by D. Willoughby, D. M. Cooper posted to networks simulation by nknii on 2006-03-10 18:41:41 as along with 1 group TCR_Signaling
	Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop. [My Copy] Biophys J (10 February 2006) by Chigusa Kobayashi, Shoji Takada posted to simulation by nknii on 2006-03-10 18:40:49 as along with 1 group TCR_Signaling
	Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells. [My Copy] FEBS J, Vol. 273, No. 5. (March 2006), pp. 873-894. by D. B. Kell posted to network by nknii on 2006-03-10 18:39:55 as along with 2 people and 1 group Borelli alanrw TCR_Signaling
	Dynamics of the RAS/ERK map kinase cascade as monitored by fluorescence probes. [My Copy] J Biol Chem (17 January 2006) by Aki Fujioka, Kenta Terai, Reina E E. Itoh, et al.Kazuhiro Aoki, Takeshi Nakamura, Shinya Kuroda, Eisuke Nishida, Michiyuki Matsuda posted to kinase_network by nknii on 2006-03-10 18:34:33 as along with 1 group TCR_Signaling
	Native protein sequences are designed to destabilize folding intermediates. [My Copy] Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2488-2492. by Y. Isogai posted to folding by nknii on 2006-03-10 18:23:14 as along with 1 person and 1 group bilab TCR_Signaling
	The Death-Associated Protein Kinases: Structure, Function, and Beyond. [My Copy] Annu Rev Biochem (16 February 2006) by Shani Bialik, Adi Kimchi posted to kinase_network by nknii on 2006-03-10 18:19:00 as along with 1 group TCR_Signaling
	Low degree metabolites explain essential reactions and enhance modularity in biological networks. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (8 March 2006) by Areejit Samal, Shalini Singh, Varun Giri, Sandeep Krishna, Nandula Raghuram, Sanjay Jain posted to network by nknii on 2006-03-10 18:06:04 as along with 1 group TCR_Signaling
	A motif-based profile scanning approach for genome-wide prediction of signaling pathways. [My Copy] Nat Biotechnol, Vol. 19, No. 4. (April 2001), pp. 348-353. by M. B. Yaffe, G. G. Leparc, J. Lai, T. Obata, S. Volinia, L. C. Cantley posted to no-tag by nknii on 2006-02-16 05:50:57 as along with 2 people and 1 group hryk mloewer TCR_Signaling
	Structure of MHC protein solved. [My Copy] Science, Vol. 238, No. 4827. (30 October 1987), pp. 613-614. by J. L. Marx posted to mhc by nknii on 2005-12-06 10:39:30 as along with 1 group TCR_Signaling
	The design and implementation of the immune epitope database and analysis resource. [My Copy] Immunogenetics, Vol. 57, No. 5. (June 2005), pp. 326-336. by B. Peters, J. Sidney, P. Bourne, et al.H. H. Bui, S. Buus, G. Doh, W. Fleri, M. Kronenberg, R. Kubo, O. Lund, D. Nemazee, J. V. Ponomarenko, M. Sathiamurthy, S. P. Schoenberger, S. Stewart, P. Surko, S. Way, S. Wilson, A. Sette posted to mhc_binding by nknii on 2005-12-06 06:37:44 as along with 1 group TCR_Signaling
	Comparative genomics of major histocompatibility complexes. [My Copy] Immunogenetics, Vol. 56, No. 10. (January 2005), pp. 683-695. by J. Kelley, L. Walter, J. Trowsdale posted to mhc by nknii on 2005-12-06 06:34:30 as along with 1 person and 1 group jermth TCR_Signaling
	Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. [My Copy] Immunogenetics, Vol. 57, No. 5. (June 2005), pp. 304-314. by H. H. Bui, J. Sidney, B. Peters, et al.M. Sathiamurthy, A. Sinichi, K. A. Purton, B. R. Mothé, F. V. Chisari, D. I. Watkins, A. Sette posted to epitope_prediction prediction_strategy by nknii on 2005-12-06 06:30:09 as along with 1 person and 1 group beapen TCR_Signaling
	Emerging principles for the recognition of peptide antigens by MHC class I molecules [My Copy] Science, Vol. 257, No. 5072. (14 August 1992), pp. 927-934. by M. Matsumura, D. H. Fremont, P. A. Peterson, I. A. Wilson posted to epitope_prediction mhc_binding by nknii on 2005-12-06 05:55:54 as along with 1 group TCR_Signaling
	MHC tutorial text, MHC CLASS I [My Copy] posted to no-tag by nknii on 2005-12-06 05:51:26 as along with 1 group TCR_Signaling
	A Structure-Based Algorithm to Predict Potential Binding Peptides to MHC Molecules with Hydrophobic Binding Pockets [My Copy] Human Immunology, Vol. 58, No. 1. (November 1997), pp. 1-11. by Yael Altuvia, Alessandro Sette, John Sidney, Scott Southwood, Hanah Margalit posted to prediction_strategy by nknii on 2005-12-06 05:37:09 as along with 1 person and 2 groups okarsligil Bioinformatics TCR_Signaling
	Probing the role of packing specificity in protein design. [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 19. (16 September 1997), pp. 10172-10177. by B. I. Dahiyat, S. L. Mayo posted to design protein rotamer by nknii on 2005-10-05 12:03:32 as along with 1 person and 1 group shuns TCR_Signaling
	Automated design of the surface positions of protein helices. [My Copy] Protein Sci, Vol. 6, No. 6. (June 1997), pp. 1333-1337. by B. I. Dahiyat, D. B. Gordon, S. L. Mayo posted to design protein rotamer by nknii on 2005-10-05 12:02:14 as along with 2 people and 1 group kgutwin lna TCR_Signaling
	Protein design automation. [My Copy] Protein Sci, Vol. 5, No. 5. (May 1996), pp. 895-903. by B. I. Dahiyat, S. L. Mayo posted to rotamer by nknii on 2005-10-05 11:58:06 as along with 4 people and 1 group dfgreen jwm shuns carlk TCR_Signaling
	Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. [My Copy] Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340. by R. L. Dunbrack, M. Karplus posted to rotamer by nknii on 2005-10-05 11:32:08 as along with 3 people and 1 group kazemi rsantana jwm TCR_Signaling
	Backbone-dependent Rotamer Library for Proteins Application to Side-chain Prediction [My Copy] Journal of Molecular Biology, Vol. 230, No. 2. (20 March 1993), pp. 543-574. by Jr Dunbrack, Martin Karplus posted to abs by nknii on 2005-10-05 11:28:42 as along with 2 people and 1 group dgront jwm TCR_Signaling
	Backbone-dependent rotamer library for proteins. Application to side-chain prediction. [My Copy] Journal of molecular biology, Vol. 230, No. 2. (20 March 1993), pp. 543-574. by R. L. Dunbrack, M. Karplus posted to rotamer by nknii on 2005-10-05 11:27:55 as along with 3 people and 1 group carlosjavierna dfgreen carlk TCR_Signaling
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted to rotamer by nknii on 2005-10-05 11:25:10 as along with 12 people and 2 groups karbak j3xucite dgront blackbart kazemi rsantana hmk LamBras mijam jwm phoenixzxl zwang MuraLab TCR_Signaling
	Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 4. (April 2005), pp. 1104-1114. by M. I. Zavodszky, L. A. Kuhn posted to rotamer by nknii on 2005-10-05 08:48:04 as along with 9 people and 2 groups fl ramensky BragilMassoud dgruiz yongzhao blackbart kazemi rsantana LamBras TCR_Signaling TSRI_MGL
	Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool [My Copy] Journal of Molecular Biology, Vol. 267, No. 5. (18 April 1997), pp. 1268-1282. by M. Bower posted to rotamer by nknii on 2005-10-05 08:47:26 as along with 6 people and 1 group carlosjavierna kaarsinogen blackbart mijam jwm carlk TCR_Signaling
	Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics. [My Copy] J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445. by L. L. Looger, H. W. Hellinga posted to design protein by nknii on 2005-10-04 21:47:31 as along with 4 people and 1 group dfgreen dgront mijam carlk TCR_Signaling
	Computational method to reduce the search space for directed protein evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 7. (27 March 2001), pp. 3778-3783. by C. A. Voigt, S. L. Mayo, F. H. Arnold, Z. G. Wang posted to no-tag by nknii on 2005-10-04 11:40:03 as along with 2 people and 1 group msuarezdiez betainverse TCR_Signaling
	Exponential Families [My Copy] Encyclopedia of Statistical Sciences by Barndorff-Nielsen posted to maths by nknii on 2005-10-04 11:21:33 as along with 2 people and 1 group brian yaroslavvb TCR_Signaling
	Sequence variation in ligand binding sites in proteins [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (30 September 2005), 240. by Thomas Magliery, Lynne Regan posted to no-tag by nknii on 2005-10-04 10:31:52 as along with 1 person and 1 group abhishek_tiwari TCR_Signaling
	Introduction to the random matrix theory: Gaussian Unitary Ensemble and beyond [My Copy] (7 Dec 2004) by Yan V. Fyodorov posted to maths by nknii on 2005-10-04 08:08:41 as along with 2 people and 2 groups rahul RMT TCR_Signaling SRL
	MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. [My Copy] Appl Bioinformatics, Vol. 3, No. 1. (2003), pp. 63-66. by P. Guan, I. A. Doytchinova, C. Zygouri, D. R. Flower posted to epitope_prediction prediction_strategy by nknii on 2005-10-04 08:00:21 as along with 1 group TCR_Signaling
	De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure. [My Copy] J Mol Biol, Vol. 325, No. 1. (3 January 2003), pp. 163-174. by F. Offredi, F. Dubail, P. Kischel, et al.K. Sarinski, A. S. Stern, C. Van de Weerdt, J. C. Hoch, C. Prosperi, J. M. François, S. L. Mayo, J. A. Martial posted to design protein by nknii on 2005-10-04 07:51:17 as along with 1 group TCR_Signaling
	Thermodynamic calculations in biological systems [My Copy] Biophysical Chemistry, Vol. In Press, Corrected Proof by Mario L. Amzel, Xavier Siebert, Anthony Armstrong, German Pabon posted to thermodynamics by nknii on 2005-10-04 06:53:54 as along with 6 people and 3 groups Scis0000002 barry pansapiens shuns imouthesmp ttjoseph structural_bioinformatics Bioinformatics TCR_Signaling
	Hydroxyl Groups in the betabeta Sandwich of Metallo-beta-lactamases Favor Enzyme Activity: A Computational Protein Design Study. [My Copy] J Mol Biol (7 June 2005) by Peter Oelschlaeger, Stephen L L. Mayo posted to design protein by nknii on 2005-10-04 06:51:30 as along with 1 person and 1 group shuns TCR_Signaling

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