noano's library 36 articles Export

	From promoter sequence to expression: A probabilistic framework [My Copy] (2002) by E. Segal, Y. Barash, I. Simon, N. Friechnan, D. Koller posted to binding expression integrative motif sequence stochastic by noano on 2006-07-01 09:25:33 as along with 2 people lyongu wnpx
	Decomposing gene expression into cellular processes. [My Copy] Pac Symp Biocomput (2003), pp. 89-100. by E. Segal, A. Battle, D. Koller posted to expression modules networks by noano on 2006-07-01 09:22:45 as along with 2 people wnpx frohike
	Genomic regulatory networks and animal development. [My Copy] Dev Cell, Vol. 9, No. 4. (October 2005), pp. 449-462. by A. Stathopoulos, M. Levine posted to development regulation review by noano on 2006-06-30 10:27:57 as along with 4 people roys postrational josepe dquest
	Prediction of regulatory modules comprising microRNAs and target genes. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by S. Yoon, G. De Micheli posted to microrna modules regulation by noano on 2006-06-30 10:26:33 as along with 5 people and 1 group padosori tonamswish eckart_bindewald mortenlindow maralena microRNA
	Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529. by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A. Lauffenburger, Garry P. Nolan posted to networks pathways yeast by noano on 2006-06-30 10:24:19 as along with 23 people and 1 group pkm phoenixzxl sameersoi abhishek_tiwari poirel roys frohike aviad_work czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang wnpx os252 j3xucite koller jhatrimatri cdppublications lp2 saman_vp CDP
	A network-based analysis of systemic inflammation in humans [My Copy] Nature, Vol. 437, No. 7061. (13 October 2005), pp. 1032-1037. by Steve E. Calvano, Wenzhong Xiao, Daniel R. Richards, et al.Ramon M. Felciano, Henry V. Baker, Raymond J. Cho, Richard O. Chen, Bernard H. Brownstein, J. Perren Cobb, S. Kevin Tschoeke, Carol Miller-Graziano, Lyle L. Moldawer, Michael N. Mindrinos, Ronald W. Davis, Ronald G. Tompkins, Stephen F. Lowry, Large Scale Collab posted to expression human immunology inflammation by noano on 2006-06-30 10:08:51 as along with 13 people and 1 group yaredo textoris tuck VCKALIA nknii juliajumeau maryee lhonigberg grahamc massivemayhem karfunkel beapen guhjy TCR_Signaling
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to interactions physical proteins yeast by noano on 2006-06-30 10:06:17 as along with 18 people and 3 groups carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
	Lefty antagonism of Squint is essential for normal gastrulation. [My Copy] Curr Biol, Vol. 12, No. 24. (23 December 2002), pp. 2129-2135. by B. Feldman, M. L. Concha, L. Saúde, et al.M. J. Parsons, R. J. Adams, S. W. Wilson, D. L. Stemple posted to development zebrafish by noano on 2006-06-29 10:01:51 as
	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted to human interactions physical proteins by noano on 2006-06-29 10:01:06 as along with 21 people and 2 groups yaredo fesousa aelef dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Evangelia csanford ksiek Complex Networks Bioinformatics
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted to biology modeling regulation review system by noano on 2006-06-29 10:00:01 as along with 27 people and 6 groups mjoach Borelli qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Bayesian network approach to cell signaling pathway modeling. [My Copy] Sci STKE, Vol. 2002, No. 148. (3 September 2002) by K. Sachs, D. Gifford, T. Jaakkola, P. Sorger, D. A. Lauffenburger posted to bayesian networks transcription by noano on 2006-06-29 09:37:20 as along with 5 people Borelli frohike dragonrez wnpx saman_vp
	Regulatory Blueprint for a Chordate Embryo [My Copy] Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187. by Kaoru S. Imai, Michael Levine, Nori Satoh, Yutaka Satou posted to development expression by noano on 2006-06-29 09:35:54 as along with 5 people and 3 groups emilyhare nirfriedman nickluscombe dquest Auger EisenLab EBI-regulation Dead 60's
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to biology integrative review system by noano on 2006-06-29 09:33:56 as along with 21 people and 4 groups daforerog shikin jimineep ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	The value of prior knowledge in discovering motifs with MEME. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 21-29. by T. L. Bailey, C. Elkan posted to binding motif sequence by noano on 2006-06-29 09:31:19 as along with 3 people Mehlhorn wowalz AaronDarling
	The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution. [My Copy] Science (24 November 2005) by Kyle Kai-How K. Farh, Andrew Grimson, Calvin Jan, et al.Benjamin P P. Lewis, Wendy K K. Johnston, Lee P P. Lim, Christopher B B. Burge, David P P. Bartel posted to microrna by noano on 2006-06-29 09:29:40 as along with 15 people and 4 groups daforerog jerlich mfenner aprasad dayjm marcius eckart_bindewald dpollard mortenlindow mtagaya lp2 heliopais Alexander_Kanitz jfr caseybrown EisenLab microRNA BioinfoCIPF SGU-CIPF
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted to bayesian binding expression motif networks sequence by noano on 2006-06-29 09:27:28 as along with 12 people and 6 groups rsaito thegoose2 winterschlaefer tharris ana xwbcn adepace nickluscombe koller jrest phoenixzxl klo TranscriptionalRegulationWithThermodynamicModels C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab EBI-regulation
	Genetic variation in human gene expression. [My Copy] Mamm Genome (12 June 2006) by Emmanouil T. Dermitzakis, Barbara E. Stranger posted to expression genotype hapmap snps by noano on 2006-06-29 09:25:22 as along with 4 people and 2 groups psique dpollard cmm djkt EisenLab FAB-lab
	Genome-wide associations of gene expression variation in humans. [My Copy] PLoS Genet, Vol. 1, No. 6. (December 2005) by B. E. Stranger, M. S. Forrest, A. G. Clark, et al.M. J. Minichiello, S. Deutsch, R. Lyle, S. Hunt, B. Kahl, S. E. Antonarakis, S. Tavaré, P. Deloukas, E. T. Dermitzakis posted to expression genotype hapmap snps by noano on 2006-06-29 09:24:05 as along with 10 people and 3 groups zufar pengchy psique adepace rdiaz qfwills ashandanj jo_davies cisevol shikin Bioinformatics EisenLab cis-regulatory-evolution
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to binding motif phylogenetics sequence by noano on 2006-06-29 09:22:29 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe adsmitty lusk lilou idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by N. Nariai, Y. Tamada, S. Imoto, S. Miyano posted to bayesian expression integrative interactions physical yeast by noano on 2006-06-29 09:11:21 as along with 2 people wnpx koller
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to complex interactions physical proteins by noano on 2006-06-29 09:07:38 as along with 30 people and 10 groups tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted to expression interactions networks by noano on 2006-06-29 09:06:47 as along with 15 people and 2 groups myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl koller frohike carlk kdl Bioinformatics
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to binding comparison motif sequence by noano on 2006-06-29 09:05:44 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Physical network models. [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262. by C. H. Yeang, T. Ideker, T. Jaakkola posted to bayesian expression integrative interactions networks physical by noano on 2006-06-29 09:04:18 as along with 3 people tmmurali wnpx koller
	Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. [My Copy] Science, Vol. 287, No. 5454. (4 February 2000), pp. 873-880. by C. J. Roberts, B. Nelson, M. J. Marton, et al.R. Stoughton, M. R. Meyer, H. A. Bennett, Y. D. He, H. Dai, W. L. Walker, T. R. Hughes, M. Tyers, C. Boone, S. H. Friend posted to expression mapk pathway yeast by noano on 2006-06-29 09:02:49 as along with 5 people SarahW kristallreiner nirfriedman koller carlk
	Computational discovery of transcriptional regulatory rules. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by T. H. Pham, J. C. Clemente, K. Satou, T. B. Ho posted to expression logical modules by noano on 2006-06-29 09:01:44 as
	Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. [My Copy] Pac Symp Biocomput (2001), pp. 422-433. by A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, R. A. Young posted to bayesian expression networks by noano on 2006-06-29 09:00:16 as along with 2 people brl wnpx
	Combining location and expression data for principled discovery of genetic regulatory network models. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 437-449. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to bayesian expression location networks by noano on 2006-06-29 08:56:32 as along with 6 people stharward brl ldfu wnpx frohike naegele
	Discovering molecular pathways from protein interaction and gene expression data [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i264-272. by E. Segal, H. Wang, D. Koller posted to bayesian expression interactions physical by noano on 2006-06-29 08:55:15 as along with 7 people and 1 group yaredo jfr lfriedl wnpx bhaddow edwardmorrissey jiny kdl
	Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks. [My Copy] Pac Symp Biocomput (2004), pp. 336-347. by N. Nariai, S. Kim, S. Imoto, S. Miyano posted to bayesian expression interactions physical by noano on 2006-06-29 08:54:01 as along with 2 people wnpx Borelli
	Identifying regulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genetics, Vol. 29, No. 2. (10 September 2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted to expression motifs networks sequence by noano on 2006-06-29 08:43:13 as along with 8 people and 1 group ipark-kaist farhat imouthesmp troels_marstrand xwbcn wnpx koller windman83 Bioinformatics
	Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis. [My Copy] Mol Biol Cell, Vol. 15, No. 2. (February 2004), pp. 532-542. by S. M. O'Rourke, I. Herskowitz posted to expression mapk osmolarity pathway yeast by noano on 2006-06-28 17:32:50 as along with 1 person mmcclean
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to interactions pathway physical regulation by noano on 2006-06-28 17:30:55 as along with 14 people and 1 group kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx koller ccr cdppublications AlexanderPico carlk jago CDP
	Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits. [My Copy] Hum Mol Genet, Vol. 15, No. 3. (1 February 2006), pp. 481-492. by H. Li, H. Chen, L. Bao, et al.K. F. Manly, E. J. Chesler, L. Lu, J. Wang, M. Zhou, R. W. Williams, Y. Cui posted to genotype modules networks by noano on 2006-06-28 17:25:04 as along with 3 people balicea fisherp koller
	Dissecting asthma using focused transgenic modeling and functional genomics [My Copy] Journal of Allergy and Clinical Immunology, Vol. 116, No. 2. (August 2005), pp. 305-311. by Douglas A. Kuperman, Christina C. Lewis, Prescott G. Woodruff, et al.Madeleine W. Rodriguez, Yee H. Yang, Gregory M. Dolganov, John V. Fahy, David J. Erle posted to asthma expression mice by noano on 2006-06-28 17:12:00 as
	Gene regulation by microRNAs. [My Copy] Curr Opin Genet Dev (23 February 2006) by Richard W W. Carthew posted to microrna by noano on 2006-06-28 17:08:57 as along with 9 people and 4 groups marcius eckart_bindewald tardigrade rodrigo dchughes mtagaya balabu cdawson heliopais microRNA BioinfoCIPF SGU-CIPF GIG

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expression	19
networks	10
interactions	9
bayesian	8
physical	8
sequence	6
binding	5
motif	5
yeast	5
integrative	4
modules	4
regulation	4
development	3
genotype	3
microrna	3
pathway	3
proteins	3
review	3
biology	2
hapmap	2
human	2
mapk	2
snps	2
system	2
asthma	1
comparison	1
complex	1
immunology	1
inflammation	1
location	1
logical	1
mice	1
modeling	1
motifs	1
osmolarity	1
pathways	1
phylogenetics	1
stochastic	1
transcription	1
zebrafish	1

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