nolodie's library 77 articles Export

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	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256. by M. E. J. Newman posted to networks by nolodie on 2008-01-23 21:54:31 as along with 36 people and 3 groups halukbingol jsaramak tomhebbron jotwin LaurentHD vmarceau qqwert mrkn ocs brihea chibatching davidecellai diamantis panisson spool deanmalmgren pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane shikin stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli Soslab Complex_Real_Networks EntrepreneurialRisks
	GUESS: a language and interface for graph exploration [My Copy] In CHI '06: Proceedings of the SIGCHI conference on Human Factors in computing systems (2006), pp. 791-800. by Eytan Adar posted to networks by nolodie on 2007-12-10 23:19:37 as along with 1 person mmcgloho
	Health information systems: Failure, success and improvisation. [My Copy] Int J Med Inform (19 August 2005) by Richard Heeks posted to healthinformatics by nolodie on 2008-07-17 19:09:54 as along with 2 people gustafsson libah
	Distribution of node characteristics in complex networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 46. (13 November 2007), pp. 17916-17920. by J. Park, A. L. Barabási posted to networks by nolodie on 2008-04-02 21:39:03 as along with 8 people daforerog davidecellai tmmurali cjeans bootsy roys JozefK Torsten_Holmer
	Statistical mechanics of complex networks [My Copy] Reviews of Modern Physics, Vol. 74, No. 1. (Jan 2002), pp. 47-97. by Réka Albert, Albert L. Barabási posted to networks by nolodie on 2008-02-20 15:47:20 as along with 47 people tessonec pak tjpp fastjoe23 mfuhr juhop conservatism mrkn hendysh pdlug davidecellai makrehchi MarkEveritt tnhh satch5841 ddahlem iris_2001 AnneB phreeza diamantis jmenche bruno alexphys eegilbert mullonc orahcio cmmorel itmeson mbliemel eyliu fukken cristinaalp merazzle kevina muraken babyone somasanyal jaspervoskuilen timflutre ransombriggs kikiblue7 e1000ian stefanoallesina jotwin ebalp spool jmchauvet
	The spatial structure of networks [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems, Vol. 49, No. 2. (6 January 2006), pp. 247-252. by M. T. Gastner, Newman posted to networks by nolodie on 2008-01-23 16:56:22 as
	The structure and function of networks [My Copy] Computer Physics Communications, Vol. 147, No. 1-2. (1 August 2002), pp. 40-45. by M. E. J. Newman posted to networks by nolodie on 2008-01-23 16:52:44 as along with 1 person matteodellamico
	The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical Data Repositories [My Copy] Journal of the American Medical Informatics Association, Vol. 16, No. 5. (30 June 2009), pp. 624-630. by G. M. Weber, S. N. Murphy, A. J. McMurry, et al.D. MacFadden, D. J. Nigrin, S. Churchill, I. S. Kohane posted to interoperability healthinformatics by nolodie on 2009-09-25 01:48:35 as along with 1 person lauras
	A survey of visualization tools for biological network analysis. [My Copy] Biodata mining, Vol. 1, No. 1. (28 November 2008), 12. by Georgios A. Pavlopoulos, Anna-Lynn L. Wegener, Reinhard Schneider posted to visualization networks biology by nolodie on 2009-09-25 01:41:55 as along with 13 people and 2 groups brianb abhishek_tiwari eesruiz daforerog lptolik guhjy renatomilani hersh006 behindtherabbit dswan fgibson allysonlister sjcockell ImagCom - Biomedical Text Computing Complex Networks
	Comparative analysis of neurological disorders focuses genome-wide search for autism genes [My Copy] Genomics, Vol. 93, No. 2. (February 2009), pp. 120-129. by D. Wall, F. Esteban, T. Deluca, et al.M. Huyck, T. Monaghan, N. Velezdemendizabal, J. Goni, I. Kohane posted to genetics medicine networks by nolodie on 2009-07-07 21:49:12 as along with 1 person daforerog
	Characterization of complex networks: A survey of measurements [My Copy] Advances in Physics, Vol. 56, No. 1. (2007), pp. 167-242. by Costa, F. A. Rodrigues, G. Travieso, Villas P. R. Boas posted to networks by nolodie on 2009-05-15 22:33:06 as along with 2 people and 1 group pick600 spool Network Analysis of Genes Regulated in Renal Diseases
	Boolean Modelingof Genetic Regulatory Networks [My Copy] Complex Networks (2004), pp. 459-481. by Réka Albert posted to genetics networks by nolodie on 2009-05-15 22:30:07 as along with 1 group Network Analysis of Genes Regulated in Renal Diseases
	A network of protein-protein interactions in yeast. [My Copy] Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261. by B. Schwikowski, P. Uetz, S. Fields posted to networks proteomics by nolodie on 2009-05-15 22:19:06 as along with 7 people and 1 group fisherp davidecellai dragonrez ichbins81 winterschlaefer jiny carlk Network Analysis of Genes Regulated in Renal Diseases
	Graph drawing by force-directed placement [My Copy] Software: Practice and Experience, Vol. 21, No. 11. (1991), pp. 1129-1164. by Thomas M. J. Fruchterman, Edward M. Reingold posted to networks visualization by nolodie on 2009-05-15 21:23:08 as along with 7 people and 1 group RaphaelWimmer tovrstra davidecellai ganden eyliu ianturton codex Network Analysis of Genes Regulated in Renal Diseases
	Mapping the Gnutella Network: Properties of Large-Scale Peer-to-Peer Systems and Implications for System Design [My Copy] (25 Sep 2002) by Matei Ripeanu, Ian Foster, Adriana Iamnitchi posted to networks by nolodie on 2009-05-15 18:09:37 as along with 1 group Network Analysis of Genes Regulated in Renal Diseases
	Detecting Fuzzy Community Structures in Complex Networks with a Potts Model [My Copy] Physical Review Letters, Vol. 93, No. 21. (2004) by Jörg Reichardt, Stefan Bornholdt posted to clustering networks by nolodie on 2009-05-15 17:56:23 as along with 7 people and 2 groups kubyaddi zufar phreeza fukken hannu marcio Diego_Prada Network Analysis of Genes Regulated in Renal Diseases ThinkTank
	Identification of overlapping community structure in complex networks using fuzzy cc-means clustering [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 374, No. 1. (15 January 2007), pp. 483-490. by S. Zhang, R. Wang, X. Zhang posted to clustering networks by nolodie on 2009-05-15 17:50:07 as along with 1 group Network Analysis of Genes Regulated in Renal Diseases
	Exploring complex networks [My Copy] Nature, Vol. 410, No. 6825. (08 March 2001), pp. 268-276. by Steven H. Strogatz posted to networks by nolodie on 2009-05-15 17:40:34 as along with 48 people and 10 groups leonglester makrehchi makukha vmarceau ganden conservatism donade nedwards MehdiMoussaid cswinburne lpfernandes jmenche tomhebbron camster sourada korakot A_Olympia KAllendoerfer mague shelleylyn ldietz Borelli cmmorel balicea rp311 wnpx matteodellamico ddahlem cmm float adexie scis0000001 merazzle muraken azygmunt qingyunlb timflutre rsantana cjeans fbaroni suizan karfunkel Evangelia e1000ian sala livingthingdan skumagai ebalp Network Analysis of Genes Regulated in Renal Diseases Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization NLP FAB-lab AGH-IISG dorm624 8_01
	Single-molecule DNA sequencing technologies for future genomics research [My Copy] Trends in Biotechnology, Vol. In Press, Corrected Proof by Pushpendra K. Gupta posted to genetics by nolodie on 2009-05-13 16:18:35 as along with 5 people dna guhjy inesdesantiago dchughes sg45653
	Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2007), pp. 548-552. by Shawn N. Murphy, Michael Mendis, Kristel Hackett, et al.Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian Gainer, David Berkowicz, John P. Glaser, Isaac Kohane, Henry C. Chueh posted to healthinformatics interoperability by nolodie on 2009-03-09 19:54:49 as
	Application of Protégé and SPARQL in the Field of Project Knowledge Management [My Copy] Systems and Networks Communications, 2007. ICSNC 2007. Second International Conference on In Systems and Networks Communications, 2007. ICSNC 2007. Second International Conference on (2007), pp. 74-74. by Hai Dong, F. K. Hussain, E. Chang posted to interoperability ontologies by nolodie on 2009-03-09 19:48:03 as
	Web and Semantic Web Query Languages: A Survey [My Copy] Lecture Notes in Computer Science, Vol. 3564 (2005), pp. 35-133. by James Bailey, Franã§ois Bry, Tim Furche, Sebastian Schaffert posted to healthinformatics interoperability ontologies by nolodie on 2009-03-09 19:46:15 as along with 1 person stephane-jean
	Pajek - Program for Large Network Analysis [My Copy] Connections, Vol. 21 (1998), pp. 47-57. by Vladimir Batagelj, Andrej Mrvar posted to no-tag by nolodie on 2008-12-16 11:25:46 as along with 1 person kkct200
	Mixing patterns in networks [My Copy] Physical Review E, Vol. 67, No. 2. (27 February 2003), 026126. by M. E. J. Newman posted to networks by nolodie on 2008-12-16 08:57:05 as along with 4 people jyew muraken jmenche ddahlem
	Assortative mixing in networks [My Copy] (20 May 2002) by M. E. J. Newman posted to no-tag by nolodie on 2008-12-16 08:42:55 as along with 5 people and 2 groups korakot MaineC merazzle daniel51 tomhebbron Philosophy_of_Information Blog_and_Wiki_Research
	Finding community structure in very large networks [My Copy] Physical Review E, Vol. 70, No. 6. (6 Dec 2004), 066111. by Aaron Clauset, M. E. J. Newman, Cristopher Moore posted to no-tag by nolodie on 2008-12-16 03:53:01 as along with 5 people studentx mattjb muraken cgaugain Diego_Prada
	Neighborhood Formation and Anomaly Detection in Bipartite Graphs [My Copy] In ICDM '05: Proceedings of the Fifth IEEE International Conference on Data Mining (2005), pp. 418-425. by Jimeng Sun, Huiming Qu, Deepayan Chakrabarti, Christos Faloutsos posted to networks by nolodie on 2008-12-13 22:02:39 as along with 1 person redmilk
	Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons [My Copy] Nucleic Acids Research, Vol. 34, No. 2. (2006), pp. e8-e8. by Bettina Harr, Christian Schlotterer posted to no-tag by nolodie on 2008-12-06 19:42:24 as along with 1 person robert85
	From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 37. by Rainer O. Rhein, Korbinian Strimmer posted to genetics networks by nolodie on 2008-11-27 02:50:07 as along with 8 people mqbphcw3 roys capitall druvus wnpx GeeSharpMinor jo_davies heliopais
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to genetics by nolodie on 2008-11-16 21:09:30 as along with 72 people and 7 groups mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 394-396. by O. Garcia, C. Saveanu, M. Cline, et al.M. Fromont-Racine, A. Jacquier, B. Schwikowski, T. Aittokallio posted to genetics networks by nolodie on 2008-11-16 21:07:31 as along with 1 person guhjy
	BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3448-3449. by S. Maere, K. Heymans, M. Kuiper posted to genetics networks by nolodie on 2008-11-16 21:07:05 as along with 3 people fbristow frohike natstreet
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to genetics networks by nolodie on 2008-11-16 21:06:35 as along with 33 people and 3 groups daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	COXPRESdb: a database of coexpressed gene networks in mammals. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by T. Obayashi, S. Hayashi, M. Shibaoka, M. Saeki, H. Ohta, K. Kinoshita posted to genetics networks by nolodie on 2008-11-03 00:42:27 as along with 6 people roys lawraga Garamonfok klo jeremymiller guhjy
	The clustering coefficient and community structure of bipartite networks [My Copy] (30 Sep 2007) by Peng Zhang, Jinliang Wang, Xiaojia Li, Zengru Di, Ying Fan posted to networks by nolodie on 2008-10-28 23:36:29 as along with 1 person trunov
	Conserved co-expression for candidate disease gene prioritization [My Copy] BMC Bioinformatics, Vol. 9 (23 April 2008), 208. by Martin Oti, Jeroen van Reeuwijk, Martijn A. Huynen, Han G. Brunner posted to medicine networks by nolodie on 2008-10-21 00:16:57 as along with 7 people and 1 group thegoose2 daforerog ptrobajo jeremymiller tharris barriot guhjy C. elegans / WormBase
	Random graphs with arbitrary degree distributions and their applications. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 2 Pt 2. (August 2001) by M. E. Newman, S. H. Strogatz, D. J. Watts posted to networks by nolodie on 2008-10-14 21:47:50 as along with 15 people and 1 group sergiun dylanwalker ganden blue-life123 kaarsinogen camster ansobol jrw ChaTo kubyaddi maqbes jaspervoskuilen ransombriggs peterlikarish navil dbk-lab
	Community structure in social and biological networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826. by M. Girvan, M. E. J. Newman posted to genetics networks by nolodie on 2008-10-13 01:44:07 as along with 44 people and 4 groups spool lawraga studentx ChaTo kubyaddi anhlc Adso orahcio dartar mattjb muraken cgaugain diamantis davidecellai qwermish pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina verdicchio compbio ellakat ganden chibatching jpbarrette Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
	Genetic network inference: from co-expression clustering to reverse engineering. [My Copy] Bioinformatics, Vol. 16, No. 8. (August 2000), pp. 707-726. by P. D'haeseleer, S. Liang, R. Somogyi posted to genetics networks by nolodie on 2008-10-09 03:01:17 as along with 5 people kemalpak knowlengr bayesian wnpx qfwills
	Network constrained clustering for gene microarray data [My Copy] Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4014-4020. by Dongxiao Zhu, Alfred O. Hero, Hong Cheng, Ritu Khanna, Anand Swaroop posted to genetics networks by nolodie on 2008-10-09 02:40:27 as along with 3 people abhik jfr wnpx
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to genetics networks by nolodie on 2008-10-08 22:07:45 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12182-12186. by A. J. Butte, P. Tamayo, D. Slonim, T. R. Golub, I. S. Kohane posted to genetics networks by nolodie on 2008-10-08 18:01:20 as along with 3 people cswinburne dragonrez ccots
	Gene co-expression network topology provides a framework for molecular characterization of cellular state [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2242-2250. by Scott L. Carter, Christian M. Brechbuhler, Michael Griffin, Andrew T. Bond posted to genetics networks by nolodie on 2008-10-08 17:58:28 as along with 2 people sficklin kengg
	Geometric Interpretation of Gene Coexpression Network Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to genetics networks by nolodie on 2008-10-08 15:54:51 as along with 21 people zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted to networks by nolodie on 2008-09-29 04:29:03 as along with 49 people tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr tomhebbron eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang kaarsinogen diamantis pgastrein qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
	Power laws, Pareto distributions and Zipf's law [My Copy] (1 December 2004) by M. E. J. Newman posted to networks by nolodie on 2008-09-29 04:28:21 as along with 56 people and 8 groups Gorzomagnificent halukbingol makrehchi jotwin pdlug klouie tnhh diamantis flips jfelipe eisdur BelliOS pietrosperoni egh korakot sccook sriks6711 mafwood A_Olympia JeffreyPalmer derek_farn ansobol devzero nigini yaroslavvb lubrifix mague mapio ecolab garyfeng ChaTo yishuai Borelli bayesian lyongu scottmoody balicea mukundn proportional entropy scis0000001 bigbossman cristinaalp merazzle sugarexpletive mp4man MoritzStefaner mylit gi0rgi0ne ejazasi salvoscellato ruffini skheller ulmer quianominorleo dylanwalker Soslab Philosophy_of_Information Blog_and_Wiki_Research ReadingLab 18th-century_history_culture_and_society semantic-multicast-routing Web2 EntrepreneurialRisks
	Assessing gene significance from cDNA microarray expression data via mixed models. [My Copy] J Comput Biol, Vol. 8, No. 6. (2001), pp. 625-637. by R. D. Wolfinger, G. Gibson, E. D. Wolfinger, et al.L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, R. S. Paules posted to genetics by nolodie on 2008-09-28 19:51:59 as along with 1 person RMGraze
	Construction, visualisation, and clustering of transcription networks from microarray expression data. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 2032-2042. by Tom C. Freeman, Leon Goldovsky, Markus Brosch, et al.Stijn van Dongen, Pierre Mazière, Russell J. Grocock, Shiri Freilich, Janet Thornton, Anton J. Enright posted to genetics networks by nolodie on 2008-09-27 02:49:22 as along with 9 people ptrobajo jwhitney guhjy jfr sebastien_vigneau giovanni shigepong heliopais waszak
	A network biology approach to prostate cancer [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Ayla Ergun, Carolyn A. Lawrence, Michael A. Kohanski, Timothy A. Brennan, James J. Collins posted to genetics medicine networks by nolodie on 2008-09-19 02:38:33 as along with 7 people and 1 group windman83 ptrobajo kentsis jfr ealloza mikaelhuss oelemento BioinfoCIPF
	From protein-disease associations to disease informatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 3391-3407. by M. M. Dalkilic, J. C. Costello, W. T. Clark, P. Radivojac posted to medicine by nolodie on 2008-09-18 04:03:16 as along with 1 person carlk