YADA: a tool for taking the most out of high-resolution spectra Export

@article{citeulike:5455191, abstract = {Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada Contact: paulo@pcarvalho.com Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp489}, author = {Carvalho, Paulo C. and Xu, Tao and Han, Xuemei and Cociorva, Daniel and Barbosa, Valmir C. and Yates, John R.}, citeulike-article-id = {5455191}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp489}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/20/2734.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/20/2734.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19684088}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19684088}, day = {15}, doi = {10.1093/bioinformatics/btp489}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {ms, ocbn, proteomics}, month = {October}, number = {20}, pages = {2734--2736}, posted-at = {2009-08-20 22:23:45}, priority = {2}, title = {YADA: a tool for taking the most out of high-resolution spectra}, url = {http://dx.doi.org/10.1093/bioinformatics/btp489}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5455191 L3 - citeulike-article-id:5455191 N2 - Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada Contact: paulo@pcarvalho.com Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp489 IS - 20 JF - Bioinformatics SN - 1460-2059 EP - 2736 TI - YADA: a tool for taking the most out of high-resolution spectra VL - 25 SP - 2734 KW - ms KW - ocbn KW - proteomics AU - Carvalho, Paulo AU - Xu, Tao AU - Han, Xuemei AU - Cociorva, Daniel AU - Barbosa, Valmir AU - Yates, John PY - 2009/10/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp489 ER -