SnoopCGH: software for visualizing comparative genomic hybridization data Export

@article{citeulike:5458503, abstract = {Summary: Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data. Availability and implementation: SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/ Contact: jg10@sanger.ac.uk; tc5@sanger.ac.uk 10.1093/bioinformatics/btp488}, author = {Almagro-Garcia, Jacob and Manske, Magnus and Carret, Celine and Campino, Susana and Auburn, Sarah and MacInnis, Bronwyn L. and Maslen, Gareth and Pain, Arnab and Newbold, Christopher I. and Kwiatkowski, Dominic P. and Clark, Taane G.}, citeulike-article-id = {5458503}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp488}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/20/2732.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/20/2732.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19687029}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19687029}, day = {15}, doi = {10.1093/bioinformatics/btp488}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {cgh, visualization}, month = {October}, number = {20}, pages = {2732--2733}, posted-at = {2009-08-20 22:21:27}, priority = {2}, title = {SnoopCGH: software for visualizing comparative genomic hybridization data}, url = {http://dx.doi.org/10.1093/bioinformatics/btp488}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5458503 L3 - citeulike-article-id:5458503 N2 - Summary: Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data. Availability and implementation: SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/ Contact: jg10@sanger.ac.uk; tc5@sanger.ac.uk 10.1093/bioinformatics/btp488 IS - 20 JF - Bioinformatics SN - 1460-2059 EP - 2733 TI - SnoopCGH: software for visualizing comparative genomic hybridization data VL - 25 SP - 2732 KW - cgh KW - visualization AU - Almagro-Garcia, Jacob AU - Manske, Magnus AU - Carret, Celine AU - Campino, Susana AU - Auburn, Sarah AU - MacInnis, Bronwyn AU - Maslen, Gareth AU - Pain, Arnab AU - Newbold, Christopher AU - Kwiatkowski, Dominic AU - Clark, Taane PY - 2009/10/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp488 ER -