nuin's identification [34 articles] Export

Recent papers added to nuin's library classified by the tag identification. You can also see everyone's identification.

	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to snp identification alignment by nuin on 2009-09-22 14:53:47 as along with 7 people jasontsai jsatkosk daforerog djkt operon n00c druvus
	Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist [My Copy] Brief Bioinform, Vol. 10, No. 5. (24 June 2009), pp. bbp032-536. by Jan Mrazek posted to identification motifs by nuin on 2009-07-03 23:06:22 as along with 4 people Vincent_Rouilly reyez nyyu druvus
	Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms [My Copy] Bioinformatics (8 April 2009), btp241. by Triinu Koressaar, Kai Joers, Maido Remm posted to identification sequence by nuin on 2009-06-05 17:48:26 as along with 1 person and 1 group druvus iSEEM
	Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), e60. by Vivek Jayaswal, Mark Lutherborrow, David D. F. Ma, Yee Hwa Yang posted to identification mirna by nuin on 2009-04-15 14:39:34 as along with 6 people and 1 group sterovetta tonamswish guhjy ericsuh ealloza pengchy microRNA
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted to identification motifs by nuin on 2009-03-24 23:30:18 as along with 5 people and 1 group svenrahmann cassj idonaldson maximilianh ElenaGrassi cube_and_beyond
	Current tools for the identification of miRNA genes and their targets [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (18 March 2009), pp. gkp145-2433. by N. D. Mendes, A. T. Freitas, M. F. Sagot posted to identification mirna by nuin on 2009-03-24 21:25:27 as along with 16 people and 1 group hzoltan heliopais orzenil leemond31 tonamswish gdb ptrobajo guhjy dakelley GustavoLacerda giovenko natstreet druvus valeriehilgers pengchy daforerog microRNA
	CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 495. by Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan J. van Ommen, Johan T. den Dunnen, Peter A. 't Hoen posted to motifs identification by nuin on 2008-12-05 03:51:21 as along with 9 people and 1 group farhat avilella heliopais lptolik nklee GustavoLacerda natstreet maximilianh druvus Ensembl Compara citations
	NITPICK: peak identifcation for mass spectrometry data [My Copy] BMC Bioinformatics, Vol. 9 (28 August 2008), 355. by Bernhard Y. Renard, Marc Kirchner, Hanno Steen, Judith A. J. Steen, Fred A. Hamprecht posted to identification ms ocbn peak by nuin on 2008-09-04 01:14:21 as along with 2 people sjcockell guhjy
	Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by L. Käll, J. D. Storey, W. S. Noble posted to identification ms peptides by nuin on 2008-08-12 18:10:46 as
	Identification of transcription factor binding sites with variable-order Bayesian networks [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2657-2666. by I. Ben-Gal, A. Shani, A. Gohr, et al.J. Grau, S. Arviv, A. Shmilovici, S. Posch, I. Grosse posted to bayes identification motifs by nuin on 2008-06-26 18:22:34 as along with 4 people ggallone Mehlhorn mgledi lyongu
	AthaMap: from in silico data to real transcription factor binding sites. [My Copy] In silico biology, Vol. 6, No. 3. (2006), pp. 243-252. by L. Bülow, N. O. Steffens, C. Galuschka, M. Schindler, R. Hehl posted to identification motifs software by nuin on 2008-06-26 18:21:36 as
	dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2619-2621. by Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim posted to identification motifs by nuin on 2008-06-26 18:19:25 as along with 3 people maximilianh idonaldson isimpson
	Integrating regulatory motif discovery and genome-wide expression analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 6. (18 March 2003), pp. 3339-3344. by Erin M. Conlon, Shirley X. Liu, Jason D. Lieb, Jun S. Liu posted to identification motifs by nuin on 2008-06-26 18:15:38 as along with 3 people wowalz danish_punter maximilianh
	Method for identifying transcription factor binding sites in yeast [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1675-1681. by Huai-Kuang Tsai, Grace T. Huang, Meng-Yuan Chou, Henry H. Lu, Wen-Hsiung Li posted to identification methods motifs by nuin on 2008-06-26 18:14:44 as along with 1 person dquest
	Finding motifs from all sequences with and without binding sites. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 18. (15 September 2006), pp. 2217-2223. by H. C. Leung, F. Y. Chin posted to identification motifs by nuin on 2008-06-26 18:13:32 as along with 3 people wowalz eckart_bindewald dquest
	Large-Scale Turnover of Functional Transcription Factor Binding Sites in <italic>Drosophila</italic> [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (13 October 2006), e130. by Alan M. Moses, Daniel A. Pollard, David A. Nix, et al.Venky N. Iyer, Xiao-Yong Li, Mark D. Biggin, Michael B. Eisen posted to identification motifs by nuin on 2008-06-26 18:10:10 as along with 3 people and 1 group gdb daveGerrard nickluscombe EBI-regulation
	Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. [My Copy] Nucleic acids research, Vol. 32, No. 9. (2004), pp. 2889-2900. by G. Kreiman posted to identification motifs by nuin on 2008-06-26 18:07:38 as along with 1 person maximilianh
	Analysis of promoter regions of co-expressed genes identified by microarray analysis [My Copy] BMC Bioinformatics, Vol. 7 (17 August 2006), 384. by Srinivas Veerla, Mattias Hoglund posted to identification motifs by nuin on 2008-06-26 15:39:05 as along with 6 people and 1 group greg jfr gpalidwor giovanni SeungjoonOh heliopais GeschwindLab
	Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by Davide Cora, Ferdinando Di Cunto, Paolo Provero, Lorenzo Silengo, Michele Caselle posted to identification motifs by nuin on 2008-06-26 15:35:05 as along with 1 person nklee
	Ab initio identification of putative human transcription factor binding sites by comparative genomics. [My Copy] BMC bioinformatics, Vol. 6 (2005) by D. Corà, C. Herrmann, C. Dieterich, F. Di Cunto, P. Provero, M. Caselle posted to identification motifs by nuin on 2008-06-26 15:34:27 as along with 1 person nklee
	Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 May 2007), 174. by Davide Cora, Ferdinando Di Cunto, Michele Caselle, Paolo Provero posted to identification motifs by nuin on 2008-06-26 15:34:09 as along with 4 people and 2 groups andersbj mtagaya GustavoLacerda bertelsen Bioinformatics microRNA
	Identification of conserved regulatory elements by comparative genome analysis [My Copy] Journal of Biology, Vol. 2 (May 2003) by Boris Lenhard, Albin Sandelin, Luis Mendoza, Pär Engström, Niclas Jareborg, Wyeth W. Wasserman posted to identification by nuin on 2008-06-26 12:54:49 as
	Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping [My Copy] BMC Bioinformatics, Vol. 9 (xx 2008) posted to identification by nuin on 2008-06-26 12:54:33 as
	Molecular identification of ERalpha-positive breast cancer cells by the expression profile of an intrinsic set of estrogen regulated genes [My Copy] Journal of Cellular Physiology, Vol. 200 (xx 2004), pp. 440-450. by Alessandro Weisz, Walter Basile, Claudio Scafoglio, et al.Lucia Altucci, Francesco Bresciani, Angelo Facchiano, Piero Sismondi, Luigi Cicatiello, Michele De Bortoli posted to identification by nuin on 2008-06-26 12:54:27 as
	Statistical methods for identifying yeast cell cycle transcription factors [My Copy] Proceedings of the National Academy of Sciences, Vol. 102 (xx 2005) posted to identification by nuin on 2008-06-26 12:54:20 as
	Identification of Common Transcriptional Regulatory Elements in Interleukin-17 Target Genes [My Copy] Journal of Biological Chemistry, Vol. 281 (Jun 2006) by Fang Shen, Zihua Hu, Jaya Goswami, Sarah L. Gaffen posted to identification by nuin on 2008-06-26 12:54:20 as
	Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis [My Copy] BMC Bioinformatics, Vol. 6 (xx 2005) posted to identification by nuin on 2008-06-26 12:54:20 as
	Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test. [My Copy] BMC Bioinformatics, Vol. 6 (xx 2005) posted to identification by nuin on 2008-06-26 12:54:20 as
	A new systematic computational approach to predicting target genes of transcription factors [My Copy] Nucleic Acids Research, Vol. 35 (xx 2007) posted to identification by nuin on 2008-06-26 12:54:20 as
	Genome-wide analysis of factors regulating gene expression in liver. [My Copy] Gene, Vol. 389 (Mar 2007), pp. 114-121. by Andreas Teufel, Arndt Weinmann, Markus Krupp, Matthias Budinger, Peter R. Galle posted to identification by nuin on 2008-06-26 12:54:20 as
	TFBS identification based on genetic algorithm with combined representations and adaptive post-processing [My Copy] Bioinformatics, Vol. 24 (xx 2008) posted to identification by nuin on 2008-06-26 12:54:19 as
	Reliable prediction of transcription factor binding sites by phylogenetic verification [My Copy] Proc Natl Acad Sci U S A, Vol. 102 (Nov 2005), pp. 16945-16950. by Xiaoman Li, Sheng Zhong, Wing H. Wong posted to identification by nuin on 2008-06-26 12:54:16 as
	MUSA: a parameter free algorithm for the identification of biologically significant motifs [My Copy] Bioinformatics, Vol. 22 (Dec 2006) by Nuno Mendes, Ana Casimiro, Pedro Santos, Isabel S. Correia, Arlindo Oliveira, Ana Freitas posted to identification by nuin on 2008-06-26 12:54:16 as
	GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs [My Copy] Nucleic acids research, Vol. 35 (Jan 2007), pp. D116-21. by Anil G. Jegga, Jing Chen, Sivakumar Gowrisankar, et al.Mrunal A. Deshmukh, Rangachandra Gudivada, Sue Kong, Vivek Kaimal, Bruce J. Aronow posted to identification by nuin on 2008-06-26 12:54:16 as

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alignment	114
motifs	91
ocbn	66
phylogenetics	58
proteomics	58
ms	38
microarray	35
analysis	34
evolution	34
identification	34
bioinformatics	32
genomics	30
sequence	28
visualization	27
metabolomics	25
clustering	24
database	20
bayes	19
cancer	19
software	15
new_paper	14
protein	14
comparison	13
detection	13
bjarnason	12
genome	12
mirna	12
next-generation-sequencing	12
prediction	12
scoring	12
data	11
simulation	11
rna	10
acgh	9
fdr	9
finding	9
meta-analysis	9
r	9
tool	9
dna	8
expression	8
biomarker	7
discovery	7
melanoma	7
sequencing	7
genetics	6
gibbs	6
mapping	6
metagenomics	6
science2	6
selection	6
algorithm	5
annotation	5
assembly	5
bioconductor	5
chromosome	5
citation	5
classification	5
data-mining	5
distance	5
markov	5
mouse	5
prostate	5
science	5
virus	5
breakpoints	4
cgh	4
coalescent	4
estimation	4
gene	4
indel	4
methods	4
pipeline	4
population	4
population-genetics	4
quantitative	4
short-read	4
similarities	4
synteny	4
transcription	4
webservices	4
alu	3
assortative-matings	3
cnv	3
drift	3
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hmm	3
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similarity	3
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tree	3
404	2
accuracy	2
agilent	2
alleles	2
automatic	2
benner	2
birds	2
blast	2
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codon-usage	2
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pathways	2
patterns	2
peaks	2
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profiling	2
regulation	2
sergio	2
solexa	2
statistics	2
svm	2
taxon-sampling	2
testing	2
trees	2
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454	1
access	1
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api	1
array	1
art	1
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hidden-markov	1
homology	1
hpc	1
identifiers	1
images	1
immunology	1
indels	1
influence	1
informatics	1
information-theory	1
instability	1
interaction	1
interpreting	1
intragenic	1
introm	1
kegg	1
k-means	1
k-tuple	1
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microbial	1
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ml	1
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molecular-evolution	1
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nexus	1
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number	1
old	1
omics	1
organization	1
orthologs	1
osbn	1
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p53	1
paper-nar	1
parser	1
pcr	1
peak	1
peptides	1
phenotype	1
phylogeography	1
platform	1
plot	1
polytomies	1
pressure	1
prime-numbers	1
primer-design	1
probes	1
profile	1
programming-languages	1
projection	1
prostate_cancer_progression	1
protein-families	1
protein-protein	1
proteins	1
pten	1
pubmed	1
pwm	1
qa	1
quality	1
reconstruction	1
regex	1
reliability	1
religion	1
renal	1
replacement-matrix	1
resources	1
retenttion-time	1
robust	1
rrna	1
ruby_programming	1
scripting	1
secondary	1
semantics	1
sequence-profile	1
sequence-quality	1
service	1
signaling	1
simprot	1
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solid	1
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speciation	1
str	1
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suffix	1
supertrees	1
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tandem-duplication	1
technique	1
text	1
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tiliing-array	1
to_read	1
total-evidence	1
transposable-elements	1
tree-of-life	1
tree-selection-test	1
tron	1
vaccines	1
validation	1
variation	1
wiki	1
y-chromosome	1
zinc-fingers	1

nuin's identification [34 articles] Export

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