nuin's phylogenetics [58 articles] Export

Recent papers added to nuin's library classified by the tag phylogenetics. You can also see everyone's phylogenetics.

	Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology [My Copy] Science, Vol. 294, No. 5550. (14 December 2001), pp. 2310-2314. by John P. Huelsenbeck, Fredrik Ronquist, Rasmus Nielsen, Jonathan P. Bollback posted to phylogenetics bayes by nuin on 2009-10-29 14:14:38 as along with 9 people and 1 group operon seanyuan aprasad madhurjyag renewang bourscheid eustatic tny spavey FAB-lab
	Estimating the Transition/Transversion Ratio from Independent Pairwise Comparisons with an Assumed Phylogeny [My Copy] Journal of Molecular Evolution, Vol. 44, No. 1. (24 January 1997), pp. 112-119. by Andy Purvis, Lindell Bromham posted to phylogenetics by nuin on 2009-10-29 14:11:29 as along with 1 person operon
	Rooting with Multiple Outgroups: Consensus Versus Parsimony [My Copy] Cladistics, Vol. 14, No. 2. (1998), pp. 193-200. by Véronique Barriel, Pascal Tassy posted to phylogenetics by nuin on 2009-10-29 14:09:37 as along with 1 person operon
	Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. [My Copy] Journal of molecular evolution, Vol. 39, No. 3. (September 1994), pp. 306-314. by Z. Yang posted to phylogenetics maximum-likelihood by nuin on 2009-10-29 14:06:54 as along with 3 people operon gjuggler bpb
	PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (19 September 2009), 298. by Philippe Gouret, Julie Thompson, Pierre Pontarotti posted to regex phylogenetics patterns by nuin on 2009-09-28 17:28:06 as along with 5 people and 2 groups rvosa stajich scmelton druvus rschulz FAB-lab Mycology
	Improving phylogenetic analyses by incorporating additional information from genetic sequence databases [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2530-2536. by Li-Jung Liang, Robert E. Weiss, Benjamin Redelings, Marc A. Suchard posted to phylogenetics databases by nuin on 2009-09-22 14:52:44 as along with 4 people operon robfsouza aprasad gjuggler
	A phylogenetic and Markov model approach for the reconstruction of mutational pathways of drug resistance. [My Copy] Bioinformatics (Oxford, England) (3 August 2009), btp466. by Patricia Buendia, Brice Cadwallader, Victor Degruttola posted to phylogenetics evolution drug by nuin on 2009-09-22 14:50:39 as along with 1 person phoenixzxl
	TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2440-2441. by Lin Himmelmann, Dirk Metzler posted to programming phylogenetics bioinformatics by nuin on 2009-09-11 02:20:14 as along with 2 people and 1 group nlapalu djkt iSEEM
	Maximum similarity: a new formulation of phylogenetic reconstruction. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 887-896. by X. Huang, M. Vingron posted to methods phylogenetics similarity by nuin on 2009-07-14 12:56:18 as
	PHY.FI: fast and easy online creation and manipulation of phylogeny color figures. [My Copy] BMC bioinformatics, Vol. 7 (22 June 2006), 315. by J. Fredslund posted to phylogenetics python by nuin on 2009-07-07 15:47:11 as along with 3 people and 1 group kshameer rvosa stajich FAB-lab
	PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2286-2288. by Nicolas Lartillot, Thomas Lepage, Samuel Blanquart posted to bayes phylogenetics by nuin on 2009-06-26 19:47:08 as along with 6 people and 1 group nesnidal djkt leemond31 operon grahamc phoenixzxl iSEEM
	Testing the accuracy of eukaryotic phylogenetic profiles for prediction of biological function. [My Copy] Evolutionary bioinformatics online, Vol. 4 (2008), pp. 217-223. by S. Singh, D. P. Wall posted to phylogenetics by nuin on 2009-06-05 17:47:42 as along with 1 person kiekyon
	Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers. [My Copy] Evolutionary bioinformatics online, Vol. 4 (2008), pp. 263-270. by H. A. Khan, I. A. Arif, A. H. Bahkali, A. H. Al Farhan, A. A. Al Homaidan posted to bayes parsimony phylogenetics by nuin on 2009-06-05 17:40:54 as
	Treevolution: visual analysis of phylogenetic trees. [My Copy] Bioinformatics (Oxford, England) (26 May 2009) by Rodrigo Santamaría, Roberto Therón posted to phylogenetics visualization by nuin on 2009-06-02 18:21:46 as along with 1 person jmeppley
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to motifs phylogenetics prediction by nuin on 2009-06-02 18:17:52 as along with 8 people and 3 groups dquest Stew marti Lombardo_7 megraw operon AlexBateman scjparker EisenLab Bioinformatics - CRUK Journal picks
	Many-core algorithms for statistical phylogenetics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1370-1376. by Marc A. Suchard, Andrew Rambaut posted to algorithm parallel phylogenetics by nuin on 2009-05-25 18:45:25 as along with 9 people and 1 group mlangill druvus AlexBateman bmajoros djkt jmeppley svenrahmann rdiaz Neeperando iSEEM
	STEM: Species Tree Estimation using Maximum likelihood for gene trees under coalescence [My Copy] Bioinformatics (10 February 2009), btp079. by Laura S. Kubatko, Bryan C. Carstens, Lacey L. Knowles posted to maximum-likelihood phylogenetics by nuin on 2009-04-15 14:35:52 as along with 3 people aprasad druvus djkt
	Phylogenetic Inference with Weighted Codon Evolutionary Distances [My Copy] Journal of Molecular Evolution by Alexis Criscuolo, Christian Michel posted to evolution phylogenetics by nuin on 2009-04-02 16:05:35 as
	Phylogenetic Signals in DNA Composition: Limitations and Prospects [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 1163-1169. by Jan Mrazek posted to dna phylogenetics by nuin on 2009-03-12 18:46:09 as along with 5 people and 1 group dakelley jmeppley skembel djkt druvus iSEEM
	Detecting Gene Clusters under Evolutionary Constraint in a Large Number of Genomes [My Copy] Bioinformatics (21 January 2009), btp027. by Xu Ling, Xin He, Dong Xin posted to clustering phylogenetics by nuin on 2009-03-12 18:24:15 as along with 6 people idoerg malcook druvus djkt grahamc Neeperando
	A hierarchical model for incomplete alignments in phylogenetic inference [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 592-598. by Fuxia Cheng, Stefanie Hartmann, Mayetri Gupta, Joseph G. Ibrahim, Todd J. Vision posted to phylogenetics by nuin on 2009-03-12 18:21:27 as along with 7 people and 1 group druvus skembel djkt mhamada jmeppley sriesenfeld jameswasmuth iSEEM
	Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Matteo Brilli, Alessio Mengoni, Marco Fondi, Marco Bazzicalupo, Pietro Lio, Renato Fani posted to blast phylogenetics by nuin on 2009-01-23 16:42:01 as along with 2 people taguchi druvus
	Is a new and general theory of molecular systematics emerging? [My Copy] Evolution; international journal of organic evolution, Vol. 63, No. 1. (January 2009), pp. 1-19. by Scott V. Edwards posted to phylogenetics systematics by nuin on 2009-01-23 16:37:51 as along with 2 people druvus aprasad
	Extended Newick: it is time for a standard representation of phylogenetic networks [My Copy] BMC Bioinformatics, Vol. 9 (15 December 2008), 532. by Gabriel, Gabriel Valiente posted to phylogenetics by nuin on 2009-01-04 17:26:05 as along with 4 people tny jmeppley druvus barriot
	SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (26 January 2009) by D. Wilson, R. Pethica, Y. Zhou, et al.C. Talbot, C. Vogel, M. Madera, C. Chothia, J. Gough posted to data-mining genomics phylogenetics by nuin on 2008-12-05 03:47:26 as along with 3 people dullhunk guhjy operon
	Stability of Multiple Alignments and Phylogenetic Trees: An Analysis of ABC-Transporter Proteins [My Copy] Algorithms for Molecular Biology, Vol. 3 (06 November 2008), 15. by Andreas W. M. Dress, Burkhard Morgenstern, Holger Wagner posted to alignment phylogenetics by nuin on 2008-11-17 00:23:00 as along with 2 people treangen druvus
	A Bayesian Perspective on a Non-parsimonious Parsimony Model [My Copy] Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 406-419. by Huelsenbeck, John, Ane, et al. Cecile, Larget, Bret, Ronquist, Fredrik posted to bayes phylogenetics by nuin on 2008-10-30 17:09:27 as
	DETECTION OF "PUNCTUATED EQUILIBRIUM" BY BAYESIAN ESTIMATION OF SPECIATION AND EXTINCTION RATES, ANCESTRAL CHARACTER STATES, AND RATES OF ANAGENETIC AND CLADOGENETIC EVOLUTION ON A MOLECULAR PHYLOGENY [My Copy] Evolution, Vol. 62, No. 11. (2008), pp. 2718-2726. by Folmer Bokma posted to bayes evolution phylogenetics by nuin on 2008-10-30 17:06:27 as
	The relative sensitivity of different alignment methods and character codings in sensitivity analysis [My Copy] Cladistics, Vol. 9999, No. 9999. (2008) by Mark P. Simmons, Kai F. Müller, Colleen T. Webb posted to alignment phylogenetics by nuin on 2008-10-30 16:55:05 as
	Clade support measures and their adequacy [My Copy] Cladistics, Vol. 9999, No. 9999. (2008) by Taran Grant, Arnold G. Kluge posted to phylogenetics support-values by nuin on 2008-10-30 16:54:41 as along with 1 person druvus
	TNT, a free program for phylogenetic analysis [My Copy] Cladistics, Vol. 24, No. 5. (2008), pp. 774-786. by Pablo A. Goloboff, James S. Farris, Kevin C. Nixon posted to phylogenetics by nuin on 2008-10-30 16:44:12 as along with 1 person druvus
	Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap [My Copy] Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 665-674. by Kim, Junhyong, Sanderson, Michael posted to phylogenetics by nuin on 2008-10-17 21:30:50 as along with 2 people skembel aprasad
	POPE - a tool to aid high-throughput phylogenetic analysis. [My Copy] Bioinformatics (Oxford, England) (10 October 2008) by Thorhildur Juliusdottir, Fredrik Pettersson, Richard R R. Copley posted to analysis phylogenetics by nuin on 2008-10-14 16:09:48 as along with 6 people operon renatomilani barriot behindtherabbit treangen druvus
	The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree. [My Copy] Journal of molecular evolution (12 August 2008) by Jeffrey P. Townsend, Francesc López-Giráldez, Robert Friedman posted to phylogenetics by nuin on 2008-10-10 20:17:43 as along with 2 people francesclopez gjuggler
	Empirical profile mixture models for phylogenetic reconstruction. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2317-2323. by l. e. . S. Quang, O. Gascuel, N. Lartillot posted to models phylogenetics by nuin on 2008-10-10 20:08:26 as along with 1 person druvus
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to indel phylogenetics by nuin on 2008-10-10 20:06:23 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray zwang timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (19 September 2008), 386. by F. Meyer, D. Paarmann, M. D'Souza, et al.R. Olson, E. M. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, J. Wilkening, R. A. Edwards posted to metagenomics phylogenetics by nuin on 2008-10-10 19:14:39 as along with 8 people taylor73 idoerg Thaverkamp druvus guhjy operon ojabado neils
	Phylogenetic distances are encoded in networks of interacting pathways [My Copy] Bioinformatics (26 September 2008), btn503. by Aurelien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck posted to pathways phylogenetics by nuin on 2008-10-10 19:04:36 as along with 4 people and 1 group behindtherabbit markchen djkt renatomilani iSEEM
	PhySIC_IST: cleaning source trees to infer more informative supertrees [My Copy] BMC Bioinformatics, Vol. 9 (04 October 2008), 413. by Celine Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez posted to phylogenetics tree by nuin on 2008-10-10 19:03:33 as along with 1 person and 1 group stajich Mycology
	PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. [My Copy] Nucleic acids research (2 October 2008) by Tim Hulsen, Peter M A M. Groenen, Jacob de Vlieg, Wynand Alkema posted to database phylogenetics by nuin on 2008-10-10 19:01:57 as along with 2 people and 1 group druvus stajich Mycology
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted to analysis metagenomics phylogenetics by nuin on 2008-10-10 19:01:26 as along with 5 people and 3 groups vaulot jlgreen Thaverkamp treangen ojabado Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Descendants of Whole Genome Duplication within Gene Order Phylogeny. [My Copy] Journal of computational biology : a journal of computational molecular cell biology (12 September 2008) by Chunfang Zheng, Qian Zhu, David Sankoff posted to duplication phylogenetics by nuin on 2008-09-19 15:42:38 as along with 2 people AaronDarling druvus
	BEST: Bayesian estimation of species trees under the coalescent model [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2542-2543. by Liang Liu posted to bayes coalescent phylogenetics by nuin on 2008-09-19 15:34:02 as along with 6 people lizbiogen robfsouza AaronDarling gjuggler druvus alexeid
	StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees. [My Copy] Bioinformatics (Oxford, England) (27 August 2008) by Adám Novák, István Miklós, Rune Lyngsø, Jotun Hein posted to phylogenetics new_paper alignment by nuin on 2008-09-04 01:13:52 as along with 4 people and 1 group vivianm treangen stajich druvus Mycology
	Bosque: Integrated phylogenetic analysis software. [My Copy] Bioinformatics (Oxford, England) (1 September 2008) by Salvador Ramírez-Flandes, Osvaldo Ulloa posted to phylogenetics software by nuin on 2008-09-04 01:07:36 as along with 5 people and 2 groups operon cgaugain treangen druvus vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment phylogenetics by nuin on 2008-08-01 11:17:02 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen Khavkin's lab iSEEM Green Lab
	An exact algorithm for the geodesic distance between phylogenetic trees. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 577-591. by A. Kupczok, A. V. Haeseler, S. Klaere posted to phylogenetics trees by nuin on 2008-07-30 18:57:01 as along with 1 person sriesenfeld
	EPoS: a modular software framework for phylogenetic analysis [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2399-2400. by Thasso Griebel, Malte Brinkmeyer, Sebastian Bocker posted to bioinformatics phylogenetics by nuin on 2008-07-30 18:54:16 as along with 2 people operon druvus
	Genomic signature: characterization and classification of species assessed by chaos game representation of sequences [My Copy] Mol Biol Evol, Vol. 16, No. 10. (1 October 1999), pp. 1391-1399. by P. J. Deschavanne, A. Giron, J. Vilain, G. Fagot, B. Fertil posted to birds phylogenetics sergio by nuin on 2008-06-26 15:23:30 as along with 1 person azazello
	A genomic schism in birds revealed by phylogenetic analysis of DNA strings. [My Copy] Systematic biology, Vol. 51, No. 4. (August 2002), pp. 599-613. by S. V. Edwards, B. Fertil, A. Giron, P. J. Deschavanne posted to birds phylogenetics sergio by nuin on 2008-06-26 15:21:08 as

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nuin's phylogenetics [58 articles] Export

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