nuke2005's library 42 articles Export

	SCOP database in 2004: refinements integrate structure and sequence family data. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by A. Andreeva, D. Howorth, S. E. Brenner, T. J. Hubbard, C. Chothia, A. G. Murzin posted to no-tag by nuke2005 on 2005-09-26 02:56:34 as along with 5 people timhubbard reyez tjimenez chad_davis phoenixzxl
	The evolution of genetic regulatory systems in bacteria. [My Copy] Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178. by H. H. McAdams, B. Srinivasan, A. P. Arkin posted to no-tag by nuke2005 on 2005-09-26 02:56:21 as along with 4 people lingchong balajis ryang heliopais
	Functional genome annotation through phylogenomic mapping [My Copy] Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698. by Balaji S. Srinivasan, Nora B. Caberoy, Garret Suen, et al.Rion G. Taylor, Radhika Shah, Farah Tengra, Barry S. Goldman, Anthony G. Garza, Roy D. Welch posted to no-tag by nuke2005 on 2005-09-26 02:56:11 as along with 11 people and 1 group operon setar tmmurali pggm aprasad balajis lyongu nedwards shoshin blobbybirdman kroos Myxo group
	A promoter for the first nine genes of the Escherichia coli mra cluster of cell division and cell envelope biosynthesis genes, including ftsI and ftsW. [My Copy] J Bacteriol, Vol. 179, No. 18. (September 1997), pp. 5802-5811. by H. Hara, S. Yasuda, K. Horiuchi, J. T. Park posted to no-tag by nuke2005 on 2005-09-26 02:55:54 as
	Bacterial mitotic machineries. [My Copy] Cell, Vol. 116, No. 3. (6 February 2004), pp. 359-366. by K. Gerdes, J. Møller-Jensen, G. Ebersbach, T. Kruse, K. Nordström posted to no-tag by nuke2005 on 2005-09-26 02:55:37 as
	Identification and characterization of novel competence genes comA and exbB involved in natural genetic transformation of Pseudomonas stutzeri. [My Copy] Res Microbiol, Vol. 152, No. 5. (June 2001), pp. 451-460. by S. Graupner, W. Wackernagel posted to no-tag by nuke2005 on 2005-09-26 02:55:19 as along with 1 person balajis
	DNA uptake during bacterial transformation. [My Copy] Nat Rev Microbiol, Vol. 2, No. 3. (March 2004), pp. 241-249. by I. Chen, D. Dubnau posted to no-tag by nuke2005 on 2005-09-26 02:54:53 as along with 3 people dayjm treangen karfunkel
	Dications that target the DNA minor groove: compound design and preparation, DNA interactions, cellular distribution and biological activity. [My Copy] Curr Med Chem Anti-Canc Agents, Vol. 5, No. 4. (July 2005), pp. 389-408. by W. D. Wilson, B. Nguyen, F. A. Tanious, et al.A. Mathis, J. E. Hall, C. E. Stephens, D. W. Boykin posted to no-tag by nuke2005 on 2005-09-26 02:54:15 as
	Thiophene-based diamidine forms a "super" at binding minor groove agent. [My Copy] J Am Chem Soc, Vol. 126, No. 42. (27 October 2004), pp. 13659-13669. by S. Mallena, M. P. Lee, C. Bailly, et al.S. Neidle, A. Kumar, D. W. Boykin, W. D. Wilson posted to no-tag by nuke2005 on 2005-09-26 02:53:55 as
	FlyBase: genes and gene models. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by R. A. Drysdale, M. A. Crosby, posted to no-tag by nuke2005 on 2005-09-26 02:53:37 as along with 2 people dragonrez GustavoLacerda
	WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by Nansheng Chen, Todd W. Harris, Igor Antoshechkin, et al.Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K. Chen, Wen J. Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M. Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M. Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W. Sternberg, Lincoln D. Stein posted to no-tag by nuke2005 on 2005-09-26 02:53:10 as along with 8 people rshe biomcgary thegoose2 paszkows rklancer maryee GustavoLacerda tharris
	Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. [My Copy] Nucleic Acids Res, Vol. 32 Database issue (1 January 2004) by K. R. Christie, S. Weng, R. Balakrishnan, et al.M. C. Costanzo, K. Dolinski, S. S. Dwight, S. R. Engel, B. Feierbach, D. G. Fisk, J. E. Hirschman, E. L. Hong, L. Issel-Tarver, R. Nash, A. Sethuraman, B. Starr, C. L. Theesfeld, R. Andrada, G. Binkley, Q. Dong, C. Lane, M. Schroeder, D. Botstein, J. M. Cherry posted to no-tag by nuke2005 on 2005-09-26 02:52:56 as along with 1 person and 1 group irenas dbk-lab
	DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 303-305. by Ioannis Xenarios, Lukasz Salwínski, Xiaoqun Joyce J. Duan, Patrick Higney, Sul-Min M. Kim, David Eisenberg posted to no-tag by nuke2005 on 2005-09-26 02:52:16 as along with 6 people chica mgomes balajis wnpx gurkanbebek carlk
	GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3710-3715. by E. I. Boyle, S. Weng, J. Gollub, et al.H. Jin, D. Botstein, J. M. Cherry, G. Sherlock posted to no-tag by nuke2005 on 2005-09-26 02:51:56 as along with 3 people and 1 group irenas balajis macavity1g dbk-lab
	A genomic perspective on protein families. [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637. by R. L. Tatusov, E. V. Koonin, D. J. Lipman posted to no-tag by nuke2005 on 2005-09-26 02:51:13 as along with 7 people coela bjorns balajis AaronDarling ruvido ninch Ema
	Weights for data related by a tree. [My Copy] J Mol Biol, Vol. 207, No. 4. (20 June 1989), pp. 647-653. by S. F. Altschul, R. J. Carroll, D. J. Lipman posted to no-tag by nuke2005 on 2005-09-26 02:50:56 as along with 3 people and 1 group BioNica souravc newton1234 iSEEM
	A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 376-383. by Y. Tohsato, H. Matsuda, A. Hashimoto posted to no-tag by nuke2005 on 2005-09-26 02:50:38 as along with 3 people calvin ziquje dragonrez
	PathBLAST: a tool for alignment of protein interaction networks. [My Copy] Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004) by Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker posted to no-tag by nuke2005 on 2005-09-26 02:50:19 as along with 7 people chica sergiun sza dragonrez AbnerCYH koller carlk
	A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters [My Copy] Nucl. Acids Res., Vol. 28, No. 20. (15 October 2000), pp. 4021-4028. by Hiroyuki Ogata, Wataru Fujibuchi, Susumu Goto, Minoru Kanehisa posted to no-tag by nuke2005 on 2005-09-26 02:49:59 as along with 5 people and 1 group suneilmohan lalgarve lfriedl balajis wnpx kdl
	Pathway alignment: application to the comparative analysis of glycolytic enzymes. [My Copy] Biochem J, Vol. 343 Pt 1 (1 October 1999), pp. 115-124. by T. Dandekar, S. Schuster, B. Snel, M. Huynen, P. Bork posted to no-tag by nuke2005 on 2005-09-26 02:49:42 as along with 1 person balajis
	Phylogenetic analysis of metabolic pathways. [My Copy] J Mol Evol, Vol. 52, No. 6. (June 2001), pp. 471-489. by C. V. Forst, K. Schulten posted to no-tag by nuke2005 on 2005-09-26 02:49:14 as along with 1 person balajis
	The Gene Ontology (GO) database and informatics resource [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D258-261. by Gene O. Consortium posted to no-tag by nuke2005 on 2005-09-26 02:48:53 as along with 11 people and 2 groups vkwn YukaH katerinakal setar balajis benny dullhunk bundschu sgoetz talponer waghsk mlkd generif_paper
	The KEGG resource for deciphering the genome [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D277-280. by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori posted to no-tag by nuke2005 on 2005-09-26 02:48:29 as along with 11 people and 1 group ipark-kaist tfuji mqbphcw3 irenas BragilMassoud lfriedl alexg bioinfo wnpx Garamonfok shung kdl
	Progressive sequence alignment as a prerequisite to correct phylogenetic trees. [My Copy] J Mol Evol, Vol. 25, No. 4. (1987), pp. 351-360. by D. F. Feng, R. F. Doolittle posted to no-tag by nuke2005 on 2005-09-26 02:48:06 as along with 5 people esyoun BioNica balajis AaronDarling newton1234
	Designing multiple simultaneous seeds for DNA similarity search. [My Copy] J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 847-861. by Y. Sun, J. Buhler posted to no-tag by nuke2005 on 2005-09-26 02:47:41 as along with 2 people treangen nedwards
	PatternHunter II: highly sensitive and fast homology search. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 14 (2003), pp. 164-175. by Ming Li, Bin Ma, Derek Kisman, John Tromp posted to no-tag by nuke2005 on 2005-09-26 02:47:12 as along with 3 people maria_hauser azazello treangen
	PatternHunter: faster and more sensitive homology search [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 440-445. by Bin Ma, John Tromp, Ming Li posted to no-tag by nuke2005 on 2005-09-26 02:46:39 as along with 10 people druvus maria_hauser mmartin umit catmat treangen natstreet nedwards DickSilver bozdagd
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to no-tag by nuke2005 on 2005-09-26 02:45:56 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Alignment of metabolic pathways. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3401-3408. by R. Y. Pinter, O. Rokhlenko, E. Yeger-Lotem, M. Ziv-Ukelson posted to no-tag by nuke2005 on 2005-09-26 02:45:16 as along with 2 people balajis maralena
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 835-846. by Roded Sharan, Trey Ideker, Brian Kelley, Ron Shamir, Richard M. Karp posted to no-tag by nuke2005 on 2005-09-26 02:44:36 as along with 3 people and 1 group carlk chica okarsligil Bioinformatics
	Conserved pathways within bacteria and yeast as revealed by global protein network alignment [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11394-11399. by Brian P. Kelley, Roded Sharan, Richard M. Karp, et al.Taylor Sittler, David E. Root, Brent R. Stockwell, Trey Ideker posted to no-tag by nuke2005 on 2005-09-26 02:44:01 as along with 10 people and 1 group chica emmackinnon okarsligil balajis gurkanbebek mirzazadeh denilw shu mdstobbe carlk Bioinformatics
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to no-tag by nuke2005 on 2005-09-26 02:43:39 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted to no-tag by nuke2005 on 2005-09-26 02:43:21 as along with 20 people and 3 groups snow_dragon freesci isotelesis eesruiz aelef jiny irenas lfriedl ccots balajis eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
	Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. [My Copy] Nat Genet, Vol. 16, No. 3. (July 1997), pp. 277-282. by M. Fromont-Racine, J. C. Rain, P. Legrain posted to no-tag by nuke2005 on 2005-09-26 02:43:04 as along with 2 people adiel gcalda
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted to no-tag by nuke2005 on 2005-09-26 02:42:29 as along with 34 people and 3 groups antonkratz potatongy drungows colmryan jplatig rsaito Neeperando baldigroup daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys kdl Bioinformatics BUiGEM
	A map of the interactome network of the metazoan C. elegans. [My Copy] Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal posted to no-tag by nuke2005 on 2005-09-26 02:42:10 as along with 14 people and 2 groups mgomes Scis0000002 lawraga thegoose2 semin cerca tharris shivaram lfriedl lyongu sesejun Chue carlk ksiek C. elegans / WormBase kdl
	A Protein Interaction Map of Drosophila melanogaster [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736. by L. Giot, J. S. Bader, C. Brouwer, et al.A. Chaudhuri, B. Kuang, Y. Li, Y. L. Hao, C. E. Ooi, B. Godwin, E. Vitols, G. Vijayadamodar, P. Pochart, H. Machineni, M. Welsh, Y. Kong, B. Zerhusen, R. Malcolm, Z. Varrone, A. Collis, M. Minto, S. Burgess, L. McDaniel, E. Stimpson, F. Spriggs, J. Williams, K. Neurath, N. Ioime, M. Agee, E. Voss, K. Furtak, R. Renzulli, N. Aanensen, S. Carrolla, E. Bickelhaupt, Y. Lazovatsky, A. DaSilva, J. Zhong, C. A. Stanyon, R. L. Finley, K. P. White, M. Braverman, T. Jarvie, S. Gold, M. Leach, J. Knight, R. A. Shimkets, M. P. McKenna, J. Chant, J. M. Rothberg posted to no-tag by nuke2005 on 2005-09-26 02:41:52 as along with 17 people and 2 groups nitxin mgomes semin diamantis dragonrez shivaram lfriedl lyongu sesejun maryee xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted to no-tag by nuke2005 on 2005-09-26 02:41:28 as along with 20 people and 2 groups aceol MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis kengg ruvido gcalda lpfernandes shikin hplatero csanford carlk kdl Bioinformatics
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by Roded Sharan, Silpa Suthram, Ryan M. Kelley, et al.Tanja Kuhn, Scott McCuine, Peter Uetz, Taylor Sittler, Richard M. Karp, Trey Ideker posted to no-tag by nuke2005 on 2005-09-26 02:41:10 as along with 18 people and 2 groups chica kiekyon thegoose2 robfsouza carlk tharris jiny sza dragonrez okarsligil balajis maryee gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
	Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". [My Copy] Genome research, Vol. 11, No. 12. (December 2001), pp. 2120-2126. by L. R. Matthews, P. Vaglio, J. Reboul, et al.H. Ge, B. P. Davis, J. Garrels, S. Vincent, M. Vidal posted to no-tag by nuke2005 on 2005-09-26 02:40:54 as along with 7 people and 2 groups rsaito thegoose2 cerca tharris lfriedl bluto cjeans C. elegans / WormBase kdl
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to no-tag by nuke2005 on 2005-09-26 02:40:38 as along with 27 people and 8 groups antonkratz dagmar biomcgary poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. [My Copy] DNA Res, Vol. 3, No. 3. (30 June 1996), pp. 109-136. by T. Kaneko, S. Sato, H. Kotani, et al.A. Tanaka, E. Asamizu, Y. Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, T. Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, S. Okumura, S. Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda, S. Tabata posted to no-tag by nuke2005 on 2005-09-26 02:40:04 as along with 1 person Cortel

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nuke2005's library 42 articles Export

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