nyyu's library 38 articles Export

	The Omp85 family of proteins is essential for outer membrane biogenesis in mitochondria and bacteria. [My Copy] J Cell Biol, Vol. 164, No. 1. (5 January 2004), pp. 19-24. by Ian Gentle, Kipros Gabriel, Peter Beech, Ross Waller, Trevor Lithgow posted to surface_proteins psortdb outer_membrane bacteria by nyyu on 2009-10-22 22:35:40 as along with 1 person pansapiens
	Lipoprotein biogenesis in Gram-positive bacteria: knowing when to hold 'em, knowing when to fold 'em. [My Copy] Trends in microbiology, Vol. 17, No. 1. (January 2009), pp. 13-21. by Matthew I. Hutchings, Tracy Palmer, Dean J. Harrington, Iain C. Sutcliffe posted to review psort lipoproteins gram_positive_bacteria gram-positive by nyyu on 2009-09-09 01:20:44 as
	Protein sorting to the cell wall envelope of Gram-positive bacteria. [My Copy] Biochimica et biophysica acta, Vol. 1694, No. 1-3. (11 November 2004), pp. 269-278. by Hung Ton-That, Luciano A. Marraffini, Olaf Schneewind posted to wall_anchor thesis surface_proteins secretory_pathway psortb_proportions psort gram_positive_bacteria gram-positive bacterial_cell_wall by nyyu on 2009-09-09 00:39:45 as
	The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. [My Copy] Nucleic acids research, Vol. 33, No. 17. (2005), pp. 5691-5702. by Ross Overbeek, Tadhg Begley, Ralph M. Butler, et al.Jomuna V. Choudhuri, Han-Yu Y. Chuang, Matthew Cohoon, Valérie de Crécy-Lagard, Naryttza Diaz, Terry Disz, Robert Edwards, Michael Fonstein, Ed D. Frank, Svetlana Gerdes, Elizabeth M. Glass, Alexander Goesmann, Andrew Hanson, Dirk Iwata-Reuyl, Roy Jensen, Neema Jamshidi, Lutz Krause, Michael Kubal, Niels Larsen, Burkhard Linke, Alice C. McHardy, Folker Meyer, Heiko Neuweger, Gary Olsen, Robert Olson, Andrei Osterman, Vasiliy Portnoy, Gordon D. Pusch, Dmitry A. Rodionov, Christian Rückert, Jason Steiner, Rick Stevens, Ines Thiele, Olga Vassieva, Yuzhen Ye, Olga Zagnitko, Veronika Vonstein posted to psortb_proportions network_biology network_analysis genomics database comparative_genomics bacterial_genomics bact archaea by nyyu on 2009-09-04 22:28:07 as along with 5 people coela mbeeby barriot jwortman balajis
	Bioinformatic comparison of bacterial secretomes. [My Copy] Genomics, proteomics & bioinformatics / Beijing Genomics Institute, Vol. 7, No. 1-2. (June 2009), pp. 37-46. by Catharine Song, Aseem Kumar, Mazen Saleh posted to secretome psortb_proportions psortb_data psort bacterial_genomics bacteria by nyyu on 2009-09-01 07:18:42 as
	Indicators from archaeal secretomes. [My Copy] Microbiological research (11 April 2008) by Mazen Saleh, Catharine Song, Sabah Nasserulla, L. G. Leduc posted to secretome psortb_proportions psortb_data psort archaea by nyyu on 2009-09-01 07:17:15 as along with 1 person neils
	Predicting weakly stable regions, oligomerization state, and protein–protein interfaces in transmembrane domains of outer membrane proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12735-12740. by Hammad Naveed, Ronald Jackups, Jie Liang posted to psort membrane_protein_prediction biochemistry beta_barrel_prediction by nyyu on 2009-08-20 21:19:44 as along with 1 person tcschen
	Outside the unusual cell wall of hyperthermophilic archaeon Aeropyrum pernix. [My Copy] Molecular & cellular proteomics : MCP (28 July 2009) by Gianna Palmieri, Raffaele Cannio, Immacolata Fiume, Mosé Rossi, Gabriella Pocsfalvi posted to surface_proteins psortb_data psort archaea by nyyu on 2009-08-19 23:59:39 as
	Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist [My Copy] Brief Bioinform, Vol. 10, No. 5. (24 June 2009), pp. bbp032-536. by Jan Mrazek posted to prokaryotic_genomics motif_discovery bioinformatics bacterial_genomics by nyyu on 2009-08-13 21:53:32 as along with 4 people Vincent_Rouilly reyez druvus nuin
	Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role. [My Copy] Extremophiles : life under extreme conditions, Vol. 13, No. 1. (30 January 2009), pp. 11-20. by G. Saelensminde, Ø. Halskau, I. Jonassen posted to protein_evolution protein_properties psortb_proportions by nyyu on 2009-07-15 19:39:57 as along with 2 people merj neils
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to protein_evolution protein_structure by nyyu on 2009-07-15 01:22:16 as along with 13 people and 3 groups dfdong mkotlyar skywalkerus02 dgront robfsouza apaydin barry coela Zephyrus sobolevnrm zwang friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	A comprehensive approach to identification of surface-exposed, outer membrane-spanning proteins of Leptospira interrogans. [My Copy] PloS one, Vol. 4, No. 6. (29 June 2009), e6071. by Marija Pinne, David A. Haake posted to psort psortb_data spirochetes surface_proteins by nyyu on 2009-07-10 21:41:41 as
	Long-distance delivery of bacterial virulence factors by Pseudomonas aeruginosa outer membrane vesicles. [My Copy] PLoS pathogens, Vol. 5, No. 4. (10 April 2009), e1000382. by J. M. Bomberger, D. P. Maceachran, B. A. Coutermarsh, S. Ye, G. A. O'Toole, B. A. Stanton posted to pseudomonas psort psortb_data secretome by nyyu on 2009-07-10 21:37:17 as along with 1 person Winzer
	Dynamics of Genome Rearrangement in Bacterial Populations [My Copy] PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128. by Aaron E. Darling, István Miklós, Mark A. Ragan posted to bacterial_evolution bacterial_genomics bioinformatics comparative_genomics genome_arrangement gram-negative multiple_alignment yersinia by nyyu on 2009-06-24 19:19:28 as along with 8 people AaronDarling lewista treangen neils druvus Ema djkt jjray
	Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. [My Copy] PloS one, Vol. 3, No. 4. (2008) by J. J. Gillespie, K. Williams, M. Shukla, et al.E. E. Snyder, E. K. Nordberg, S. M. Ceraul, C. Dharmanolla, D. Rainey, J. Soneja, J. M. Shallom, N. D. Vishnubhat, R. Wattam, A. Purkayastha, M. Czar, O. Crasta, J. C. Setubal, A. F. Azad, B. S. Sobral posted to bacterial_evolution bacterial_genomics comparative_genomics core_genome genomics phylogenetics psortb_proportions by nyyu on 2009-06-23 20:25:36 as
	The Nature and Dynamics of Bacterial Genomes [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1730-1733. by Howard Ochman, Liliana M. Davalos posted to bacterial_evolution bacterial_genomics comparative_genomics psortb_proportions by nyyu on 2009-06-23 00:11:00 as along with 8 people and 1 group karinlag operon dayjm cmm AaronDarling treangen perpetuale pkm FAB-lab
	Prevalence of transcription promoters within archaeal operons and coding sequences. [My Copy] Molecular systems biology, Vol. 5 (2009) by T. Koide, D. J. Reiss, J. C. Bare, et al.W. L. Pang, M. T. Facciotti, A. K. Schmid, M. Pan, B. Marzolf, P. T. Van, F. Y. Lo, A. Pratap, E. W. Deutsch, A. Peterson, D. Martin, N. S. Baliga posted to archaea comparative_genomics network_biology operons psortb_proportions transcriptional_regulatory_network by nyyu on 2009-06-22 23:55:09 as
	Evidence of extensive homologous recombination in the core genome of rickettsia. [My Copy] Comparative and functional genomics (2009) by J. Wu, T. Yu, Q. Bao, F. Zhao posted to bacterial_evolution bacterial_genomics bioinformatics comparative_genomics core_genome pangenome psortb_proportions rickettsia by nyyu on 2009-06-22 23:40:34 as along with 1 person druvus
	Toolbox model of evolution of prokaryotic metabolic networks and their regulation [My Copy] Proceedings of the National Academy of Sciences (29 May 2009) by Sergei Maslov, Sandeep Krishna, Tin Y. Pang, Kim Sneppen posted to bacterial_evolution bacterial_genomics bioinformatics comparative_genomics metabolism network_analysis network_biology transcriptional_regulatory_network by nyyu on 2009-06-17 19:33:00 as along with 3 people deanmalmgren cmtrent jjray
	Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens [My Copy] Nat Rev Micro, Vol. 7, No. 7. (July 2009), pp. 493-503. by Kirk W. Deitsch, Sheila A. Lukehart, James R. Stringer posted to ba bacterial_evolution bacterial_genomics pathogenomics by nyyu on 2009-06-16 19:06:39 as along with 2 people lamyvan dansullivanblk
	Synonymous genes explore different evolutionary landscapes. [My Copy] PLoS genetics, Vol. 4, No. 11. (14 November 2008), e1000256. by G. Cambray, D. Mazel posted to gene_evolution protein_evolution protein_function by nyyu on 2009-06-10 18:48:14 as along with 10 people and 2 groups michaelbarton daveGerrard fenghezi biosquidge nuin Zephyrus dbikard cambray djkt bpcusack R.E.A.D Bacterial Genome Plasticity
	Virulence factor secretion and translocation by Bordetella species [My Copy] Current Opinion in Microbiology, Vol. 12, No. 1. (February 2009), pp. 88-93. by Ruchi Shrivastava, Jeff F. Miller posted to gram-negative psort psortb_data psortb_proportions secretion_system t3ss t4ss by nyyu on 2009-05-15 19:12:45 as along with 1 person behindtherabbit
	The effector repertoire of enteropathogenic E. coli: ganging up on the host cell [My Copy] Current Opinion in Microbiology, Vol. 12, No. 1. (February 2009), pp. 101-109. by Paul Dean, Brendan Kenny posted to bacterial_genomics escherichia_coli genomics gram-negative pathogenomics psort psortb_data t3ss by nyyu on 2009-05-02 00:05:05 as along with 1 person mmourez
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to genomics multiple_alignment by nyyu on 2009-04-01 22:11:06 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang djkt semrich azazello mhamada
	Sequencing the species pan-genome [My Copy] Nature Reviews Microbiology, Vol. 7, No. 4., pp. 258-259. by Stephen Bentley posted to bacterial_genomics comparative_genomics news pangenome by nyyu on 2009-03-16 17:40:34 as
	Protein function annotation by homology-based inference [My Copy] Genome Biology, Vol. 10, No. 2. (2009) by Yaniv Loewenstein, Domenico Raimondo, Oliver Redfern, et al.James Watson, Dmitrij Frishman, Michal Linial, Christine Orengo, Janet Thornton, Anna Tramontano posted to gene_annotation protein_function by nyyu on 2009-03-14 06:58:25 as along with 3 people Keywan idoerg druvus
	Sequence-based feature prediction and annotation of proteins. [My Copy] Genome biology, Vol. 10, No. 2. (2 February 2009) by Agnieszka S. Juncker, Lars J. Jensen, Andrea Pierleoni, et al.Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita Casadio, Søren Brunak posted to bioinformatics gene_annotation protein_function by nyyu on 2009-03-14 06:57:32 as along with 5 people larsjuhljensen kgutwin shwu neils druvus
	The Challenge of Finding a Cure for HIV Infection [My Copy] Science, Vol. 323, No. 5919. (6 March 2009), pp. 1304-1307. by Douglas D. Richman, David M. Margolis, Martin Delaney, Warner C. Greene, Daria Hazuda, Roger J. Pomerantz posted to diseases hiv questions by nyyu on 2009-03-06 22:11:56 as along with 3 people and 1 group cwhitaker jenm09 wsjames Oxford Virology
	An African origin for the intimate association between humans and Helicobacter pylori [My Copy] Nature by Bodo Linz, François Balloux, Yoshan Moodley, et al.Andrea Manica, Hua Liu, Philippe Roumagnac, Daniel Falush, Christiana Stamer, Franck Prugnolle, Schalk W. van der Merwe, Yoshio Yamaoka, David Y. Graham, Emilio Perez-Trallero, Torkel Wadstrom, Sebastian Suerbaum, Mark Achtman posted to bacterial_evolution bacterial_genomics gram-negative h_pylori pangenome phylogeography population_biology psortb_proportions by nyyu on 2009-03-06 00:40:45 as along with 7 people and 2 groups carlk djkt guhjy oamg brembs xingxu Xavier iSEEM Glimcher_Lab
	Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens [My Copy] Annual Review of Microbiology, Vol. 62, No. 1. (2008), pp. 53-70. by Mark Achtman posted to bacterial_evolution bacterial_genomics epidemiology pathogenomics phylogeography population_biology by nyyu on 2009-03-06 00:23:32 as along with 5 people katholt miaohehe fedenborough druvus zwang
	HOBACGEN: Database System for Comparative Genomics in Bacteria [My Copy] Genome Research, Vol. 10, No. 3. (1 March 2000), pp. 379-385. by Guy Perrière, Laurent Duret, Manolo Gouy posted to bacterial_genomics comparative_genomics database psort psortb_proportions by nyyu on 2009-03-03 20:11:54 as
	Protein delivery into eukaryotic cells by type III secretion machines [My Copy] Nature, Vol. 444, No. 7119., pp. 567-573. by Jorge E. Galán, Hans Wolf-Watz posted to review t3ss t3ss_effector_signal by nyyu on 2009-02-27 19:36:55 as along with 5 people behindtherabbit dayjm aswin choonpeng saru
	Streptococcus thermophilus Core Genome: Comparative Genome Hybridization Study of 47 Strains [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 15. (1 August 2008), pp. 4703-4710. by Thomas B. Rasmussen, Morten Danielsen, Ondrej Valina, Christel Garrigues, Eric Johansen, Martin B. Pedersen posted to bacterial_genomics comparative_genomics core_genome gram-positive pangenome psortb_proportions streptococcus by nyyu on 2009-02-20 23:13:25 as
	The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. [My Copy] Journal of bacteriology, Vol. 190, No. 20. (October 2008), pp. 6881-6893. by David A. Rasko, M. J. Rosovitz, Garry S. Myers, et al.Emmanuel F. Mongodin, W. Florian Fricke, Pawel Gajer, Jonathan Crabtree, Mohammed Sebaihia, Nicholas R. Thomson, Roy Chaudhuri, Ian R. Henderson, Vanessa Sperandio, Jacques Ravel posted to bacterial_evolution bacterial_genomics comparative_genomics escherichia_coli grem-negative pangenome psortb_proportions by nyyu on 2009-02-20 23:11:49 as along with 2 people azazello druvus
	Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR) [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D494-498. by Johannes Klein, Richard Munch, Ilona Biegler, Isam Haddad, Ida Retter, Dieter Jahn posted to comparative_genomics database gram-positive psortb_proportions streptococcus by nyyu on 2009-02-20 23:09:10 as along with 1 person druvus
	The bacterial species definition in the genomic era — Philosophical Transactions B [My Copy] Philosophical Transactions of the Royal Society Biological Sciences, Vol. 361 (2006), pp. 1929-1940. by Konstantinos T. Konstantinidis, Alban Ramette, James M. Tiedje posted to bacterial_genomics psortb_proportions species_definition by nyyu on 2009-02-20 23:06:52 as
	Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13950-13955. by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, et al.Claudio Donati, Duccio Medini, Naomi L. Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. DeBoy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Margarit, Jeremy D. Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William C. Nelson, Ramana Madupu, Lauren M. Brinkac, Robert J. Dodson, Mary J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle L. Gwinn, Liwei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser posted to bacterial_genomics gram-positive pangenome psortb_proportions by nyyu on 2009-02-20 23:01:56 as along with 4 people and 1 group sharpton azazello druvus AaronDarling iSEEM
	Estimating the size of the bacterial pan-genome. [My Copy] Trends in genetics : TIG, Vol. 25, No. 3. (23 March 2009), pp. 107-110. by Pascal Lapierre, J. Peter Gogarten posted to bacterial_evolution bacterial_genomics pangenome psortb_proportions by nyyu on 2009-02-20 22:22:34 as along with 4 people and 1 group treangen azazello skembel djkt iSEEM

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bacterial_genomics	19
psortb_proportions	18
comparative_genomics	12
psort	11
bacterial_evolution	10
pangenome	7
psortb_data	7
bioinformatics	5
gram-positive	5
archaea	4
genomics	4
gram-negative	4
surface_proteins	4
core_genome	3
database	3
network_biology	3
pathogenomics	3
protein_evolution	3
protein_function	3
secretome	3
t3ss	3
bacteria	2
escherichia_coli	2
gene_annotation	2
gram_positive_bacteria	2
multiple_alignment	2
network_analysis	2
phylogeography	2
population_biology	2
review	2
streptococcus	2
transcriptional_regulatory_network	2
ba	1
bact	1
bacterial_cell_wall	1
beta_barrel_prediction	1
biochemistry	1
diseases	1
epidemiology	1
gene_evolution	1
genome_arrangement	1
grem-negative	1
hiv	1
h_pylori	1
lipoproteins	1
membrane_protein_prediction	1
metabolism	1
motif_discovery	1
news	1
operons	1
outer_membrane	1
phylogenetics	1
prokaryotic_genomics	1
protein_properties	1
protein_structure	1
pseudomonas	1
psortdb	1
questions	1
rickettsia	1
secretion_system	1
secretory_pathway	1
species_definition	1
spirochetes	1
t3ss_effector_signal	1
t4ss	1
thesis	1
wall_anchor	1
yersinia	1

nyyu's library 38 articles Export

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