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oannes's tfbs [19 articles]

Recent papers added to oannes's library classified by the tag tfbs. You can also see everyone's tfbs.
  • Eukaryotic transcription factor binding sites - modeling and integrative search methods
    Bioinformatics (21 April 2008), btn198.
    by Sridhar Hannenhalli
    posted to tfbs by oannes on 2008-09-21 19:31:58 as ***** along with 9 people nklee hplatero maximilianh heliopais bootsy Ema sameetmehta jyuh chad_davis
  • The transcriptional regulatory code of eukaryotic cells - insights from genome-wide analysis of chromatin organization and transcription factor binding
    Current Opinion in Cell Biology, Vol. 18, No. 3. (June 2006), pp. 291-298.
    by Leah O Barrera, Bing Ren
    posted to chromatin tfbs by oannes on 2006-06-01 03:23:43 as ***** along with 4 people and 4 groups dchughes cmm lusk vietanh0 FAB-lab G4ID Regulomics_UCHSC Genetics-of-Gambling
  • Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1190-1197.
    by A Kel, T Konovalova, T Waleev, E Cheremushkin, O Kel-Margoulis, E Wingender
    posted to crm tfbs by oannes on 2006-06-01 03:18:40 as ***** along with 1 group Regulomics_UCHSC
  • Human Transcription Factors Contain a High Fraction of Intrinsically Disordered Regions Essential for Transcriptional Regulation.
    J Mol Biol (25 April 2006)
    by Yoshiaki Minezaki, Keiichi Homma, Akira R R Kinjo, Ken Nishikawa
    posted to structure tfbs by oannes on 2006-06-01 03:12:36 as **** along with 1 person and 1 group biomcgary Regulomics_UCHSC
  • BioMed Central | Abstract | 1471-2105-7-229 | Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
    posted to crm tfbs by oannes on 2006-05-26 21:47:51 as ** along with 1 group Regulomics_UCHSC
  • Transcription in four dimensions: nuclear receptor-directed initiation of gene expression.
    EMBO Rep, Vol. 7, No. 2. (February 2006), pp. 161-167.
    by R Métivier, G Reid, F Gannon
    posted to dynamic tfbs by oannes on 2006-05-25 17:26:35 as ** along with 1 group Regulomics_UCHSC
  • SUMO and ubiquitin in the nucleus: different functions, similar mechanisms?
    Genes Dev., Vol. 18, No. 17. (1 September 2004), pp. 2046-2059.
    by Grace Gill
    posted to sumo tfbs by oannes on 2006-05-25 17:12:41 as ** along with 2 people and 1 group imouthesmp cjeans Regulomics_UCHSC
  • Activation of TRAP/Mediator Subunit TRAP220/Med1 Is Regulated by Mitogen-Activated Protein Kinase-Dependent Phosphorylation
    Mol. Cell. Biol., Vol. 25, No. 24. (15 December 2005), pp. 10695-10710.
    by Pradeep K Pandey, TS Udayakumar, Xinjie Lin, Dipali Sharma, Paul S Shapiro, Joseph D Fondell
    posted to mediator pair tfbs by oannes on 2006-05-18 23:15:58 as ** along with 1 group Regulomics_UCHSC
  • Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.
    Nucleic Acids Res, Vol. 33, No. 2. (2005), pp. 546-558.
    by Z Liu, F Mao, JT Guo, B Yan, P Wang, Y Qu, Y Xu
    posted to structure tfbs by oannes on 2006-05-18 05:57:41 as ** along with 1 person and 1 group kaarsinogen Regulomics_UCHSC
  • Modeling gene expression control using Omes Law
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100055-E1-msb4100055-E3.
    by Harmen J Bussemaker
    posted to pair tfbs by oannes on 2006-05-09 21:11:26 as ** along with 2 people and 2 groups okarsligil nsamways Bioinformatics Regulomics_UCHSC
  • Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression.
    Genome Res (10 April 2006)
    by Mathieu Blanchette, Alain R R Bataille, Xiaoyu Chen, Christian Poitras, Josée Laganière, Céline Lefèbvre, Geneviève Deblois, Vincent Giguère, Vincent Ferretti, Dominique Bergeron, Benoit Coulombe, François Robert
    posted to tfbs by oannes on 2006-04-27 20:24:12 as ***** along with 1 group Regulomics_UCHSC
  • Protein-DNA binding specificity predictions with structural models.
    Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5781-5798.
    by AV Morozov, JJ Havranek, D Baker, ED Siggia
    posted to tfbs by oannes on 2006-04-27 20:20:00 as ** along with 1 group Regulomics_UCHSC
  • Annotating significant pairs of transcription factor binding sites in regulatory DNA.
    In Silico Biol, Vol. 4, No. 4. (2004), pp. 479-487.
    by K Rateitschak, T Müller, M Vingron
    posted to pair tfbs by oannes on 2006-04-27 20:17:24 as ** along with 1 group Regulomics_UCHSC
  • Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.
    Nucleic Acids Res, Vol. 31, No. 20. (15 October 2003), pp. 6016-6026.
    by VJ Makeev, AP Lifanov, AG Nazina, DA Papatsenko
    posted to distance pair tfbs by oannes on 2006-04-27 20:16:27 as read along with 2 people and 2 groups dpollard lusk EisenLab Regulomics_UCHSC
  • Predicting transcription factor synergism.
    Nucleic Acids Res, Vol. 30, No. 19. (1 October 2002), pp. 4278-4284.
    by S Hannenhalli, S Levy
    posted to pair tfbs by oannes on 2006-04-27 20:13:23 as read along with 1 group Regulomics_UCHSC
  • Annotating significant pairs of transcription factor binding sites in regulatory DNA
    posted to pair tfbs by oannes on 2006-04-27 20:10:10 as read along with 1 group Regulomics_UCHSC
  • Genome-wide prediction and analysis of function-specific transcription factor binding sites
    posted to pair tfbs by oannes on 2006-04-27 20:08:38 as read along with 1 group Regulomics_UCHSC
  • Schema for TFBS Conserved - HMR Conserved Transcription Factor Binding Sites
    posted to tfbs by oannes on 2006-04-24 18:44:07 as read along with 1 group Regulomics_UCHSC
  • Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.
    Nucleic Acids Res, Vol. 34, No. 3. (2006), pp. 917-927.
    by X Yu, J Lin, T Masuda, N Esumi, DJ Zack, J Qian
    posted to distance pair tfbs by oannes on 2006-04-21 21:53:08 as ***** along with 3 people and 1 group balajis malcook lusk Regulomics_UCHSC
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