oelemento's watchlist [more than 800 articles] Export

Recent papers matching oelemento's watchlist criteria

	Statistical comparison framework and visualization scheme for ranking-based algorithms in high-throughput genome-wide studies. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 4. (April 2009), pp. 565-577. by Waibhav D. Tembe, John V. Pearson, Nils Homer, James Lowey, Edward Suh, David W. Craig posted to ranked_lists gene_set_analysis by jfr on 2009-11-09 13:42:57 as along with 1 person guhjy
	Target discovery from data mining approaches. [My Copy] Drug discovery today, Vol. 14, No. 3-4. (7 February 2009), pp. 147-154. by Yongliang Yang, S. James Adelstein, Amin I. Kassis posted to target_discovery review by jfr on 2009-11-09 13:38:08 as along with 8 people and 1 group agomez eesruiz tonamswish mitko nicklynch sschurer guhjy zimbo1 ImagCom - Biomedical Text Computing
	Breast Cancer Subtypes and Response to Docetaxel in Node-Positive Breast Cancer: Use of an Immunohistochemical Definition in the BCIRG 001 Trial [My Copy] J Clin Oncol (9 February 2009), JCO.2008.18.1024. by Judith Hugh, John Hanson, Maggie C. Cheang, et al.Torsten O. Nielsen, Charles M. Perou, Charles Dumontet, John Reed, Maryla Krajewska, Isabelle Treilleux, Matthieu Rupin, Emmanuelle Magherini, John Mackey, Miguel Martin, Charles Vogel posted to trial therapy subtypes breast_cancer by jfr on 2009-11-09 13:36:25 as
	Integrated analysis of breast cancer cell lines reveals unique signaling pathways [My Copy] Genome Biology, Vol. 10 (25 March 2009), R31. by Laura, Paul T. Spellman posted to subtypes network cell_line breast_cancer by jfr on 2009-11-09 13:31:09 as along with 3 people and 1 group thegoose shikin Stew Bioinformatics - CRUK
	Adaptable gene-specific dye bias correction for two-channel DNA microarrays. [My Copy] Molecular systems biology, Vol. 5 (28 April 2009) by Thanasis Margaritis, Philip Lijnzaad, Dik van Leenen, et al.Diane Bouwmeester, Patrick Kemmeren, Sander R. van Hooff, Frank C. Holstege posted to two-color microarray_analysis low_level dye_bias bioconductor by jfr on 2009-11-09 11:39:03 as along with 1 person reyez
	Targeted proteomics for validation of biomarkers in clinical samples [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 2. (1 March 2009), pp. 126-135. by Xiaoying Ye, Josip Blonder, Timothy D. Veenstra posted to review proteomics ffpe biomarkers by jfr on 2009-11-09 10:33:29 as along with 1 person guhjy
	Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression [My Copy] Nature Biotechnology, Vol. 27, No. 5. (26 April 2009), pp. 472-477. by Jinkuk Kim, David P. Bartel posted to snp mirna_regulation mirna by jfr on 2009-11-08 23:34:07 as along with 7 people and 1 group guhjy fenghezi giovanni jbhiatt daforerog samgj valeriehilgers microRNA
	The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression [My Copy] Genome Research, Vol. 19, No. 6. (June 2009), pp. 987-993. by Alan M. Pittman, Silvia Naranjo, Emily Webb, et al.Peter Broderick, Esther H. Lips, Tom van Wezel, Hans Morreau, Kate Sullivan, Sarah Fielding, Philip Twiss, Jayaram Vijayakrishnan, Fernando Casares, Mobshra Qureshi, José L. Gómez-Skarmeta, Richard S. Houlston posted to snp smad7 colon_cancer by jfr on 2009-11-08 23:32:50 as along with 1 person neils
	Ten Simple Rules To Combine Teaching and Research [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000358. by Quentin Vicens, Philip E. Bourne posted to plos_rules by jfr on 2009-11-08 23:21:00 as along with 25 people and 3 groups rdiaz CulCog mevadg nanonan angelicabtto daforerog dipenps guano NIlz coela apaydin jago abellogin yangjustinc silberbauer marekrud lambert72 edws allysonlister dswan dullhunk barry ulrichs mariopinedakrch sobolevnrm Tips on research McCammon baker-group
	Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. [My Copy] PloS one, Vol. 4, No. 5. (2009) by Michal R. Schweiger, Martin Kerick, Bernd Timmermann, et al.Marcus W. Albrecht, Tatjana Borodina, Dmitri Parkhomchuk, Kurt Zatloukal, Hans Lehrach posted to technology mutation ffpe deep_sequencing copy-number by jfr on 2009-11-08 23:11:35 as along with 1 person reyez
	American Society of Clinical Oncology provisional clinical opinion: testing for KRAS gene mutations in patients with metastatic colorectal carcinoma to predict response to anti-epidermal growth factor receptor monoclonal antibody therapy. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 12. (20 April 2009), pp. 2091-2096. by Carmen J. Allegra, J. Milburn Jessup, Mark R. Somerfield, et al.Stanley R. Hamilton, Elizabeth H. Hammond, Daniel F. Hayes, Pamela K. McAllister, Roscoe F. Morton, Richard L. Schilsky posted to therapy mutation kras egfr colon_cancer by jfr on 2009-11-08 23:07:40 as along with 1 person brainsman2000
	Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7131-7136. by Michal Sheffer, Manny D. Bacolod, Or Zuk, et al.Sarah F. Giardina, Hanna Pincas, Francis Barany, Philip B. Paty, William L. Gerald, Daniel A. Notterman, Eytan Domany posted to survival copy-number colon_cancer by jfr on 2009-11-08 23:03:53 as along with 2 people kdpreter rdiaz
	Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 91-104. by Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi, Eytan Domany posted to subtypes copy-number by jfr on 2009-11-08 23:01:41 as
	Prediction of guide strand of microRNAs from its sequence and secondary structure [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (09 April 2009), 105. by Firoz Ahmed, Hifzur Ansari, Gajendra Raghava posted to mirna by jfr on 2009-11-08 22:58:14 as along with 3 people and 1 group homonecloco raventhorn86 samgj microRNA
	Properties of balanced permutations. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 4. (April 2009), pp. 625-638. by L. K. Southworth, S. K. Kim, A. B. Owen posted to statistics sampling permutations by jfr on 2009-11-08 22:54:44 as along with 1 person pbellec
	Recent advances in systemic therapy. Advances in adjuvant systemic chemotherapy of early breast cancer [My Copy] Breast Cancer Research, Vol. 11, No. 2. (19 March 2009), 204. by Sara L. Tarruella, Miguel Martin posted to review chemotherapy breast_cancer by jfr on 2009-11-08 22:49:51 as
	Recent advances in systemic therapy. New diagnostics and biological predictors of outcome in early breast cancer [My Copy] Breast Cancer Research, Vol. 11, No. 2. (03 April 2009), 205. by Catherine Oakman, Silvia Bessi, Elena Zafarana, Francesca Galardi, Laura Biganzoli, Angelo Di Leo posted to review gene_expression breast_cancer biomarkers by jfr on 2009-11-08 22:48:04 as
	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	A dynamic network approach for the study of human phenotypes [My Copy] (22 Sep 2009) by Cesar A. Hidalgo, Nicholas Blumm, Albert-Laszlo Barabasi, Nicholas Christakis posted to network disease by jfr on 2009-11-08 22:42:09 as along with 3 people pak apocapoc marinari
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to genomics feature_selection by jfr on 2009-11-08 22:39:28 as along with 12 people and 2 groups CorinYeats dayjm taylor73 Thaverkamp hpaces sriesenfeld APRegier dswan druvus djkt skembel idoerg Orengo Group Journal Picks iSEEM
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted to protein_interaction network by jfr on 2009-11-08 22:37:00 as along with 18 people and 1 group freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine baker-group
	Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer [My Copy] J Clin Oncol, Vol. 27, No. 19. (1 July 2009), pp. 3185-3191. by Cornelia Liedtke, Christos Hatzis, William F. Symmans, et al.Christine Desmedt, Benjamin Haibe-Kains, Vicente Valero, Henry Kuerer, Gabriel N. Hortobagyi, Martine Piccart-Gebhart, Christos Sotiriou, Lajos Pusztai posted to gene_expression chemotherapy breast_cancer by jfr on 2009-11-08 22:33:09 as
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to software read_mapping by jfr on 2009-11-08 22:30:38 as along with 30 people and 2 groups walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	Molecular classification of solid tumours: towards pathway-driven therapeutics. [My Copy] British journal of cancer, Vol. 100, No. 10. (19 May 2009), pp. 1517-1522. by C. Swanton, C. Caldas posted to subtypes review personalized_medicine breast_cancer by jfr on 2009-11-08 22:22:43 as along with 5 people rdiaz tonamswish guhjy xtizon giovenko
	Adventures in semantic publishing: exemplar semantic enhancements of a research article. [My Copy] PLoS computational biology, Vol. 5, No. 4. (17 April 2009), e1000361. by D. Shotton, K. Portwin, G. Klyne, A. Miles posted to semantic_web reproducible_research by jfr on 2009-11-08 22:18:49 as along with 33 people and 4 groups applebyb artaban421 Zephyrus antonkratz RafG daforerog Scis0000002 ddunbar pajoma pick600 guhjy kevinemamy neils dswan Publicase vagoskar ThomasAabo gaoxiaobiye silberbauer perbohner rs druvus billga williamgunn martingerner cisevol Effie fgibson mikel_egana allysonlister dullhunk pauldobson Cortel Roswell Cancer Crosstalk musil BergmanLab NaCTeM
	Small RNA: A Large Contributor to Carcinogenesis? [My Copy] Journal of Gastrointestinal Surgery, Vol. 13, No. 7. (1 July 2009), pp. 1379-1388. by Imran Bhatti, Andrew Lee, Jonathan Lund, Michael Larvin posted to review mirna by jfr on 2009-11-08 22:14:40 as along with 1 person and 1 group guhjy microRNA
	dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 108. by Manoj Hariharan, Vinod Scaria, Samir Brahmachari posted to snp mirna_regulation mirna database by jfr on 2009-11-08 22:08:30 as along with 6 people and 1 group songpku guhjy pengchy daforerog lwaldron ealloza microRNA
	Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes [My Copy] Molecular Cancer Research, Vol. 7, No. 4. (April 2009), pp. 511-522. by Xiaolan Hu, Howard M. Stern, Lin Ge, et al.Carol O'Brien, Lauren Haydu, Cynthia D. Honchell, Peter M. Haverty, Brock A. Peters, Thomas D. Wu, Lukas C. Amler, John Chant, David Stokoe, Mark R. Lackner, Guy Cavet posted to subtypes copy-number breast_cancer by jfr on 2009-11-08 22:06:10 as along with 2 people rdiaz Zephyrus
	Elucidation of functional consequences of signalling pathway interactions [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 370. by Adaoha Ihekwaba, Phuong Nguyen, Corrado Priami posted to signaling pathway modelling by renatomilani on 2009-11-07 18:00:01 as along with 1 person colmryan
	Sepsis: the dark side of histones [My Copy] Nature Medicine, Vol. 15, No. 11. (01 November 2009), pp. 1245-1246. by Catherine Chaput, Arturo Zychlinsky posted to histone by renatomilani on 2009-11-07 17:57:13 as
	Mission Improbable: A Concise and Precise Definition of P-Value [My Copy] SCIENCENOW, Vol. 2009, No. 1030. (30 October 2009), 1. by Jon Cohen posted to statistics metascience by renatomilani on 2009-11-07 17:46:50 as
	Using the ratio of means as the effect size measure in combining results of microarray experiments [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 106. by Pingzhao Hu, Celia Greenwood, Joseph Beyene posted to statistics microarray methods by renatomilani on 2009-11-07 17:06:14 as
	Proteomics strategy for quantitative protein interaction profiling in cell extracts. [My Copy] Nature methods, Vol. 6, No. 10. (13 October 2009), pp. 741-744. by Kirti Sharma, Christoph Weber, Michaela Bairlein, et al.Zoltán Greff, György Kéri, Jürgen Cox, Jesper V. Olsen, Henrik Daub posted to proteomics methods interaction by renatomilani on 2009-11-07 00:37:06 as along with 1 person brianb
	SimBoolNet - A Cytoscape Plugin for Dynamic Simulation of Signaling Networks [My Copy] Bioinformatics (3 November 2009), btp617. by Jie Zheng, David Zhang, Pawel F. Przytycki, Rafal Zielinski, Jacek Capala, Teresa M. Przytycka posted to tool signaling networks cytoscape bioinformatics by renatomilani on 2009-11-06 02:02:43 as
	Selecting optimal second-line tyrosine kinase inhibitor therapy for chronic myeloid leukemia patients after imatinib failure - does the BCR-ABL mutation status really matter? [My Copy] Blood (30 October 2009), blood-2009-08-215939. by Susan Branford, Junia V. Melo, Timothy P. Hughes posted to leukemia inhibitor abl by renatomilani on 2009-11-06 02:02:06 as
	Dysregulation of bone remodelling by imatinib mesylate [My Copy] Blood (4 November 2009), blood-2009-08-237404. by Kate Vandyke, Stephen Fitter, Andrea L. Dewar, Timothy P. Hughes, Andrew C. W. Zannettino posted to leukemia chemotherapy bone by renatomilani on 2009-11-06 02:01:45 as
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to metascience f1000 by renatomilani on 2009-11-05 22:55:01 as along with 103 people and 5 groups applebyb dbikard toszko mthomure timflutre cyounkin marsl0am jmzhuo dmorti ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol michaelbarton dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo roys benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	Cancer: A tumour gene's fatal flaws [My Copy] Nature, Vol. 462, No. 7269. (04 November 2009), pp. 44-45. by Julian Downward posted to ras nf-kb cancer by renatomilani on 2009-11-05 21:02:08 as along with 1 person tonamswish
	Human RAP1 inhibits non-homologous end joining at telomeres [My Copy] The EMBO Journal, Vol. 28, No. 21. (17 September 2009), pp. 3390-3399. by Jay Sarthy, Nancy S. Bae, Jonathan Scrafford, Peter Baumann posted to telomere structure dna by renatomilani on 2009-11-05 20:21:19 as
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted to review clustering by jfr on 2009-11-04 11:17:54 as along with 14 people and 2 groups mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff sobolevnrm barry svozil baker-group Bioinformatics
	Potential Bias in GO::TermFinder [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 289-294. by Robert M. Flight, Peter D. Wentzell posted to gene_set_analysis gene_ontology by jfr on 2009-11-04 11:15:47 as along with 2 people le-gal shwu
	Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 259-277. by William B. Langdon, Graham J. G. Upton, Andrew P. Harrison posted to low_level affy by jfr on 2009-11-04 11:09:53 as along with 2 people bertelsen zufar
	Redefining MicroRNA Targets [My Copy] Vol. 19, No. 10. (26 May 2009), pp. 870-873. by Hervé Seitz posted to mirna_target mirna comment by jfr on 2009-11-04 10:26:58 as along with 1 person and 1 group hrogers microRNA
	Metastatic gene signatures and emerging novel prognostic tests in the management of early stage breast cancer. [My Copy] Clinical & experimental metastasis (18 April 2009) by Attila Tordai, Cornelia Liedtke, Lajos Pusztai posted to review prognosis gene_expression classification breast_cancer by jfr on 2009-11-04 10:24:26 as
	Evidence for Antisense Transcription Associated with MicroRNA Target mRNAs in Arabidopsis [My Copy] PLoS Genet, Vol. 5, No. 4. (17 April 2009), e1000457. by Qing-Jun Luo, Manoj P. Samanta, Fatih Köksal, et al.Jaroslav Janda, David W. Galbraith, Casey R. Richardson, Fangqian Ou-Yang, Christopher D. Rock posted to mirna_target mirna antisense by jfr on 2009-11-04 10:19:32 as along with 2 people and 1 group gdb pengchy microRNA
	An aPKC-Exocyst Complex Controls Paxillin Phosphorylation and Migration through Localised JNK1 Activation [My Copy] PLoS Biol, Vol. 7, No. 11. (3 November 2009), e1000235. by Carine Rosse, Etienne Formstecher, Katrina Boeckeler, et al.Yingming Zhao, Joachim Kremerskothen, Michael D. White, Jacques H. Camonis, Peter J. Parker posted to pkc jnk adhesion by renatomilani on 2009-11-03 20:43:45 as along with 1 person hryk
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1165-1172. by Bracken M. King, Bruce Tidor posted to dimension_reduction clustering by jfr on 2009-11-03 17:22:55 as along with 1 person aheilbut
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to pathway_analysis gene_set_analysis feature_selection by jfr on 2009-11-03 17:20:53 as along with 4 people praisan rdiaz ipark-kaist guhjy
	Smoothing waves in array CGH tumor profiles [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1099-1104. by Mark A. van de Wiel, Rebecca Brosens, Paul H. C. Eilers, et al.Candy Kumps, Gerrit A. Meijer, Bjorn Menten, Erik Sistermans, Frank Speleman, Marieke E. Timmerman, Bauke Ylstra posted to software segmentation array-cgh by jfr on 2009-11-03 17:17:48 as along with 4 people nuin lwaldron pkonings rdiaz

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cancer	25
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regulatory_elements	11
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tyrosine	1
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