ojabado's library 18 articles Export

	On the cruelty of really teaching computing science [My Copy] by Edsger Dijkstra posted to computer science by ojabado on 2008-12-03 22:37:31 as
	The 20 years of PROSITE [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D245-249. by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Beatrice A. Cuche, Edouard de Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist posted to hmm homology by ojabado on 2008-12-01 15:59:21 as along with 8 people and 1 group gwallau nlapalu Zoltan_Barczikay fbristow reyez dullhunk hplatero Evangelia LabDros
	An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System [My Copy] Parallel and Distributed Systems, IEEE Transactions on In Parallel and Distributed Systems, IEEE Transactions on, Vol. 19, No. 1. (2008), pp. 15-23. by K. Jiang, O. Thorsen, A. Peters, B. Smith, C. P. Sosa posted to hmm homology parallel search by ojabado on 2008-11-18 13:18:01 as
	Designing patterns for profile HMM search [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e36-e43. by Sun, Yanni, Buhler, Jeremy posted to complexity computational hmm profile search by ojabado on 2008-11-18 12:34:33 as
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted to expression gene microarray sequencing by ojabado on 2008-11-18 12:00:41 as along with 25 people manduca hzoltan GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk caseybrown abizar natstreet druvus rschulz pengchy
	Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface [My Copy] Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), e132. by Lena Poulsen, Martin J. Soe, Detlef Snakenborg, Lisbeth B. Moller, Martin Dufva posted to hybridization microarray model surface by ojabado on 2008-11-18 11:58:43 as
	A competitive hybridization model predicts probe signal intensity on high density DNA microarrays [My Copy] Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6585-6591. by Shuzhao Li, Alex Pozhitkov, Marius Brouwer posted to linear microarray models probe by ojabado on 2008-11-18 11:56:20 as along with 3 people bertelsen jfr rdiaz
	Correcting base-assignment errors in repeat regions of shotgun assembly. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 4, No. 1. (r 2007), pp. 54-64. by Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang posted to assembly euler sequencing tour by ojabado on 2008-11-14 20:28:34 as along with 2 people n00c dakelley
	Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 4. (2007), pp. 561-571. by Srinath Sridhar, Kedar Dhamdhere, Guy Blelloch, Eran Halperin, R. Ravi, Russell Schwartz posted to google by ojabado on 2008-11-13 22:26:24 as
	Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network [My Copy] Nature Biotechnology, Vol. 26, No. 11. (26 October 2008), pp. 1251-1259. by Gal Chechik, Eugene Oh, Oliver Rando, Jonathan Weissman, Aviv Regev, Daphne Koller posted to google by ojabado on 2008-11-13 22:21:31 as along with 8 people ptrobajo jbhiatt balabu behindtherabbit jjray renatomilani megraw neils
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara E Catenazzi, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong D. Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee Ling Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana Chiva Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie Vandevondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to dataset genome human solexa by ojabado on 2008-11-06 19:19:15 as along with 29 people and 1 group hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago caseybrown pkonings djkt SIMR bioinformatics
	GOSLING: a rule-based protein annotator using BLAST and GO. [My Copy] Bioinformatics (Oxford, England) (16 September 2008) by Craig E E. Jones, Julian Schwerdt, Tessa Arwen A. Bretag, Ute Baumann, Alfred L L. Brown posted to annotation metagenomics pipelines by ojabado on 2008-11-06 17:35:16 as along with 2 people mpitman guhjy
	Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology [My Copy] Nucl. Acids Res., Vol. 36, No. 19. (1 November 2008), e122. by Richard Cronn, Aaron Liston, Matthew Parks, David S. Gernandt, Rongkun Shen, Todd Mockler posted to dataset metagenomics sequencing solexa by ojabado on 2008-11-03 21:36:46 as along with 7 people usagi-kirin reyez mlog pdexheimer abizar brant aconesa
	Funybase: a Fungal phylogenomic database [My Copy] BMC Bioinformatics, Vol. 9 (27 October 2008), 456. by Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, et al.Annie Gendrault, Tatiana Giraud, Elisabeth Fournier, Manuela Lopez-Villavicencio, Angelique Gautier, Marc-Henri Lebrun, Helene Chiapello posted to alignment fungus phylogeny protein by ojabado on 2008-10-30 16:14:48 as along with 6 people and 1 group GustavoLacerda fungal nlapalu druvus stajich nklee Mycology
	High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000139. by Anjana Srivatsan, Yi Han, Jianlan Peng, et al.Ashley K. Tehranchi, Richard Gibbs, Jue D. Wang, Rui Chen posted to b dataset high sequencing solexa subtilis throughput by ojabado on 2008-10-29 20:44:56 as along with 7 people azazello usagi-kirin druvus lewista abizar reyez caseybrown
	The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (19 September 2008), 386. by F. Meyer, D. Paarmann, M. D'Souza, et al.R. Olson, E. M. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, J. Wilkening, R. A. Edwards posted to metagenomics sequencing by ojabado on 2008-10-22 21:06:34 as along with 9 people and 1 group CorinYeats taylor73 idoerg Thaverkamp druvus guhjy operon nuin neils Orengo Group Journal Picks
	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [My Copy] Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120. by Zongzhi Liu, Todd Z. Desantis, Gary L. Andersen, Rob Knight posted to 16s phylogeny ribosomal rrna sequencing by ojabado on 2008-10-22 17:56:17 as along with 5 people and 3 groups esyoun skembel sconlan vaulot jlgreen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted to ribosomal rna rrna sequencing by ojabado on 2008-10-22 17:40:01 as along with 5 people and 3 groups vaulot jlgreen Thaverkamp treangen nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM

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sequencing	7
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google	2
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phylogeny	2
ribosomal	2
rrna	2
search	2
16s	1
alignment	1
annotation	1
assembly	1
b	1
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