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olympos's watchlist [999 articles]

Recent papers matching olympos's watchlist criteria
  • Biological pathway kinetic rate constants are scale-invariant
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 741-743.
    by Scott Grandison, Richard J Morris
    posted by 2 people Ema bertelsen
  • A machine-learning approach to combined evidence validation of genome assemblies
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750.
    by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G Gilbert, John K Colbourne
    posted by 5 people GustavoLacerda Neeperando tharris ttuechler bertelsen
  • A segmental maximum a posteriori approach to genome-wide copy number profiling
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 751-758.
    by Andersson, Robin, Bruder, EG Carl, Piotrowski, Arkadiusz, Menzel, Uwe, Nord, Helena, Sandgren, Johanna, Hvidsten, R Torgeir, Diaz de Stahl, Teresita, Dumanski, P Jan, Komorowski, Jan
  • Estimation and assessment of raw copy numbers at the single locus level
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 759-767.
    by H Bengtsson, R Irizarry, B Carvalho, TP Speed
    posted by 2 people djkt Ema
  • ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 768-774.
    by Guillem Rigaill, Philippe Hupe, Anna Almeida, Philippe La Rosa, Jean-Philippe Meyniel, Charles Decraene, Emmanuel Barillot
    posted by 3 people alako djkt jfr
  • Prediction of zinc-binding sites in proteins from sequence
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 775-782.
    by Shu, Nanjiang, Zhou, Tuping, Hovmaller, Sven
  • SVM-HUSTLEaan iterative semi-supervised machine learning approach for pairwise protein remote homology detection
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 783-790.
    by Shah, R Anuj, Oehmen, S Christopher, Webb-Robertson, Bobbie-Jo
    posted by 1 person ptrobajo
  • Compressed indexing and local alignment of DNA
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797.
    by Lam, , Sung, , Tam, , Wong, , Yiu,
    posted by 3 people antonkratz cap1 lp2
  • ConFuncafunctional annotation in the twilight zone
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 798-806.
    by Wass, N Mark, Sternberg, JE Michael
  • De novo identification of highly diverged protein repeats by probabilistic consistency
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 807-814.
    by Biegert, , Sading,
    posted by 1 person granujilla
  • Prediction of neuropeptide cleavage sites in insects
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 815-825.
    by Southey, R Bruce, Sweedler, V Jonathan, Rodriguez-Zas, L Sandra
  • Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 826-832.
    by Birin, Hadas, Gal-Or, Zohar, Elias, Isaac, Tuller, Tamir
  • Bayesian Ranking of Biochemical System Models.
    Bioinformatics (5 December 2007)
    by Vladislav Vyshemirsky, Mark A A Girolami
    posted by 8 people Jarman Lab ggallone jyuh bootsy lenov keithvass sobolevnrm baker-group
  • Flexible Informatics for Linking Experimental Data to Mathemati-cal Models via DataRail.
    Bioinformatics (24 January 2008)
    by Julio Saez-Rodriguez, Arthur Goldsipe, Jeremy Muhlich, Leonidas G G Alexopoulos, Bjorn Millard, Douglas A A Lauffenburger, Peter K K Sorger
    posted by 5 people SorgerLab jaycopeland jyuh cdppublications GeeSharpMinor
  • Complexity reduction of biochemical rate expressions
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 848-854.
    by Schmidt, Henning, Madsen, F Mads, A Dan, Sune, Cedersund, Gunnar
    posted by 1 person lptolik
  • Effect of spatial distribution of T-Cells and HIV load on HIV progression
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 855-860.
    by Graziano, M Frank, Kettoola, Y Samira, Munshower, M Judy, Stapleton, T Jack, Towfic, J George
  • GenomeVx: simple web-based creation of editable circular chromosome maps
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 861-862.
    by Conant, C Gavin, Wolfe, H Kenneth
  • Prophinder: a computational tool for prophage prediction in prokaryotic genomes
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 863-865.
    by Lima-Mendez, Gipsi, Van Helden, Jacques, Toussaint, Ariane, Leplae, Raphaal
    posted by 1 person vwchan
  • TaxonGap: a visualisation tool for intra- and inter-species variation among individual biomarkers.
    Bioinformatics (28 January 2008)
    by Slabbinck B, Dawyndt P, Martens M, De Vos V P, De Baets B B
    posted by 3 people jyuh Bevan_Weir GeeSharpMinor
  • Interactive visualization software for exploring phylogenetic trees and clades
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 868-869.
    by Derthick, Mark
  • A discrete view on fold space
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 870-871.
    by Sippl, J Manfred, Suhrer, J Stefan, Gruber, Markus, Wiederstein, Markus
  • On distance and similarity in fold space
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 872-873.
    by Manfred J Sippl
    posted by 1 person Ema
  • Model-based Bayesian clustering (MBBC)
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 874-875.
    by Yongsung Joo, James G Booth, Younghwan Namkoong, George Casella
    posted by 1 person jyuh
  • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    Bioinformatics (16 November 2007), btm553.
    by Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot
    posted by 6 people jyuh jfr dullhunk grahamc sgoetz idonaldson
  • Using flowViz to visualize flow cytometry data
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 878-879.
    by Sarkar, , Le Meur, , Gentleman,
  • LibSBML: An API Library for SBML
    Bioinformatics (5 February 2008), btn051.
    by Benjamin J Bornstein, Sarah M Keating, Akiya Jouraku, Michael Hucka
    posted by 6 people jyuh chad_davis dullhunk lenov maralena pmendes
  • OutlierD: An R package for outlier detection using quantile regression on mass spectrometry data.
    Bioinformatics (10 January 2008)
    by Hyungjun Cho, Yang-Jin J Kim, Hee Jung J Jung, Sang-Won W Lee, Jae Won W Lee
    posted by 2 people jyuh ptrobajo
  • ONTO-PERL: An API supporting the development and analysis of bio-ontologies.
    Bioinformatics (1 February 2008)
    by E Antezana, M Egaña, B De Baets, M Kuiper, V Mironov
    posted by 6 people dansullivanblk jyuh dullhunk RockHI sobolevnrm baker-group
  • Evigan: A Hidden Variable Model for Integrating Gene Evidence for Eukaryotic Gene Prediction.
    Bioinformatics (10 January 2008)
    by Qian Liu, Aaron J J Mackey, David S S Roos, Fernando C N C Pereira
    posted by 7 people druvus stajich EisenLab mingzhi Berkeley Mycology gongScience alexl
  • Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 606-612.
    by Sakarya, Onur, Kosik, S Kenneth, Oakley, H Todd
  • Prediction of protein functional residues from sequence by probability density estimation
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 613-620.
    by Fischer, , Mayer, , Sading,
  • Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 621-628.
    by Igor V Tetko, Igor V Rodchenkov, Mathias C Walter, Thomas Rattei, Hans-Werner Mewes
    posted by 5 people druvus jyuh nedwards gongScience shung
  • fdrMotif: Identifying cis-elements by an EM Algorithm Coupled with False Discovery Rate Control.
    Bioinformatics (22 February 2008)
    by Leping Li, Robert L L Bass, Yu Liang
    posted by 4 people maximilianh idonaldson csdhwang isimpson
  • Using native and syntenically mapped cDNA alignments to improve de novo gene finding
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 637-644.
    by Stanke, Mario, Diekhans, Mark, Baertsch, Robert, Haussler, David
  • Structural search and retrieval using a tableau representation of protein folding patterns
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 645-651.
    by Konagurthu, S Arun, Stuckey, J Peter, Lesk, M Arthur
  • DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological proteinaprotein interactions
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 652-658.
    by Bernauer, Julie, Bahadur, Ranjit Prasad, Rodier, Francis, Janin, Joal, Poupon, Anne
  • Observation of multiple folding pathways of I-hairpin trpzip2 from independent continuous folding trajectories
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 659-665.
    by Chen, Changjun, Xiao, Yi
  • Genome-wide co-expression based prediction of differential expressions.
    Bioinformatics (15 November 2007)
    by Yinglei Lai
    posted by 6 people jfr jyuh shigepong aubinhon Integrative_biology_behavior gongScience
  • Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 674-681.
    by Khatun, Jainab, Hamlett, Eric, Giddings, C Morgan
  • Using repeated measurements to validate hierarchical gene clusters
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 682-688.
    by Brahalin, Laurent, Gascuel, Olivier, Martin, Olivier
  • An assessment of the uses of homologous interactions
    Bioinformatics (27 November 2007), btm576.
    by Ramazan Saeed, Charlotte Deane
    posted by 9 people winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
  • Interpool: interpreting smart-pooling results
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 696-703.
    by Nicolas Thierry-Mieg, Gilles Bailly
    posted by 3 people jyuh rmk laughcry
  • A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 704-710.
    by Kremling, , Bettenbrock, , Gilles,
  • GENESIS: genome evolution scenarios
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 711-712.
    by Gog, Simon, Bader, Martin, Ohlebusch, Enno
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted by 11 people pengchy umit jyuh ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
  • Phyutility: a phyloinformatics tool for trees, alignments, and molecular data
    Bioinformatics (28 January 2008), btm619.
    by Smith, Dunn
    posted by 2 people jyuh renatomilani
  • TreeMos: a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 717-718.
    by Moore, , Allaby,
  • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R
    Bioinformatics (16 November 2007), btm563.
    by Peter Langfelder, Bin Zhang, Steve Horvath
    posted by 1 person kengg
  • QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 721-723.
    by Jian Yang, Chengcheng Hu, Han Hu, Rongdong Yu, Zhen Xia, Xiuzi Ye, Jun Zhu
    posted by 1 person jyuh
  • Jenti: an efficient tool for mining complex inbred genealogies
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 724-726.
    by Falchi, Mario, Fuchsberger, Christian
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