Prediction of RNA secondary structure by free energy minimization. Export

@article{citeulike:1890800, abstract = {RNA secondary structure is often predicted from sequence by free energy minimization. Over the past two years, advances have been made in the estimation of folding free energy change, the mapping of secondary structure and the implementation of computer programs for structure prediction. The trends in computer program development are: efficient use of experimental mapping of structures to constrain structure prediction; use of statistical mechanics to improve the fidelity of structure prediction; inclusion of pseudoknots in secondary structure prediction; and use of two or more homologous sequences to find a common structure.}, address = {Department of Biochemistry \& Biophysics, University of Rochester Medical Center, 601 Elmwood Avenue, Box 712, Rochester, NY 14642, USA.}, author = {Mathews, D. H. and Turner, D. H.}, citeulike-article-id = {1890800}, citeulike-linkout-0 = {http://dx.doi.org/10.1016/j.sbi.2006.05.010}, citeulike-linkout-1 = {http://linkinghub.elsevier.com/retrieve/pii/S0959440X06000819}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/16713706}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=16713706}, citeulike-linkout-4 = {http://www.sciencedirect.com/science/article/B6VS6-4K0FFT1-5/2/4921cc1b632f77788010086c33786308}, doi = {10.1016/j.sbi.2006.05.010}, issn = {0959-440X}, journal = {Curr Opin Struct Biol}, keywords = {rna\_sec\_structure, rnai}, month = {June}, number = {3}, pages = {270--278}, posted-at = {2007-11-09 18:46:18}, priority = {0}, title = {Prediction of RNA secondary structure by free energy minimization.}, url = {http://dx.doi.org/10.1016/j.sbi.2006.05.010}, volume = {16}, year = {2006} }

TY - JOUR ID - citeulike:1890800 L3 - citeulike-article-id:1890800 N2 - RNA secondary structure is often predicted from sequence by free energy minimization. Over the past two years, advances have been made in the estimation of folding free energy change, the mapping of secondary structure and the implementation of computer programs for structure prediction. The trends in computer program development are: efficient use of experimental mapping of structures to constrain structure prediction; use of statistical mechanics to improve the fidelity of structure prediction; inclusion of pseudoknots in secondary structure prediction; and use of two or more homologous sequences to find a common structure. IS - 3 JF - Curr Opin Struct Biol SN - 0959-440X AD - Department of Biochemistry & Biophysics, University of Rochester Medical Center, 601 Elmwood Avenue, Box 712, Rochester, NY 14642, USA. EP - 278 TI - Prediction of RNA secondary structure by free energy minimization. VL - 16 SP - 270 KW - rna_sec_structure KW - rnai AU - Mathews, DH AU - Turner, DH PY - 2006/06// UR - http://dx.doi.org/10.1016/j.sbi.2006.05.010 ER -