onufriev's explicit_solvation [7 articles] Export

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	Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 4. (19 February 2002), pp. 1763-1768. by Samir K. Pal, Jorge Peon, Ahmed H. Zewail posted to dielectric_in_biopolymers explicit_solvation water_in_biopolymers water_models by onufriev on 2008-09-04 01:01:32 as
	A reappraisal of what we have learnt during three decades of computer simulations on water [My Copy] Journal of Molecular Liquids In Molecular Liquids. Water at the New Millenium, Vol. 101, No. 1-3. (November 2002), pp. 219-260. by Bertrand Guillot posted to explicit_solvation by onufriev on 2008-08-23 21:38:01 as along with 5 people pavanghatty flbarroso loison ruvido softsimu
	A Test on Peptide Stability of AMBER Force Fields with Implicit Solvation [My Copy] J. Phys. Chem. B (10 May 2008) by Scott M. Shell, Ryan Ritterson, Ken A. Dill posted to explicit_solvation gb molecular_dynamics by onufriev on 2008-08-22 18:59:21 as along with 2 people allmensch middledomain
	How Well Does Poisson-Boltzmann Implicit Solvent Agree with Explicit Solvent? A Quantitative Analysis [My Copy] J Phys Chem B., Vol. 110, 18680. by Tan posted to explicit_solvation implicit_solvation pb by onufriev on 2008-03-08 22:26:41 as
	Solvent reaction field potential inside an uncharged globular protein: A bridge between implicit and explicit solvent models? [My Copy] The Journal of Chemical Physics, Vol. 127, No. 15. (2007) by David S. Cerutti, Nathan A. Baker, Andrew J. Mccammon posted to explicit_solvation implicit_solvation by onufriev on 2008-03-08 20:55:40 as along with 2 people and 1 group flbarroso sobolevnrm baker-group
	Secondary Structure Bias in Generalized Born Solvent Models: Comparison of Conformational Ensembles and Free Energy of Solvent Polarization from Explicit and Implicit Solvation [My Copy] J. Phys. Chem. B, Vol. 111, No. 7. (22 February 2007), pp. 1846-1857. by D. R. Roe, A. Okur, L. Wickstrom, V. Hornak, C. Simmerling posted to explicit_solvation gb implicit_solvation by onufriev on 2008-03-06 01:54:57 as along with 5 people and 1 group RamuAnandakrishnan flbarroso baaden choonpeng sobolevnrm baker-group
	Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15230-15235. by Isabella Daidone, Martin B. Ulmschneider, Alfredo Di Nola, Andrea Amadei, Jeremy C. Smith posted to explicit_solvation implicit_solvation molecular_dynamics by onufriev on 2007-12-28 02:03:54 as along with 4 people qshao jjurban barmak7282 choonpeng

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implicit_solvation	60
gb	51
molecular_dynamics	36
nucleosome	36
pb	27
protein_folding	24
pka	22
electrostatics	21
dna	20
dna_bending	19
histone_acetylation	19
dna_electrostatics	15
dna_ions	15
higher_order_chromatin	15
protein_ligand	15
nucleosome_stability	13
nucleosome_assembly	11
beyond_pb	8
ions	8
water_models	8
explicit_solvation	7
gb_membrane	7
myoglobin	7
protein_dynamics	7
protein_electrostatics	7
coarse-grain	6
dielectric_in_biopolymers	6
dna_ab	6
dna_nano	5
md_dna	5
pedagogical	5
polyamines	5
surface	5
dna_stacking	4
drug_design	4
multiscale	4
ph	4
phosphorylation	4
rnai	4
image_charge	3
molecular_geometry	3
qmmm	3
rna_sec_structure	3
water_in_biopolymers	3
dna_bend	2
dna_stretching	2
ewald	2
free_energy	2
physics_philosophy	2
salt_bridge	2
analytical	1
br	1
charge_asymmetry	1
classical_mechanics	1
coarse_grain	1
dna_md	1
extremophile	1
hnox	1
monte_carlo	1
non_equilibrium_statmech	1
nucleosome_positioning	1
nucleus	1
performance	1
physics_fundamentals	1
protein_stability	1
spermine	1
time_scale	1
water_molecules	1

onufriev's explicit_solvation [7 articles] Export

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