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onufriev's md_dna [5 articles] Export

Recent papers added to onufriev's library classified by the tag md_dna. You can also see everyone's md_dna.

	Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA [My Copy] Biophys. J., Vol. 95, No. 1. (1 July 2008), pp. 257-272. by Kelly M. Knee, Surjit B. Dixit, Colin E. Aitken, Sergei Ponomarev, D. L. Beveridge, Ishita Mukerji posted to dna_ab md_dna by onufriev on 2008-09-01 22:24:04 as
	Molecular Dynamics Simulations of Nucleic Acids with a Generalized Born Solvation Model [My Copy] J. Am. Chem. Soc., Vol. 122, No. 11. (22 March 2000), pp. 2489-2498. by V. Tsui, D. A. Case posted to dna_electrostatics md_dna by onufriev on 2008-08-01 19:52:45 as
	Recent advances in the study of nucleic acid flexibility by molecular dynamics [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Modesto Orozco, Agnes Noy, Alberto Pérez posted to dna_bending md_dna by onufriev on 2008-06-16 23:56:07 as along with 4 people and 1 group allmensch Elena_Zubova sobolevnrm mazo baker-group
	Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules [My Copy] Journal of Computational Chemistry, Vol. 29, No. 7. (2008), pp. 1113-1130. by Ninad V. Prabhu, Manoranjan Panda, Qingyi Yang, Kim A. Sharp posted to implicit_solvation md_dna molecular_dynamics by onufriev on 2008-03-09 01:52:28 as along with 5 people and 1 group ras Elena_Zubova sobolevnrm RamuAnandakrishnan dimka baker-group
	DNA basepair step deformability inferred from molecular dynamics simulations. [My Copy] Biophysical journal, Vol. 85, No. 5. (1 November 2003), pp. 2872-2883. by Filip Lankas, Jirí Sponer, Jörg Langowski, Thomas E. Cheatham posted to dna_bending md_dna by onufriev on 2007-11-16 16:38:29 as along with 3 people and 1 group oteri Elena_Zubova ruvido Structural Biology Group TorVergata

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implicit_solvation	60
gb	49
molecular_dynamics	36
nucleosome	36
pb	25
protein_folding	24
pka	22
electrostatics	20
dna_bending	19
histone_acetylation	19
dna	18
dna_electrostatics	15
higher_order_chromatin	15
protein_ligand	15
nucleosome_stability	13
dna_ions	12
nucleosome_assembly	11
beyond_pb	8
ions	8
water_models	8
explicit_solvation	7
gb_membrane	7
myoglobin	7
protein_dynamics	7
protein_electrostatics	7
coarse-grain	6
dielectric_in_biopolymers	6
dna_ab	6
dna_nano	5
md_dna	5
pedagogical	5
polyamines	5
surface	5
dna_stacking	4
drug_design	4
multiscale	4
ph	4
phosphorylation	4
rnai	4
image_charge	3
molecular_geometry	3
qmmm	3
rna_sec_structure	3
water_in_biopolymers	3
dna_bend	2
dna_stretching	2
ewald	2
free_energy	2
physics_philosophy	2
br	1
charge_asymmetry	1
classical_mechanics	1
coarse_grain	1
dna_md	1
extremophile	1
hnox	1
monte_carlo	1
non_equilibrium_statmech	1
nucleosome_positioning	1
nucleus	1
performance	1
physics_fundamentals	1
protein_stability	1
time_scale	1
water_molecules	1

onufriev's md_dna [5 articles] Export

onufriev's tags