onufriev's protein_folding [24 articles] Export

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	Protein folding by zipping and assembly. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 29. (17 July 2007), pp. 11987-11992. by S. B. Ozkan, G. A. Wu, J. D. Chodera, K. A. Dill posted to gb protein_folding by onufriev on 2009-06-21 05:39:45 as along with 4 people aqeel wouterboomsma cdeane ARobson
	Emergence of preferred structures in a simple model of protein folding. [My Copy] Science (New York, N.Y.), Vol. 273, No. 5275. (2 August 1996), pp. 666-669. by H. Li, R. Helling, C. Tang, N. Wingreen posted to protein_folding by onufriev on 2009-03-16 20:16:30 as along with 1 person kirasato
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science (New York, N.Y.), Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to protein_folding by onufriev on 2009-02-05 22:44:02 as along with 10 people bmduggan kgutwin Diego_Prada apaydin dfgreen jwm hmk heymiki kevinchannon ca3295
	Protein folding and misfolding [My Copy] Nature, Vol. 426, No. 6968. (18 December 2003), pp. 884-890. by Christopher M. Dobson posted to protein_folding by onufriev on 2009-02-05 22:33:45 as along with 8 people and 1 group Diego_Prada chiufanlee penka allmensch choonpeng anyscientist dougjoemartin Ema Nie
	The protein folding problem: when will it be solved? [My Copy] Curr Opin Struct Biol (13 June 2007) by Ken A A. Dill, S Banu B. Ozkan, Thomas R R. Weikl, John D D. Chodera, Vincent A A. Voelz posted to protein_folding by onufriev on 2008-11-10 01:50:30 as along with 8 people flbarroso wouterboomsma cat_worth cactus Jporci cdeane kalicuta sebk
	Coupling Between Folding and Ionization Equilibria: Effects of pH on the Conformational Preferences of Polypeptides [My Copy] Journal of Molecular Biology (December 1996), pp. 770-783. by D. R. Ripoll, Y. N. Vorobjev, A. Liwo, J. A. Vila, H. A. Scheraga posted to ph protein_dynamics protein_folding by onufriev on 2008-11-08 22:48:34 as
	Folding of the Villin Headpiece Subdomain from Random Structures. Analysis of the Charge Distribution as a Function of pH [My Copy] Journal of Molecular Biology, Vol. 339, No. 4. (June 2004), pp. 915-925. by D. Ripoll posted to implicit_solvation ph protein_folding by onufriev on 2008-11-08 22:44:59 as
	Diffusional limits to the speed of protein folding: fact or friction? [My Copy] Journal of Physics: Condensed Matter, Vol. 17, No. 18. (2005), pp. S1503-S1514. by Stephen J. Hagen, Linlin Qiu, Suzette A. Pabit posted to protein_folding by onufriev on 2008-11-08 22:32:40 as
	Peptide folding simulations [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 2. (April 2003), pp. 168-174. by S. Gnanakaran, Hugh Nymeyer, John Portman, Kevin Y. Sanbonmatsu, Angel E. García posted to protein_folding by onufriev on 2008-11-08 22:30:09 as along with 1 person loison
	Folding simulations of a three-stranded antiparallel β-sheet peptide [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 20. (2000), pp. 10780-10785. by Philippe Ferrara, Amedeo Caflisch posted to implicit_solvation protein_folding by onufriev on 2008-11-08 22:24:24 as along with 1 person doktornoe
	Linking folding with aggregation in Alzheimer's beta-amyloid peptides [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 43. (23 October 2007), pp. 16880-16885. by Jana Khandogin, Charles L. Brooks posted to pka protein_dynamics protein_folding by onufriev on 2008-11-01 02:33:42 as along with 3 people and 1 group scampos Diego_Prada sobolevnrm baker-group
	All-atom level direct folding simulation of a beta beta alpha miniprotein [My Copy] The Journal of Chemical Physics, Vol. 128, No. 10. (2008) by Soonmin Jang, Eunae Kim, Youngshang Pak posted to protein_folding by onufriev on 2008-10-31 00:15:08 as
	Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 1. (2007), pp. 53-60. by Soonmin Jang, Eunae Kim, Youngshang Pak posted to protein_folding by onufriev on 2008-10-30 23:56:07 as
	Influence of temperature, friction, and random forces on folding of the B-domain of staphylococcal protein A: All-atom molecular dynamics in implicit solvent [My Copy] Journal of Computational Chemistry, Vol. 28, No. 6. (2007), pp. 1068-1082. by Anna Jagielska, Harold A. Scheraga posted to gb protein_folding by onufriev on 2008-09-12 00:21:32 as along with 2 people choonpeng jwagoner
	Ab Initio Folding of Albumin Binding Domain from All-Atom Molecular Dynamics Simulation [My Copy] J. Phys. Chem. B, Vol. 111, No. 19. (17 May 2007), pp. 5458-5463. by H. Lei, Y. Duan posted to gb protein_folding by onufriev on 2008-09-12 00:16:28 as
	Balancing Solvation and Intramolecular Interactions: Toward a Consistent Generalized Born Force Field [My Copy] Journal of the American Chemical Society, Vol. 128, No. 11. (1 March 2006), pp. 3728-3736. by Jianhan Chen, Wonpil Im, Charles L. Brooks posted to gb protein_folding by onufriev on 2008-09-12 00:11:56 as along with 5 people ckmyo oteri yxue dfgreen bilab
	A residue-pairwise generalized born scheme suitable for protein design calculations. [My Copy] The journal of physical chemistry. B, Vol. 109, No. 47. (1 December 2005), pp. 22667-22673. by G. Archontis, T. Simonson posted to gb protein_folding by onufriev on 2008-09-12 00:02:35 as
	Computational sidechain placement and protein mutagenesis with implicit solvent models. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 853-867. by A. Lopes, A. Alexandrov, C. Bathelt, G. Archontis, T. Simonson posted to implicit_solvation protein_folding by onufriev on 2008-09-11 20:20:25 as along with 1 person msuarezdiez
	Solvent viscosity dependence of the folding rate of a small protein: Distributed computing study [My Copy] Journal of Computational Chemistry, Vol. 24, No. 12. (2003), pp. 1432-1436. by Bojan Zagrovic, Vijay Pande posted to gb implicit_solvation protein_folding by onufriev on 2008-09-10 05:33:35 as
	Potential energy functions for protein design. [My Copy] Curr Opin Struct Biol (24 March 2007) by F Edward E. Boas, Pehr B B. Harbury posted to implicit_solvation protein_folding by onufriev on 2008-08-13 02:13:24 as along with 5 people kgutwin krapnik msuarezdiez BragilMassoud aalibes
	Free energy landscape of protein folding in water: Explicit vs. implicit solvent [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. 2. (2003), pp. 148-161. by Ruhong Zhou posted to gb implicit_solvation protein_folding by onufriev on 2008-03-06 01:49:56 as along with 5 people chemrahul82 flbarroso choonpeng RamuAnandakrishnan msuarezdiez
	Ab Initio Folding of Helix Bundle Proteins Using Molecular Dynamics Simulations [My Copy] J. Am. Chem. Soc., Vol. 125, No. 48. (3 December 2003), pp. 14841-14846. by S. Jang, E. Kim, S. Shin, Y. Pak posted to implicit_solvation protein_folding by onufriev on 2008-03-06 00:28:00 as
	Simulation of Folding of a Small Alpha-helical Protein in Atomistic Detail using Worldwide-distributed Computing [My Copy] Journal of Molecular Biology, Vol. 323, No. 5. (08 November 2002), pp. 927-937. by Bojan Zagrovic, Christopher D. Snow, Michael R. Shirts, Vijay S. Pande posted to implicit_solvation protein_folding by onufriev on 2008-03-05 23:50:04 as along with 1 person georgwachter
	Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 13. (24 June 2003), pp. 7587-7592. by Jed W. Pitera, William Swope posted to implicit_solvation protein_folding by onufriev on 2008-03-05 23:45:29 as along with 1 person carlosjavierna

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implicit_solvation	60
gb	49
molecular_dynamics	36
nucleosome	36
pb	25
protein_folding	24
pka	22
electrostatics	20
dna_bending	19
histone_acetylation	19
dna	18
dna_electrostatics	15
higher_order_chromatin	15
protein_ligand	15
nucleosome_stability	13
dna_ions	12
nucleosome_assembly	11
beyond_pb	8
ions	8
water_models	8
explicit_solvation	7
gb_membrane	7
myoglobin	7
protein_dynamics	7
protein_electrostatics	7
coarse-grain	6
dielectric_in_biopolymers	6
dna_ab	6
dna_nano	5
md_dna	5
pedagogical	5
polyamines	5
surface	5
dna_stacking	4
drug_design	4
multiscale	4
ph	4
phosphorylation	4
rnai	4
image_charge	3
molecular_geometry	3
qmmm	3
rna_sec_structure	3
water_in_biopolymers	3
dna_bend	2
dna_stretching	2
ewald	2
free_energy	2
physics_philosophy	2
br	1
charge_asymmetry	1
classical_mechanics	1
coarse_grain	1
dna_md	1
extremophile	1
hnox	1
monte_carlo	1
non_equilibrium_statmech	1
nucleosome_positioning	1
nucleus	1
performance	1
physics_fundamentals	1
protein_stability	1
time_scale	1
water_molecules	1

onufriev's protein_folding [24 articles] Export

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