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operon's library [1023 articles]

Recent papers added to operon's ordered by to_read.
  • Analysis of P element transposase protein-DNA interactions during the early stages of transposition.
    J Biol Chem (19 July 2007)
    by Mei Tang, Ciro Cecconi, Carlos Bustamante, Donald C C Rio
    posted to interaction protein structure transposon by operon on 2007-07-24 16:03:47 as *
  • Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination
    Biochemistry and Cell Biology, Vol. 85, No. 2. (1 April 2007), pp. 218-226.
    by Zhao, Wei-Ming, Wang, Hong, Zhou, Ya-Bin, Luan, Yi, Qi, Mei, Zheng, Yan, Cheng, Yi-Zhe, Tang, Wei, Liu, Juan, Yu, Han, Yu, Xiu-Ping, Fan, Yi-Jun, Yang, Xi
    posted to prokaryote codon_bias immunology vaccine by operon on 2007-07-23 19:58:10 as *
  • BOV - a web-based BLAST output visualization tool
    BMC Genomics, Vol. 9 (15 September 2008), 414.
    by Rajesh Gollapudi, Kashi Revanna, Chris Hemmerich, Sarah Schaack, Qunfeng Dong
    posted to software similarity homology bioinformatics by operon on 2008-09-17 16:15:40 as ** along with 3 people and 1 group natstreet druvus cisevol BergmanLab
  • Benchmarking natural-language parsers for biological applications using dependency graphs
    BMC Bioinformatics, Vol. 8 (25 January 2007), 24.
    by Andrew B Clegg, Adrian J Shepherd
    posted to software programming parsing bioinformatics by operon on 2008-09-14 03:06:30 as ** along with 3 people bhaddow kemo TheresaNiederberger
  • Ciência e Tecnologia de Alimentos - Study of different parameters in the production of lytic enzymes
    posted to microbiology enzymes biotechnology by operon on 2008-09-05 15:40:41 as **
  • Effect of active smoking on the human bronchial epithelium transcriptome
    BMC Genomics, Vol. 8 (29 August 2007), 297.
    by Raj Chari, Kim M Lonergan, Raymond T Ng, Calum Macaulay, Wan L Lam, Stephen Lam
    posted to bioinformatics biotechnology cancer expression sage by operon on 2008-07-22 14:39:35 as **
  • BRM-Parser: A tool for comprehensive analysis of BLAST and RepeatMasker results
    posted to bioinformatics ortholog software transposon by operon on 2008-07-09 16:00:46 as ** along with 1 person kiara
  • PuReD-MCL: a graph-based PubMed document clustering methodology.
    Bioinformatics (Oxford, England) (1 July 2008)
    by T Theodosiou, N Darzentas, L Angelis, C A A Ouzounis
    posted to bioinformatics literature software by operon on 2008-07-07 23:30:42 as ** along with 4 people nuin sjc jyuh waszak
  • Retrotransposons and regulatory suites.
    Bioessays, Vol. 27, No. 2. (February 2005), pp. 122-125.
    by JA Shapiro
    posted to doctorate genomics transposon by operon on 2008-05-13 14:45:52 as ** along with 5 people HugoMarcelo LeightonP briann mcphee kiara
  • Why repetitive DNA is essential to genome function.
    Biological reviews of the Cambridge Philosophical Society, Vol. 80, No. 2. (May 2005), pp. 227-250.
    by JA Shapiro, R von Sternberg
    posted to doctorate genomics transposon by operon on 2008-05-13 14:45:44 as **
  • How repeated retroelements format genome function.
    Cytogenetic and genome research, Vol. 110, No. 1-4. (2005), pp. 108-116.
    by R von Sternberg, JA Shapiro
    posted to doctorate genomics transposon by operon on 2008-05-13 14:45:41 as ** along with 2 people HugoMarcelo kiara
  • Adaptive genic evolution in the Drosophila genomes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2271-2276.
    by JA Shapiro, W Huang, C Zhang, MJ Hubisz, J Lu, DA Turissini, S Fang, HY Wang, RR Hudson, R Nielsen, Z Chen, CI Wu
    posted to doctorate genomics transposon by operon on 2008-05-13 14:45:38 as ** along with 1 person skumagai
  • Bacteria are small but not stupid: cognition, natural genetic engineering and socio-bacteriology
    Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, Vol. 38, No. 4. (December 2007), pp. 807-819.
    by JA Shapiro
    posted to doctorate genomics master transposon by operon on 2008-05-13 14:45:34 as ** along with 1 person bayesian
  • A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering.
    Gene, Vol. 345, No. 1. (17 January 2005), pp. 91-100.
    by JA Shapiro
    posted to doctorate genomics transposon by operon on 2008-05-13 14:43:59 as ** along with 2 people N0131826 rebeccamancy
  • Transposable elements and the dynamic somatic genome.
    Genome biology, Vol. 8 Suppl 1 (2007)
    by LS Collier, DA Largaespada
    posted to doctorate evolution genomics transposon by operon on 2008-05-13 14:39:28 as **
  • DynGO: a tool for visualizing and mining of Gene Ontology and its associations.
    BMC bioinformatics, Vol. 6 (2005)
    by H Liu, ZZ Hu, CH Wu
    posted to genomics ontology visualization by operon on 2008-04-22 04:53:00 as ** along with 2 people jyuh ndiaz
  • Visualizing information across multidimensional post-genomic structured and textual databases.
    Bioinformatics (Oxford, England), Vol. 21, No. 8. (15 April 2005), pp. 1659-1667.
    by Y Tao, C Friedman, YA Lussier
    posted to genomics statistics visualization by operon on 2008-04-22 04:41:32 as **
  • Protein variability among Mycoplasma hyopneumoniae isolates.
    Veterinary microbiology, Vol. 120, No. 3-4. (10 March 2007), pp. 284-291.
    by D Calus, M Baele, T Meyns, A de Kruif, P Butaye, A Decostere, F Haesebrouck, D Maes
    posted to genomics master mycoplasma pathogenics reduction by operon on 2008-04-18 12:07:37 as ** along with 1 person shana
  • Kin selection and the evolution of virulence
    Heredity, Vol. aop, No. current.
    by A Buckling, MA Brockhurst
    posted to evolution master pathogenics by operon on 2008-04-18 11:58:26 as **
  • The virus-immunity ecosystem.
    Archives of virology. Supplementum, No. 19. (2005), pp. 17-32.
    by PC Doherty, SJ Turner
    posted to evolution immunology master pathogenics by operon on 2008-04-18 08:17:15 as **
  • Ecological and evolutionary principles in immunology
    Ecology Letters, Vol. 9, No. 6. (June 2006), pp. 694-705.
    by Wodarz, Dominik
    posted to evolution immunology master by operon on 2008-04-18 08:16:48 as ** along with 2 people jjray jkoella
  • Transposable element orientation bias in the Drosophila melanogaster genome.
    J Mol Evol, Vol. 61, No. 6. (December 2005), pp. 733-741.
    by AD Cutter, JM Good, CT Pappas, MA Saunders, DM Starrett, TJ Wheeler
    posted to doctorate by operon on 2008-04-17 06:18:02 as ** along with 1 person and 1 group penka Nie
  • Population dynamics of defensive symbionts in aphids.
    Proceedings. Biological sciences / The Royal Society, Vol. 275, No. 1632. (7 February 2008), pp. 293-299.
    by KM Oliver, J Campos, NA Moran, MS Hunter
    posted to master symbiosis by operon on 2008-04-17 05:01:33 as **
  • Phylogeographic patterns of host-race evolution in Tephritis conura (Diptera: Tephritidae)
    Molecular Ecology, Vol. 15, No. 3. (March 2006), pp. 681-694.
    by Thorsten Diegisser, Alfred Seitz, Jes Johannesen
    posted to master by operon on 2008-04-17 04:49:48 as ** along with 1 person jsunday
  • Molecular characterization and determination of antimicrobial resistance of Mycoplasma gallisepticum isolated from chickens
    Veterinary Microbiology, Vol. 125, No. 1-2. (15 November 2007), pp. 59-65.
    by Somsak Pakpinyo, Jiroj Sasipreeyajan
    posted to master by operon on 2008-04-17 04:45:49 as **
  • In vitro susceptibilities of field isolates of Mycoplasma agalactiae
    The Veterinary Journal, Vol. In Press, Corrected Proof
    by NT Antunes, MM Tavi´o, P Assunção, RS Rosales, C Poveda, de La, MC Gil, JB Poveda
    posted to master by operon on 2008-04-17 04:45:46 as **
  • The role of Ureaplasma nucleoside monophosphate kinases in the synthesis of nucleoside triphosphates
    FEBS Journal, Vol. 274, No. 8. (April 2007), pp. 1983-1990.
    by Wang, Liya
    posted to master by operon on 2008-04-17 04:45:37 as **
  • Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies.
    The EMBO journal, Vol. 14, No. 18. (15 September 1995), pp. 4578-4588.
    by H Urlaub, V Kruft, O Bischof, EC Müller, B Wittmann-Liebold
    posted to master by operon on 2008-04-17 04:45:33 as **
  • Molecular characterisation of ABC transporter type FtsE and FtsX proteins of Mycobacterium tuberculosis
    Archives of Microbiology, Vol. 185, No. 2. (11 March 2006), pp. 147-158.
    by Mushtaq Mir, Haryadi Rajeswari, Usha Veeraraghavan, Parthasarathi Ajitkumar
    posted to master by operon on 2008-04-17 04:45:25 as **
  • Structural consequences of the active site substitution Cys181 ==> Ser in metallo-beta-lactamase from Bacteroides fragilis.
    Protein science : a publication of the Protein Society, Vol. 8, No. 1. (January 1999), pp. 249-252.
    by Z Li, BA Rasmussen, O Herzberg
    posted to master by operon on 2008-04-17 04:45:20 as **
  • Origin and fate of repeats in bacteria.
    Nucleic Acids Res, Vol. 30, No. 13. (1 July 2002), pp. 2987-2994.
    by G Achaz, EP Rocha, P Netter, E Coissac
    posted to master by operon on 2008-04-17 04:44:48 as ** along with 1 person treangen
  • Simple sequence repeats in prokaryotic genomes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 20. (15 May 2007), pp. 8472-8477.
    by Jan Mrazek, Xiangxue Guo, Apurva Shah
    posted to master by operon on 2008-04-17 04:44:42 as **
  • Detection of variable DNA repeats in diverse eukaryotic microorganisms by a single set of polymerase chain reaction primers.
    Journal of clinical microbiology, Vol. 29, No. 12. (December 1991), pp. 2746-2751.
    by DE Riley, M Samadpour, JN Krieger
    posted to master by operon on 2008-04-17 04:44:33 as **
  • A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species
    Nucleic Acids Research, Vol. 33, No. 21. (2005), pp. 6816-6822.
    by Christoforos Nikolaou, Yannis Almirantis
    posted to master by operon on 2008-04-17 04:44:21 as **
  • Sympatric speciation in parasites - what is sympatry?
    Trends in Parasitology, Vol. 19, No. 9. (September 2003), pp. 400-404.
    by Karen D Mccoy
    posted to master by operon on 2008-04-17 04:43:54 as **
  • How adaptive is parasite species diversity?
    International Journal for Parasitology, Vol. 37, No. 8-9. (July 2007), pp. 851-860.
    by Igor Emelianov
    posted to master by operon on 2008-04-17 04:43:52 as **
  • Directional mutation pressure, selective constraints, and genetic equilibria
    Journal of Molecular Evolution, Vol. 34, No. 2. (1 February 1992), pp. 95-114.
    by Noboru Sueoka
    posted to master by operon on 2008-04-17 04:43:37 as **
  • Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures.
    Journal of bacteriology, Vol. 184, No. 20. (October 2002), pp. 5733-5745.
    by J Ma, A Campbell, S Karlin
    posted to master by operon on 2008-04-17 04:43:33 as **
  • Small steps or giant leaps for male-killers? Phylogenetic constraints to male-killer host shifts
    BMC Evolutionary Biology, Vol. 7 (29 November 2007), 238.
    by Matthew C Tinsley, Michael EN Majerus
    posted to master by operon on 2008-04-17 04:43:27 as **
  • Impact of transcriptional properties on essentiality and evolutionary rate.
    Genetics (22 October 2006)
    by Jung Kyoon K Choi
    posted to master by operon on 2008-04-17 04:43:19 as ** along with 1 person bjorns
  • CodonO: codon usage bias analysis within and across genomes.
    Nucleic Acids Res (30 May 2007)
    by Michael C C Angellotti, Shafquat B B Bhuiyan, Guorong Chen, Xiu-Feng F Wan
    posted to master by operon on 2008-04-17 04:42:59 as ** along with 3 people and 1 group papamicd saunders kiara Bioinformatics
  • Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes
    Proceedings of the National Academy of Sciences, Vol. 101, No. 9. (2 March 2004), pp. 2951-2956.
    by Arnon Paz, David Mester, Ivan Baca, Eviatar Nevo, Abraham Korol
    posted to master by operon on 2008-04-17 04:42:55 as **
  • PLoS Genetics: Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome
    posted to master by operon on 2008-04-17 04:42:19 as **
  • A New Test for Selection Applied to Codon Usage in Drosophila simulans and D. mauritiana.
    Journal of molecular evolution (21 February 2008)
    by Ana Llopart, Aelén Mabillé, Jennifer R Peters-Hall, Josep M Comeron, Richard M Kliman
    posted to doctorate by operon on 2008-04-17 04:41:26 as **
  • Replication fork barriers: pausing for a break or stalling for time?
    EMBO reports, Vol. 8, No. 4. (April 2007), pp. 346-353.
    by K Labib, B Hodgson
    posted to master by operon on 2008-04-17 04:39:53 as **
  • Impairment of replication fork progression mediates RNA polII transcription-associated recombination
    The EMBO Journal, Vol. aop, No. current. (03 March 2005)
    by Felix Prado, Andres Aguilera
    posted to master by operon on 2008-04-17 04:39:40 as **
  • Type I elements mediate replication fork pausing at conserved upstream sites in the Tetrahymena thermophila ribosomal DNA minichromosome.
    Molecular and cellular biology, Vol. 17, No. 8. (August 1997), pp. 4517-4525.
    by DM MacAlpine, Z Zhang, GM Kapler
    posted to master by operon on 2008-04-17 04:38:56 as **
  • Synonymous codon usage is subject to selection in thermophilic bacteria
    Nucl. Acids Res., Vol. 30, No. 19. (1 October 2002), pp. 4272-4277.
    by David J Lynn, Gregory A Singer, Donal A Hickey
    posted to master by operon on 2008-04-17 04:38:35 as **
  • Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation.
    The EMBO journal, Vol. 18, No. 20. (15 October 1999), pp. 5675-5682.
    by M Elías-Arnanz, M Salas
    posted to master by operon on 2008-04-17 04:38:02 as **
  • Base composition bias might result from competition for metabolic resources
    Trends in Genetics, Vol. 18, No. 6. (1 June 2002), pp. 291-294.
    by Eduardo P Rocha, Antoine Danchin
    posted to master by operon on 2008-04-17 04:36:58 as ** along with 1 person karfunkel
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