operon's algorithm [43 articles] Export

Recent papers added to operon's library classified by the tag algorithm. You can also see everyone's algorithm.

	Algorithms for effective querying of compound graph-based pathway databases [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 376. by Ugur Dogrusoz, Ahmet Cetintas, Emek Demir, Ozgun Babur posted to graph bioinformatics algorithm by operon on 2009-11-20 03:08:43 as along with 4 people perkeo poirel calderonv dullhunk
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to phylogenetics evolution alignment algorithm by operon on 2009-10-26 18:17:31 as along with 29 people and 3 groups memerman TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Joining forces in the quest for orthologs [My Copy] Genome Biology, Vol. 10, No. 9. (2009), 403. by Toni Gabaldon, Christophe Dessimoz, Julie H. Jones, Albert Vilella, Erik Sonnhammer, Suzanna Lewis posted to ortholog evolution algorithm by operon on 2009-10-26 18:15:52 as along with 5 people and 2 groups kshameer tmmurali bdessailly ppgardne druvus Orengo Group Journal Picks Journal picks
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure protein algorithm by operon on 2009-10-26 18:15:15 as along with 5 people and 1 group barry kshameer nickolay kevinzheng1983 neils structural_bioinformatics
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to phylogenetics genomics bioinformatics alignment_methods alignment algorithm by operon on 2009-10-25 06:08:29 as along with 33 people and 2 groups Jporci walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to structure software similarity search protein homology algorithm by operon on 2009-09-01 11:25:08 as along with 7 people maria_hauser newton1234 joseolucha mijam reyez pjcite granujilla
	Phylogenetic profiles reveal evolutionary relationships within the âtwilight zoneâ of sequence similarity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (9 September 2008), pp. 13474-13479. by Gue S. Chang, Yoojin Hong, Kyung D. Ko, et al.Gaurav Bhardwaj, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum posted to similarity phylogenetics ortholog method homology evolution algorithm by operon on 2009-08-29 20:09:23 as along with 3 people druvus marck bpcusack
	A geometric approach for classification and comparison of structural variants. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i222-230. by Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael posted to evolution duplication bioinformatics algorithm by operon on 2009-08-29 20:01:00 as along with 6 people and 1 group jessopher rdiaz dakelley jonilaserson APRegier AlexBateman Journal picks
	Metrics for phylogenetic networks I: generalizations of the Robinson-Foulds metric. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 6, No. 1. (r 2009), pp. 46-61. by Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente posted to software phylogenetics network method algorithm by operon on 2009-08-24 00:17:27 as
	Detecting species-site dependencies in large multiple sequence alignments. [My Copy] Nucleic acids research, Vol. 37, No. 18. (6 October 2009), pp. 5959-5968. by Roland Schwarz, Philipp N. Seibel, Sven Rahmann, et al.Christoph Schoen, Mirja Huenerberg, Clemens Müller-Reible, Thomas Dandekar, Rachel Karchin, Jörg Schultz, Tobias Müller posted to algorithm bioinformatics evolution homology phylogenetics similarity by operon on 2009-08-10 21:54:45 as along with 2 people and 1 group davidalee svenrahmann Orengo Group Journal Picks
	Maximum likelihood genome assembly. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1101-1116. by Paul Medvedev, Michael Brudno posted to algorithm assembly bioinformatics genomics software by operon on 2009-08-02 01:52:40 as along with 7 people dakelley nuin walshtp djkt n00c natstreet druvus
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to algorithm alignment assembly bioinformatics genomics software by operon on 2009-07-28 15:08:23 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to algorithm dynamics method protein simulation structure by operon on 2009-07-13 05:12:56 as along with 5 people and 3 groups skywalkerus02 dimka sobolevnrm barry bourby baker-group structural_bioinformatics McCammon
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to algorithm expression motif patterns phylogenetics by operon on 2009-06-02 23:40:11 as along with 8 people and 3 groups dquest Stew marti Lombardo_7 megraw nuin AlexBateman scjparker EisenLab Bioinformatics - CRUK Journal picks
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to algorithm alignment bioinformatics phylogenetics software by operon on 2009-06-02 23:39:20 as along with 18 people and 1 group seb1 rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat bmduggan nuin AlexBateman djkt druvus Journal picks
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to algorithm alignment bioinformatics dna genomics software by operon on 2009-06-02 23:37:56 as along with 36 people and 4 groups jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2688-2690. by Alexandros Stamatakis posted to algorithm bioinformatics evolution method phylogenetics software by operon on 2009-06-01 01:13:06 as along with 7 people hryk jpsullivan anisbet aprasad druvus johanviklund dmp
	Efficient Likelihood Computations with Nonreversible Models of Evolution -- Boussau and Gouy 55 (5): 756 -- Systematic Biology [My Copy] posted to algorithm bioinformatics evolution method phylogenetics software by operon on 2009-06-01 01:06:03 as
	Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes -- McMahon and Sanderson 55 (5): 818 -- Systematic Biology [My Copy] posted to algorithm bioinformatics evolution method phylogenetics software by operon on 2009-06-01 01:05:38 as
	RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees [My Copy] Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 456-463. by A. Stamatakis, T. Ludwig, H. Meier posted to algorithm bioinformatics evolution phylogenetics software by operon on 2009-06-01 01:03:27 as along with 3 people biomcgary marck polpotak
	Phylogenetic models of rate heterogeneity: a high performance computing perspective [My Copy] by A. Stamatakis posted to algorithm computational molecular_clock mutation phylogenetics by operon on 2009-05-31 19:09:21 as
	Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree. [My Copy] Journal of molecular evolution, Vol. 44, No. 2. (February 1997), pp. 226-233. by J. Dopazo, J. M. Carazo posted to ai algorithm bioinformatics evolution phylogenetics by operon on 2009-05-31 03:22:38 as
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to algorithm bioinformatics sequencing by operon on 2009-05-22 18:17:35 as along with 22 people and 4 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	baobabLUNA: the solution space of sorting by reversals [My Copy] Bioinformatics (28 April 2009), btp285. by Marilia D. Braga posted to algorithm bioinformatics rearrangements software by operon on 2009-05-20 15:04:28 as along with 1 person nuin
	Data structures and compression algorithms for genomic sequence data [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1731-1738. by Marty C. Brandon, Douglas C. Wallace, Pierre Baldi posted to algorithm bioinformatics computational software by operon on 2009-05-17 19:42:59 as along with 4 people and 1 group jandot ollieredfernwork reyez dansullivanblk Orengo Group Journal Picks
	Performance Evaluation of Protein Sequence Clustering Tools [My Copy] Computational Science – ICCS 2005 (2005), pp. 877-885. by Haifeng Liu, Loo-Nin Teow posted to algorithm bioinformatics clustering homology protein similarity software by operon on 2009-05-08 07:09:30 as
	A parallel strategy for biological sequence alignment in restricted memory space [My Copy] Journal of Parallel and Distributed Computing, Vol. 68, No. 4. (April 2008), pp. 548-561. by R. Batista, A. Boukerche, A. Demelo posted to algorithm alignment bioinformatics computational parallel by operon on 2009-05-06 23:05:49 as along with 1 person n00c
	penalizedSVM: a R-package for feature selection SVM classification [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1711-1712. by Natalia Becker, Wiebke Werft, Grischa Toedt, Peter Lichter, Axel Benner posted to ai algorithm bioinformatics classification patterns software svm by operon on 2009-04-29 17:33:11 as along with 11 people and 2 groups jfr sotacam ollieredfernwork rdiaz anf lwaldron dswan TRHvidsten neils phoenixzxl giovanni Orengo Group Journal Picks Bioinformatics
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to algorithm bioinformatics evolution functional protein structure by operon on 2009-03-31 16:36:42 as along with 8 people and 1 group davidmam jperkins reyez TRHvidsten iaolier dimka gwallau idoerg Orengo Group Journal Picks
	Sequence context-specific profiles for homology searching [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3770-3775. by A. Biegert, J. Söding posted to algorithm bioinformatics evolution homology search similarity software by operon on 2009-03-19 23:32:17 as along with 7 people yylin ikirmitz TRHvidsten dakelley martainn phoenixzxl zwang
	Molecular phylogenetics: testing evolutionary hypotheses. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 502 (2009), pp. 131-168. by D. A. Walsh, A. K. Sharma posted to algorithm evolution phylogenetics by operon on 2009-01-08 11:59:03 as along with 2 people and 1 group gwallau druvus LabDros
	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted to algorithm bioinformatics comparative software by operon on 2008-12-16 12:33:09 as along with 9 people BioNica guhjy dakelley semrich gjuggler djkt rschulz birney druvus
	Genome comparison without alignment using shortest unique substrings. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by B. Haubold, N. Pierstorff, F. Möller, T. Wiehe posted to algorithm analysis bioinformatics genomics software by operon on 2008-12-15 17:16:51 as along with 2 people druvus treangen
	False-positive results obtained from the branch-site test of positive selection. [My Copy] Genes & genetic systems, Vol. 83, No. 4. (August 2008), pp. 331-338. by Y. Suzuki posted to algorithm bioinformatics evolution phylogenetics selection by operon on 2008-11-29 03:30:24 as
	A new sequence distance measure for phylogenetic tree construction [My Copy] Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2122-2130. by Hasan H. Otu, Khalid Sayood posted to algorithm bioinformatics doctorate evolution phylogenetics sequencing by operon on 2008-10-30 13:55:12 as along with 1 person treangen
	CBESW: Sequence Alignment on the Playstation 3 [My Copy] BMC Bioinformatics, Vol. 9 (17 September 2008), 377. by Adrianto Wirawan, Chee K. Kwoh, Tri H. Nim, Bertil Schmidt posted to algorithm bioinformatics computational hardware by operon on 2008-10-30 13:52:44 as along with 5 people and 1 group apaydin phoenixzxl sci91078 nuin reyez LabDros
	Feature selection environment for genomic applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 October 2008), 451. by Fabricio Lopes, David Martins, Roberto Cesar posted to algorithm bioinformatics genomics software by operon on 2008-10-24 14:51:43 as along with 6 people rdiaz jfr TRHvidsten GustavoG imina lptolik
	Identification of repeat structure in large genomes using repeat probability clouds [My Copy] Analytical Biochemistry, Vol. 380, No. 1. (01 September 2008), pp. 77-83. by W. Gu, T. Castoe, D. Hedges, M. Batzer, D. Pollock posted to algorithm bioinformatics comparative genomics repeats transposon by operon on 2008-10-19 14:06:24 as along with 2 people timflutre orzenil
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted to algorithm bioinformatics evolution genomics ortholog software by operon on 2008-10-15 17:20:51 as along with 7 people and 3 groups cgaugain ana indigoviolet dquest ninch rvosa cerca structural_bioinformatics Bioinformatics EisenLab
	DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. [My Copy] Algorithms for molecular biology : AMB, Vol. 3, No. 1. (27 May 2008), 6. by Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern posted to algorithm alignment bioinformatics software by operon on 2008-10-15 13:27:31 as along with 7 people Copper_Calcio walshtp BioNica druvus treangen reyez dquest
	Empirical comparison of ab initio repeat finding programs [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2284-2294. by Surya Saha, Susan Bridges, Zenaida V. Magbanua, Daniel G. Peterson posted to transposon software repeats method evolution bioinformatics algorithm by operon on 2008-03-10 00:38:43 as along with 10 people thegoose2 orzenil natstreet druvus treangen timflutre wisdom_love Ema GustavoLacerda tharris
	Novel Approach for the Numerical Characterization of Molecular Chirality [My Copy] J. Chem. Inf. Model. (5 April 2007) by R. Natarajan, S. C. Basak, T. S. Neumann posted to 3d algorithm chirality molecule qsar by operon on 2007-04-15 23:06:19 as
	Intel Press - The Software Optimization Cookbook [My Copy] posted to algorithm development optimization software by operon on 2007-03-26 14:00:44 as

Note: You may cite this page as: http://www.citeulike.org/user/operon/tag/algorithm

evolution	931
master	794
transposon	527
phylogenetics	423
genomics	399
selection	239
bioinformatics	230
reduction	220
mutation	209
software	190
mycoplasma	103
doctorate	87
annotation	74
prokaryote	73
drosophila	65
retroelement	62
arthropod	60
protein	57
structure	56
algorithm	43
method	41
genometrics	40
horizontal_transfer	39
ortholog	35
dna	35
statistics	31
database	31
immunology	31
pathogenics	31
bacteria	31
repeats	30
symbiosis	30
codon_bias	29
rearrangements	28
genetics	28
sequencing	27
analysis	25
expression	23
biotechnology	23
clustering	22
molecular	20
transcription	20
comparative	19
gene	19
social	19
classification	19
assembly	17
similarity	17
bayes	17
systems_biology	16
insect	16
population	15
data_mining	15
biophysics	15
microarray	14
modelling	14
molecular_clock	14
ontology	14
cell	13
ai	13
simulation	13
science	13
biodiversity	13
computational	12
chromosome	12
hardware	12
proteomics	12
search	12
alignment	12
human	11
rna	11
functional	11
eukaryotic	11
transcriptome	10
literature	10
network	10
homology	10
regulation	10
visualization	9
recombination	9
dynamics	9
metagenomics	9
cancer	8
plant	7
duplication	7
enzymes	7
multivariate	7
molecule	7
development	7
programming	6
3d	6
docking	6
motif	6
membrane	6
microbiology	6
biofuels	6
patterns	6
adaptation	6
repair	5
pseudogene	5
sex	5
synthesis	5
review	5
microscopy	5
data	5
repeat	5
genome	5
snp	5
strand	4
quantitative	4
virus	4
methylation	4
fluorescence	4
model	4
pathway	4
chemistry	4
pharmacogenomics	4
coalescence	4
web	4
interaction	4
python	4
transposons	4
drug_discovery	4
hmm	4
go	3
paralog	3
firmicute	3
neutralism	3
methods	3
quantum	3
diagnostics	3
fret	3
biochemistry	3
infection	3
tandem	3
biotech	3
physics	3
population_genetics	3
biology	3
vaccine	3
motif_discovery	3
nanotechnology	3
promoter	3
phylogenetic_analyses	3
r	3
mite	3
prediction	3
mcite	3
cladistics	3
alu	3
text_mining	3
graph	3
proteome	3
qsar	3
selectionism	3
health	3
intron	3
genomic	2
philosophy	2
2d	2
folding	2
sequence	2
synteny	2
splicing	2
research	2
parallel	2
energy	2
size	2
translation	2
experimental	2
circadian	2
divergence_times	2
noncoding	2
svm	2
454	2
projx	2
p6	2
helitron	2
optimization	2
metabolic	2
scientists	2
pcr	2
exon	2
pharma	2
polymorphism	2
sine	2
semantics	2
theory	2
replication	2
est	2
xml	2
phylogenetic	2
mathematics	2
fuelcell	2
gpgpu	2
epigenomics	2
haplotype	2
motifs	2
thesis	2
screening	2
design	2
transcription_factors	1
hydrogen	1
parsing	1
maximum-likelihood	1
subversion	1
symbiont	1
signal	1
projk	1
sage	1
chirality	1
medicine	1
pedigree	1
large-scale	1
behaviour	1
genotypes	1
retraction	1
genes	1
human_genome	1
protein_function	1
paper_ideas	1
genotyping	1
stress	1
phylogeny	1
bibtex	1
web_service	1
structural_genomics	1
stm	1
array	1
tree_visualization	1
thermodynamics	1
lipoprotein	1
constraints	1
hmms	1
framework	1
nmr	1
tree_topology	1
gene_prediction	1
interference	1
imprinting	1
collaboration	1
hpc	1
molecular_evolution	1
integration	1
line	1
plasticity	1
noncoding_regions	1
evolutionary_rates	1
misc	1
proteins	1
probability_distribution	1
receptor	1
microfluidic	1
taxonomy	1
projy	1
sensor	1
spot	1
grammars	1
nucleosome	1
spectroscopy	1
endophytes	1
laser	1
high-throughput	1
database_search	1
revision_control	1
chaos	1
phylogenetic_footprint	1
cool	1
metaproteomics	1
psychology	1
game	1
adaptive_evolution	1
substitution_rates	1
mcmc	1
parsimony	1
nlp	1
mechanotransduction	1
ligand	1
chromatin	1
key	1
tools	1
episome	1
gwa	1
vertebrate	1
ancient_dna	1
education	1
phytoplasma	1
alignment_methods	1
citation_count	1
graphs	1

operon's algorithm [43 articles] Export

operon's tags