operon's protein [57 articles] Export

Recent papers added to operon's library classified by the tag protein. You can also see everyone's protein.

	Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 394. by Yohan Kim, John Sidney, Clemencia Pinilla, Alessandro Sette, Bjoern Peters posted to statistics protein bayes by operon on 2009-12-02 11:53:51 as along with 1 person neils
	Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. [My Copy] BMC bioinformatics, Vol. 8 (03 August 2007), 284. by Carson Andorf, Drena Dobbs, Vasant Honavar posted to software protein genomics bioinformatics annotation ai by operon on 2009-11-28 14:17:30 as
	Evolutionary networks in the formatted protein sequence space. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 8. (October 2007), pp. 1044-1057. by Zakharia M. Frenkel, Edward N. Trifonov posted to sequence protein network graphs evolution by operon on 2009-11-28 14:12:22 as
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to structure structural_genomics protein_function protein modelling by operon on 2009-11-22 07:01:04 as along with 13 people and 1 group michaelbarton smpraveena MarcoAlvarez skhadar neils cjeans zwang Evangelia hpaces Ema renatomilani kluck janasont MuraLab
	Discriminative motifs. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 10, No. 3-4. (2003), pp. 599-615. by Saurabh Sinha posted to protein motif_discovery motif ai by operon on 2009-11-22 07:00:20 as along with 3 people wowalz nklee dquest
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature In Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to structure protein expression dna by operon on 2009-10-31 01:52:46 as along with 12 people spabit Rafa_Tapia vingron gjuggler hagechouchin443 renatomilani emptyhb sandersl Fernando_FF kintoki TRHvidsten djkt
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure protein algorithm by operon on 2009-10-26 18:15:15 as along with 5 people and 1 group barry kshameer nickolay kevinzheng1983 neils structural_bioinformatics
	3D-SURFER: software for high-throughput protein surface comparison and analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2843-2844. by David La, Juan Esquivel-Rodriguez, Vishwesh Venkatraman, et al.Bin Li, Lee Sael, Stephen Ueng, Steven Ahrendt, Daisuke Kihara posted to structure protein 3d by operon on 2009-10-26 18:15:01 as along with 3 people and 1 group kshameer renatomilani nickolay structural_bioinformatics
	A new method for revealing correlated mutations under the structural and functional constraints in proteins [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2506-2513. by Byung-Chul Lee, Dongsup Kim posted to structure protein method evolution constraints by operon on 2009-09-27 16:51:58 as along with 5 people RebeccaHamer qluo jlike zwang phoenixzxl
	Automated Docking Screens: A Feasibility Study [My Copy] Journal of Medicinal Chemistry, Vol. 52, No. 18. (24 September 2009), pp. 5712-5720. by John J. Irwin, Brian K. Shoichet, Michael M. Mysinger, et al.Niu Huang, Francesco Colizzi, Pascal Wassam, Yiqun Cao posted to structure protein ligand docking by operon on 2009-09-02 01:16:15 as along with 2 people k8jbd npt11tpn
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to structure software similarity search protein homology algorithm by operon on 2009-09-01 11:25:08 as along with 7 people maria_hauser newton1234 joseolucha mijam reyez pjcite granujilla
	Family relationships: should consensus reign?--consensus clustering for protein families [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e71-76. by Macha Nikolski, David J. Sherman posted to protein method genomics clustering bioinformatics by operon on 2009-08-31 20:41:55 as along with 1 person phoenixzxl
	Protein Sectors: Evolutionary Units of Three-Dimensional Structure [My Copy] Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to protein phylogenetics evolution by operon on 2009-08-25 01:18:50 as along with 1 person jjray
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to algorithm dynamics method protein simulation structure by operon on 2009-07-13 05:12:56 as along with 5 people and 3 groups skywalkerus02 dimka sobolevnrm barry bourby baker-group structural_bioinformatics McCammon
	ResBoost: characterizing and predicting catalytic residues in enzymes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (27 June 2009), 197. by Ron Alterovitz, Aaron Arvey, Sriram Sankararaman, Carolina Dallett, Yoav Freund, Kimmen Sjolander posted to annotation bioinformatics enzymes functional method protein software structure by operon on 2009-07-03 09:25:28 as along with 2 people and 1 group vpenelle sillitoe Orengo Group Journal Picks
	The long lifespan of two bat species is correlated with resistance to protein oxidation and enhanced protein homeostasis [My Copy] FASEB J., Vol. 23, No. 7. (1 July 2009), pp. 2317-2326. by Adam B. Salmon, Shanique Leonard, Venkata Masamsetti, et al.Anson Pierce, Andrej J. Podlutsky, Natalia Podlutskaya, Arlan Richardson, Steven N. Austad, Asish R. Chaudhuri posted to folding protein by operon on 2009-07-02 19:40:36 as along with 1 person greg
	The MPI Bioinformatics Toolkit for protein sequence analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by A. Biegert, C. Mayer, M. Remmert, J. Söding, A. N. Lupas posted to bioinformatics protein software by operon on 2009-05-31 03:47:49 as along with 5 people druvus daforerog chad_davis moborg grottenolm
	Protein microarrays: high-throughput tools for proteomics [My Copy] Expert Review of Proteomics, Vol. 6, No. 2., pp. 145-157. by Oda Stoevesandt, Michael J. Taussig, Mingyue He posted to high-throughput microarray molecular protein by operon on 2009-05-22 23:35:17 as along with 3 people fgibson nuin sjcockell
	Ulla: a program for calculating environment-specific amino acid substitution tables [My Copy] Bioinformatics (5 May 2009), btp300. by Semin Lee, Tom L. Blundell posted to evolution protein similarity by operon on 2009-05-20 15:40:18 as along with 1 person medic0747
	SVM-HUSTLEaan iterative semi-supervised machine learning approach for pairwise protein remote homology detection [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 783-790. by Shah, R. Anuj, Oehmen, S. Christopher, Webb-Robertson, Bobbie-Jo posted to ai annotation bioinformatics protein search similarity software by operon on 2009-05-20 15:37:34 as along with 1 person ptrobajo
	Gclust: trans-kingdom classification of proteins using automatic individual threshold setting [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 599-605. by Naoki Sato posted to bioinformatics classification clustering ortholog protein software by operon on 2009-05-20 15:37:08 as along with 1 person tny
	ProClust: improved clustering of protein sequences with an extended graph-based approach. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 2 (2002) by P. Pipenbacher, A. Schliep, S. Schneckener, A. Schönhuth, D. Schomburg, R. Schrader posted to clustering ortholog protein similarity by operon on 2009-05-20 15:36:19 as along with 1 person druvus
	Protein function annotation from sequence: prediction of residues interacting with RNA [My Copy] Bioinformatics (23 April 2009), btp257. by R. V. Spriggs, Y. Murakami, H. Nakamura, S. Jones posted to annotation bioinformatics protein rna software by operon on 2009-05-20 14:50:45 as along with 2 people zwang phoenixzxl
	Performance Evaluation of Protein Sequence Clustering Tools [My Copy] Computational Science – ICCS 2005 (2005), pp. 877-885. by Haifeng Liu, Loo-Nin Teow posted to algorithm bioinformatics clustering homology protein similarity software by operon on 2009-05-08 07:09:30 as
	Confirmation of Organized Modularity in the Yeast Interactome [My Copy] PLoS Biol, Vol. 5, No. 6. (12 June 2007), e153. by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, et al.Michael E. Cusick, Jing-Dong J. Han, Hunter B. Fraser, Frederick P. Roth, Marc Vidal posted to pathway protein systems_biology by operon on 2009-04-30 23:23:40 as along with 4 people mgomes lawraga kintoki winterschlaefer
	Moonlighting proteins-an update [My Copy] Mol. BioSyst., Vol. 5, No. 4. (2009), pp. 345-350. by Constance J. Jeffery posted to evolution protein by operon on 2009-04-29 16:48:01 as along with 1 person idoerg
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to bacteria evolution mutation prokaryote protein selection by operon on 2009-04-14 05:07:36 as along with 35 people and 1 group daveGerrard pmalkus codonusage balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares rpatward lizbiogen jdbowes jasontsai absterga jbhiatt jjray kshundyak zwang friendpine BergmanLab
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to algorithm bioinformatics evolution functional protein structure by operon on 2009-03-31 16:36:42 as along with 8 people and 1 group davidmam jperkins reyez TRHvidsten iaolier dimka gwallau idoerg Orengo Group Journal Picks
	Chemical, physical, and theoretical kinetics of an ultrafast folding protein [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 48. (2 December 2008), pp. 18655-18662. by Jan Kubelka, Eric R. Henry, Troy Cellmer, James Hofrichter, William A. Eaton posted to dynamics folding molecular protein structure by operon on 2008-12-10 03:11:41 as along with 3 people zwang Diego_Prada RamuAnandakrishnan
	SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (26 January 2009) by D. Wilson, R. Pethica, Y. Zhou, et al.C. Talbot, C. Vogel, M. Madera, C. Chothia, J. Gough posted to clustering data_mining database evolution genomics phylogenetics protein by operon on 2008-12-03 19:30:12 as along with 3 people dullhunk guhjy nuin
	Structure-based activity prediction for an enzyme of unknown function [My Copy] Nature (01 July 2007) by Johannes C. Hermann, Ricardo Marti-Arbona, Alexander A. Fedorov, et al.Elena Fedorov, Steven C. Almo, Brian K. Shoichet, Frank M. Raushel posted to annotation genomics protein structure by operon on 2008-11-29 03:31:15 as along with 9 people tny ucbcjbm aheilbut tjimenez daevans zwang pkolb kimicc ivke
	Analysis of the DDE Motif in the Mutator Superfamily [My Copy] Journal of Molecular Evolution, Vol. 67, No. 6. (1 December 2008), pp. 670-681. by Aurélie Hua-Van, Pierre Capy posted to analysis bioinformatics mutation protein transposon by operon on 2008-11-29 03:26:40 as along with 1 person gwallau
	Web based molecular visualization using procedural shaders in X3D [My Copy] In SIGGRAPH '05: ACM SIGGRAPH 2005 Web program (2005) by Feng Liu, Scott Owen, Ying Zhu, Robert Harrison, Irene Weber posted to 3d protein software structure xml by operon on 2008-11-11 14:31:23 as
	Protein CorreLogo: an X3D representation of co-evolving pairs, tertiary structure, ligand binding pockets and protein-protein interactions in protein families [My Copy] In Web3D '07: Proceedings of the twelfth international conference on 3D web technology (2007), pp. 71-80. by Scooter Willis posted to 3d protein software structure xml by operon on 2008-11-11 14:25:35 as
	Evolution of the Protein Universe. Time Scales and Selection : Nature Precedings [My Copy] posted to evolution phylogenetics protein by operon on 2008-11-07 18:40:04 as
	Mapping the protein universe. [My Copy] Science, Vol. 273, No. 5275. (2 August 1996), pp. 595-603. by L. Holm, C. Sander posted to bioinformatics evolution phylogenetics protein by operon on 2008-11-07 18:33:31 as along with 7 people and 2 groups ana barry dimka robert AbnerCYH sim82 laurabailey structural_bioinformatics Bioinformatics
	Pegylated, steptavidin-conjugated quantum dots are effective detection elements for reverse-phase protein microarrays. [My Copy] Bioconjug Chem, Vol. 16, No. 3. (n 2005), pp. 559-566. by D. Geho, N. Lahar, P. Gurnani, et al.M. Huebschman, P. Herrmann, V. Espina, A. Shi, J. Wulfkuhle, H. Garner, E. Petricoin, L. A. Liotta, K. P. Rosenblatt posted to hardware microarray protein quantum by operon on 2008-11-07 16:18:05 as along with 1 person guhjy
	LOCUSTRA: accurate prediction of local protein structure using a two-layer support vector machine approach. [My Copy] Journal of chemical information and modeling, Vol. 48, No. 9. (September 2008), pp. 1903-1908. by O. Zimmermann, U. H. Hansmann posted to ai modelling protein structure svm by operon on 2008-10-30 13:44:35 as
	Sequence divergence, functional constraint, and selection in protein evolution. [My Copy] Annual review of genomics and human genetics, Vol. 4, No. 1. (2003), pp. 213-235. by Justin C. Fay, Chung-I I. Wu posted to doctorate evolution phylogenetics protein selection by operon on 2008-10-30 13:41:22 as along with 3 people and 1 group ramiro2k renewang dmc Durbin group
	Individually addressable parallel peptide synthesis on microchips. [My Copy] Nature biotechnology, Vol. 20, No. 9. (September 2002), pp. 922-926. by J. P. Pellois, X. Zhou, O. Srivannavit, T. Zhou, E. Gulari, X. Gao posted to hardware microarray protein synthesis by operon on 2008-10-19 18:51:59 as along with 1 person Scis0000002
	AL2CO: calculation of positional conservation in a protein sequence alignment. [My Copy] Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 700-712. by J. Pei, N. V. Grishin posted to bioinformatics evolution ortholog paralog protein software by operon on 2008-10-15 12:58:44 as along with 2 people natstreet kaarsinogen
	The correlation of protein hydropathy with the base composition of coding sequences [My Copy] Gene, Vol. 238, No. 1. (30 September 1999), pp. 3-14. by Giuseppe D'Onofrio, Kamel Jabbari, Hector Musto, Giorgio Bernardi posted to master protein by operon on 2008-03-09 23:22:49 as along with 1 person nagendranow
	The hydrophobic moment detects periodicity in protein hydrophobicity. [My Copy] Proc Natl Acad Sci U S A, Vol. 81, No. 1. (January 1984), pp. 140-144. by D. Eisenberg, R. M. Weiss, T. C. Terwilliger posted to genomics master protein by operon on 2008-03-08 23:04:41 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Protein Evolution - Google Book Search [My Copy] posted to evolution master protein reduction by operon on 2008-02-14 15:40:09 as
	Multipolar representation of protein structure [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Apostol Gramada, Philip Bourne posted to protein structure by operon on 2008-02-07 16:20:59 as
	Molecular Crowding Inhibits Intramolecular Breathing Motions in Proteins [My Copy] Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 529-546. by Lee Makowski, Diane J. Rodi, Suneeta Mandava, David D. Minh, David B. Gore, Robert F. Fischetti posted to dynamics molecular protein structure by operon on 2008-01-17 14:17:44 as along with 1 person choonpeng
	Augura computational pipeline for whole genome microbial surface protein prediction and classification [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2819-2820. by Billion, A., Ghai, et al. R., Chakraborty, T., Hain, T. posted to bioinformatics genomics pathogenics prokaryote protein by operon on 2007-11-11 03:44:11 as
	Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters [My Copy] Nucl. Acids Res. (16 October 2007), gkm720. by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C. Mueller posted to promoter structure bioinformatics genomics prokaryote protein by operon on 2007-10-21 17:46:07 as along with 3 people and 1 group jjray dpollard maximilianh EisenLab
	Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 22. (28 October 1997), pp. 11929-11934. by D. Fischer, D. Eisenberg posted to modelling molecule protein structure by operon on 2007-09-03 09:19:54 as
	Large-scale protein structure modeling of the Saccharomyces cerevisiae genome [My Copy] PNAS, Vol. 95, No. 23. (10 November 1998), pp. 13597-13602. by Roberto Sanchez, Andrej Sali posted to modelling molecule protein structure by operon on 2007-09-03 09:14:12 as along with 3 people granujilla vavi ffranca

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evolution	931
master	794
transposon	527
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graphs	1

operon's protein [57 articles] Export

operon's tags