operon's software [173 articles] Export

Recent papers added to operon's library classified by the tag software. You can also see everyone's software.

	The gputools package enables GPU computing in R. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp608. by Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng posted to statistics software r gpgpu by operon on 2009-11-03 15:14:09 as along with 5 people hughitt1 BlackPhoenix shigepong neils druvus
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing. [My Copy] Bioinformatics (Oxford, England) (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to software sequencing genomics bioinformatics assembly by operon on 2009-10-31 00:48:49 as along with 3 people heliopais n00c druvus
	NGSView: an extensible open source editor for next-generation sequencing data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp611. by Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub posted to software sequencing genomics by operon on 2009-10-31 00:46:52 as along with 3 people heliopais n00c druvus
	SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. [My Copy] Molecular biology and evolution (23 October 2009), msp259. by Manolo Gouy, Stéphane Guindon, Olivier Gascuel posted to software bioinformatics by operon on 2009-10-31 00:45:48 as along with 1 person druvus
	An almost linear time algorithm for a general haplotype solution on tree pedigrees with no recombination and its extensions. [My Copy] Journal of bioinformatics and computational biology, Vol. 7, No. 3. (June 2009), pp. 521-545. by Xin Li, Jing Li posted to software pedigree haplotype genetics by operon on 2009-10-26 20:09:03 as along with 1 person Ayest
	TCS: a computer program to estimate gene genealogies. [My Copy] Molecular ecology, Vol. 9, No. 10. (October 2000), pp. 1657-1659. by M. Clement, D. Posada, K. A. Crandall posted to software population haplotype genetics bioinformatics by operon on 2009-10-26 20:07:41 as along with 2 people renewang echinotrix
	ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun [My Copy] PLoS Comput Biol, Vol. 1, No. 4. (23 September 2005), e43. by Ruiqiang Li, Jia Ye, Songgang Li, et al.Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane K. Wong, Jun Wang posted to transposon software repeat bioinformatics annotation by operon on 2009-10-26 19:11:13 as along with 3 people natstreet timflutre yoanjacquemin
	Analyzing biological network parameters with CentiScaPe [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2857-2859. by Giovanni Scardoni, Michele Petterlini, Carlo Laudanna posted to software network bioinformatics by operon on 2009-10-26 18:14:46 as along with 5 people ess30 colmryan kshameer dolchan phoenixzxl
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to software sequencing bioinformatics by operon on 2009-10-26 18:14:25 as along with 18 people and 1 group chvlyl kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot n00c rschulz druvus Journal picks
	Exploratory visual analysis of conserved domains on multiple sequence alignments. [My Copy] BMC bioinformatics, Vol. 10 Suppl 11, No. Suppl 11. (2009), S7. by T. J. Jankun-Kelly, Andrew D. Lindeman, Susan M. Bridges posted to visualization software evolution bioinformatics alignment by operon on 2009-10-26 18:14:07 as along with 2 people and 1 group sillitoe kshameer Orengo Group Journal Picks
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted to software genomics bioinformatics by operon on 2009-10-25 05:46:47 as along with 24 people and 3 groups idonaldson kshameer guhjy druvus n00c dnewburger djkt mmartin sobolevnrm jfr psique cisevol GeeSharpMinor neils dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley baker-group BergmanLab Bioinformatics
	Significant speedup of database searches with HMMs by search space reduction with PSSM family models. [My Copy] Bioinformatics (Oxford, England) (14 October 2009), btp593. by Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz posted to software hmms database_search database data_mining data bioinformatics by operon on 2009-10-20 17:51:27 as along with 2 people kshameer druvus
	BioWarehouse: a bioinformatics database warehouse toolkit [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 170. by Thomas Lee, Yannick Pouliot, Valerie Wagner, et al.Priyanka Gupta, David S. Calvert, Jessica Tenenbaum, Peter Karp posted to software database by operon on 2009-10-03 23:31:06 as along with 5 people druvus ptrobajo eweaver mircea Simplicity
	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to software snp methods by operon on 2009-09-27 16:52:32 as along with 7 people jasontsai jsatkosk daforerog djkt nuin n00c druvus
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to software method bioinformatics assembly by operon on 2009-09-27 16:52:09 as along with 7 people and 1 group dswan fishtank polivares n00c torfinnnome druvus natstreet BergmanLab
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to software bioinformatics 454 by operon on 2009-09-27 15:46:54 as along with 33 people hpaces heliopais imaginatio daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences [My Copy] Nucl. Acids Res., Vol. 37, No. 11. (1 June 2009), pp. e78-e78. by Yujun Han, James M. Burnette, Susan R. Wessler posted to transposons software selection phylogenetics mutation evolution bioinformatics by operon on 2009-09-27 14:50:34 as
	EPoS: a modular software framework for phylogenetic analysis [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2399-2400. by Thasso Griebel, Malte Brinkmeyer, Sebastian Bocker posted to software phylogenetics evolution bioinformatics by operon on 2009-09-18 18:10:37 as along with 2 people druvus nuin
	RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (12 November 2008), 478. by James Hane, Richard Oliver posted to software repeats mutation bioinformatics by operon on 2009-09-18 17:55:54 as along with 2 people nlapalu jamselem
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to structure software similarity search protein homology algorithm by operon on 2009-09-01 11:25:08 as along with 7 people maria_hauser newton1234 joseolucha mijam reyez pjcite granujilla
	An approach of orthology detection from homologous sequences under minimum evolution [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (1 October 2008), e110. by Kyung M. Kim, Samsun Sung, Gustavo Caetano-Anolles, Jae Y. Han, Heebal Kim posted to software selection phylogenetics method genomics evolution bioinformatics by operon on 2009-08-27 15:26:33 as along with 2 people Neeperando barriot
	Darwinian and demographic forces affecting human protein coding genes [My Copy] Genome Research, Vol. 19, No. 5. (1 May 2009), pp. 838-849. by Rasmus Nielsen, Melissa J. Hubisz, Ines Hellmann, et al.Dara Torgerson, Aida M. Andrés, Anders Albrechtsen, Ryan Gutenkunst, Mark D. Adams, Michele Cargill, Adam Boyko, Amit Indap, Carlos D. Bustamante, Andrew G. Clark posted to software selection phylogenetics method genomics evolution bioinformatics by operon on 2009-08-27 15:26:04 as along with 3 people daveGerrard djkt psique
	Signals of recent positive selection in a worldwide sample of human populations [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 826-837. by Joseph K. Pickrell, Graham Coop, John Novembre, et al.Sridhar Kudaravalli, Jun Z. Li, Devin Absher, Balaji S. Srinivasan, Gregory S. Barsh, Richard M. Myers, Marcus W. Feldman, Jonathan K. Pritchard posted to software selection phylogenetics method genomics evolution bioinformatics by operon on 2009-08-27 15:25:58 as along with 7 people jandot daforerog djkt ilyashl jbhiatt MarkFiers shikin
	Workflow based framework for life science informatics [My Copy] Computational Biology and Chemistry, Vol. 31, No. 5-6. (October 2007), pp. 305-319. by Abhishek Tiwari, Arvind K. T. Sekhar posted to software method bioinformatics by operon on 2009-08-27 15:25:42 as along with 10 people and 1 group abhishek_tiwari pekrau andrewclegg egonw Thaverkamp druvus zufar nicklynch guhjy moborg Orengo Group Journal Picks
	The difficulty of avoiding false positives in genome scans for natural selection [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 922-933. by Swapan Mallick, Sante Gnerre, Paul Muller, David Reich posted to software selection phylogenetics method genomics evolution bioinformatics by operon on 2009-08-27 15:25:12 as along with 4 people dakelley gjuggler djkt jbhiatt
	Choosing BLAST options for better detection of orthologs as reciprocal best hits [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 319-324. by Gabriel Moreno-Hagelsieb, Kristen Latimer posted to software ortholog method bioinformatics by operon on 2009-08-27 15:24:32 as along with 10 people treangen druvus natstreet cdeane guhjy cjeans winterschlaefer renatomilani mclarenv cerca
	WeGAS: A Web-Based Microbial Genome Annotation System [My Copy] Bioscience, Biotechnology, and Biochemistry, Vol. 73, No. 1. (2009), pp. 213-216. by Daesang Lee, Hwajung Seo, Chankyu Park, Kiejung Park posted to software genomics bioinformatics annotation by operon on 2009-08-24 05:05:31 as along with 1 person druvus
	Metrics for phylogenetic networks I: generalizations of the Robinson-Foulds metric. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 6, No. 1. (r 2009), pp. 46-61. by Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente posted to software phylogenetics network method algorithm by operon on 2009-08-24 00:17:27 as
	Transposable element annotation of the rice genome. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 2. (22 January 2004), pp. 155-160. by Nikoleta Juretic, Thomas E. Bureau, Richard M. Bruskiewich posted to transposon software genomics bioinformatics annotation by operon on 2009-08-21 00:10:14 as along with 3 people michaelbarton urgi xwbcn
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualization software genomics bioinformatics assembly by operon on 2009-08-16 00:59:23 as along with 24 people and 2 groups tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	MUST: A system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi [My Copy] Gene, Vol. 436, No. 1-2. (01 May 2009), pp. 1-7. by Yong Chen, Fengfeng Zhou, Guojun Li, Ying Xu posted to transposon software mite method bioinformatics by operon on 2009-08-12 09:32:01 as
	PubMed-EX: a web browser extension to enhance PubMed search with text mining features [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3031-3032. by Richard T. Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang posted to data_mining literature software by operon on 2009-08-10 18:50:57 as along with 15 people and 2 groups inesdesantiago dullhunk artaban421 lh49 biblio24 Zephyrus henk-cul sebastien_vigneau thegoose thegoose3 Gaetan guhjy lmichan sjcockell druvus BergmanLab dbmi-nlp
	DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions [My Copy] Nucl. Acids Res., Vol. 36, No. 12. (1 July 2008), pp. 3978-3992. by Mu Gao, Jeffrey Skolnick posted to bioinformatics functional interaction prediction software by operon on 2009-08-10 18:22:11 as along with 5 people yoonk aramesh2 aalibes reyez suffer3
	TEclass--a tool for automated classification of unknown eukaryotic transposable elements [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1329-1330. by Gyorgy Abrusan, Norbert Grundmann, Luc Demester, Wojciech Makalowski posted to bioinformatics evolution phylogenetics software transposon by operon on 2009-08-10 00:18:54 as along with 3 people gwallau timflutre natstreet
	Maximum likelihood genome assembly. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1101-1116. by Paul Medvedev, Michael Brudno posted to algorithm assembly bioinformatics genomics software by operon on 2009-08-02 01:52:40 as along with 7 people dakelley nuin walshtp djkt n00c natstreet druvus
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to algorithm alignment assembly bioinformatics genomics software by operon on 2009-07-28 15:08:23 as along with 25 people and 6 groups agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. [My Copy] Nature protocols, Vol. 4, No. 1. (18 December 2009), pp. 44-57. by Da Wei a. . W. Huang, Brad T. Sherman, Richard A. Lempicki posted to bioinformatics database genomics software by operon on 2009-07-27 18:43:05 as along with 15 people and 2 groups rschulz jperkins tonamswish VGreiff jfr Stew bertelsen Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	ResBoost: characterizing and predicting catalytic residues in enzymes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (27 June 2009), 197. by Ron Alterovitz, Aaron Arvey, Sriram Sankararaman, Carolina Dallett, Yoav Freund, Kimmen Sjolander posted to annotation bioinformatics enzymes functional method protein software structure by operon on 2009-07-03 09:25:28 as along with 2 people and 1 group vpenelle sillitoe Orengo Group Journal Picks
	Metagenome Annotation Using a Distributed Grid of Undergraduate Students [My Copy] PLoS Biol, Vol. 6, No. 11. (25 November 2008), e296. by Pascal Hingamp, Céline Brochier, Emmanuel Talla, Daniel Gautheret, Denis Thieffry, Carl Herrmann posted to annotation database metagenomics software by operon on 2009-07-02 19:48:59 as along with 17 people and 3 groups daforerog azazello Stew JustinCrocker nuin jmeppley xingxu guhjy nitiniitk dbikard dchughes druvus neils djkt ptrobajo dullhunk treangen Bioinformatics - CRUK Centre de Recherches Interdisciplinaires iSEEM
	PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2286-2288. by Nicolas Lartillot, Thomas Lepage, Samuel Blanquart posted to evolution phylogenetics software by operon on 2009-07-02 19:30:07 as along with 6 people and 1 group nesnidal djkt leemond31 nuin grahamc phoenixzxl iSEEM
	OrthoClusterDB: an online platform for synteny blocks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 June 2009), 192. by Man P. Ng, Ismael Vergara, Christian Frech, et al.Qingkang Chen, Xinghuo Zeng, Jian Pei, Nansheng Chen posted to database evolution ortholog software by operon on 2009-07-02 19:29:53 as along with 5 people and 2 groups cdsouthan natstreet druvus nuin cisevol BergmanLab Journal picks
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to bioinformatics genomics software visualization by operon on 2009-07-02 18:53:38 as along with 27 people and 2 groups darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard neils BergmanLab Journal picks
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to assembly bioinformatics genomics method software by operon on 2009-06-30 23:56:45 as along with 16 people and 2 groups n00c robsyme dakelley acn druvus nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer jwhitney iris42 DeNovoAssembly-SIMR Mycology
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to assembly bioinformatics genomics method software by operon on 2009-06-30 23:56:41 as along with 25 people and 2 groups seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai farhat AlexBateman chrisamiller nuin n00c natstreet sandfire druvus BergmanLab Journal picks
	Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 7. (4 July 2009), pp. 1309-1315. by Wei Qu, Shin-ichi Hashimoto, Shinichi Morishita posted to assembly bioinformatics genomics method software by operon on 2009-06-30 23:56:35 as along with 7 people druvus n00c megraw nlapalu dakelley djkt natstreet
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly bioinformatics genomics method software by operon on 2009-06-30 23:56:26 as along with 36 people and 3 groups azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to assembly bioinformatics sequencing software by operon on 2009-06-30 23:55:39 as along with 15 people and 4 groups n00c GeeSharpMinor pachorip druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly bioinformatics genomics sequencing software by operon on 2009-06-30 23:55:22 as along with 23 people and 2 groups ramonvidal orzenil pachorip GustavoLacerda jonilaserson polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly bioinformatics genomics method software by operon on 2009-06-30 23:55:03 as along with 22 people and 1 group n00c carlk jmanning2k APRegier pachorip jonilaserson thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	jModelTest: Phylogenetic Model Averaging [My Copy] Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1253-1256. by David Posada posted to bioinformatics method model phylogenetics software by operon on 2009-06-30 23:43:57 as along with 4 people Garamonfok BioNica druvus aprasad

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evolution	810
master	795
transposon	463
phylogenetics	416
genomics	386
selection	237
reduction	220
bioinformatics	210
mutation	206
software	173
mycoplasma	98
doctorate	87
prokaryote	73
drosophila	65
retroelement	61
arthropod	59
protein	52
structure	50
algorithm	42
method	40
genometrics	38
dna	35
horizontal_transfer	35
ortholog	33
bacteria	31
database	31
immunology	31
pathogenics	31
annotation	30
repeats	30
symbiosis	30
codon_bias	29
rearrangements	28
genetics	26
statistics	26
analysis	25
biotechnology	23
expression	23
sequencing	23
clustering	22
molecular	20
classification	19
gene	19
comparative	18
transcription	18
assembly	17
insect	16
similarity	16
bayes	15
biophysics	15
social	15
systems_biology	15
data_mining	14
microarray	14
population	14
cell	13
molecular_clock	13
ontology	13
biodiversity	12
chromosome	12
computational	12
hardware	12
proteomics	12
search	12
ai	11
alignment	11
eukaryotic	11
human	11
science	11
functional	10
homology	10
transcriptome	10
dynamics	9
literature	9
metagenomics	9
modelling	9
network	9
recombination	9
regulation	9
rna	9
simulation	9
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patterns	6
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data	5
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pseudogene	5
repair	5
review	5
sex	5
snp	5
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chemistry	4
coalescence	4
drug_discovery	4
fluorescence	4
interaction	4
methylation	4
model	4
motif	4
pathway	4
pharmacogenomics	4
programming	4
quantitative	4
strand	4
virus	4
alu	3
biochemistry	3
biotech	3
cladistics	3
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firmicute	3
fret	3
genome	3
go	3
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hmm	3
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mcite	3
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physics	3
promoter	3
proteome	3
python	3
quantum	3
r	3
repeat	3
selectionism	3
tandem	3
text_mining	3
vaccine	3
web	3
2d	2
454	2
biology	2
circadian	2
design	2
divergence_times	2
docking	2
energy	2
epigenomics	2
est	2
exon	2
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folding	2
fuelcell	2
genomic	2
haplotype	2
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adaptive_evolution	1
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key	1
large-scale	1
laser	1
ligand	1
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maximum-likelihood	1
mcmc	1
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misc	1
molecular_evolution	1
motif_discovery	1
nlp	1
nmr	1
noncoding_regions	1
paper_ideas	1
parsimony	1
parsing	1
pedigree	1
phylogenetic_footprint	1
phytoplasma	1
plasticity	1
probability_distribution	1
psychology	1
receptor	1
replication	1
research	1
retraction	1
revision_control	1
sage	1
sensor	1
signal	1
spectroscopy	1
spot	1
stm	1
stress	1
subversion	1
symbiont	1
taxonomy	1
thermodynamics	1
tools	1
transcription_factors	1
transposons	1
tree_topology	1
tree_visualization	1
vertebrate	1

operon's software [173 articles] Export

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