operon's watchlist [more than 800 articles] Export

Recent papers matching operon's watchlist criteria

	A measure of centrality based on network efficiency [My Copy] New J. Phys., Vol. 9, No. 188. (2007) by V. Latora, M. Marchiori posted to sna by orzenil on 2009-11-24 18:24:19 as along with 1 person tanyabw
	Method to find community structures based on information centrality. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 70, No. 5 Pt 2. (November 2004) by Santo Fortunato, Vito Latora, Massimo Marchiori posted to sna by orzenil on 2009-11-24 18:20:43 as
	Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 23. (1 December 2009), pp. 7537-7541. by Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin, et al.Justine R. Hall, Martin Hartmann, Emily B. Hollister, Ryan A. Lesniewski, Brian B. Oakley, Donovan H. Parks, Courtney J. Robinson, Jason W. Sahl, Blaz Stres, Gerhard G. Thallinger, David J. Van Horn, Carolyn F. Weber posted to software metagenomics-pipeline comparative-metagenomics community-genomics by jmeppley on 2009-11-24 16:06:31 as
	Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 555. by Diana Bellin, Alberto Ferrarini, Antonio Chimento, et al.Olaf Kaiser, Natasha Levenkova, Pascal Bouffard, Massimo Delledonne posted to next_generation microarray by druvus on 2009-11-24 14:47:49 as
	The Gene Ontology in 2010: extensions and refinements [My Copy] Nucl. Acids Res. (17 November 2009), gkp1018. by The Gene Ontology Consortium posted to ontology gene by druvus on 2009-11-24 14:46:12 as along with 1 person and 1 group dullhunk Journal picks
	Ensembl genomes: Extending ensembl across the taxonomic space [My Copy] Nucl. Acids Res. (1 November 2009), gkp871. by P. J. Kersey, D. Lawson, E. Birney, et al.P. S. Derwent, M. Haimel, J. Herrero, S. Keenan, A. Kerhornou, G. Koscielny, A. Kahari, R. J. Kinsella, E. Kulesha, U. Maheswari, K. Megy, M. Nuhn, G. Proctor, D. Staines, F. Valentin, A. J. Vilella, A. Yates posted to genome ensembl by druvus on 2009-11-24 14:45:36 as along with 1 person and 1 group dullhunk Journal picks
	Access denied? [My Copy] Nature, Vol. 462, No. 7271. (18 November 2009), pp. 252-252. posted to datasharing by druvus on 2009-11-24 14:44:21 as along with 1 person and 1 group dullhunk Journal picks
	Sharing data [My Copy] Nature Cell Biology, Vol. 11, No. 11. (01 November 2009), pp. 1273-1273. posted to datasharing by druvus on 2009-11-24 14:43:18 as along with 3 people dullhunk gthorisson reyez
	Methodology capture: discriminating between the "best" and the rest of community practice [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (01 September 2008), 359. by James Eales, John Pinney, Robert Stevens, David Robertson posted to community_intelligence by druvus on 2009-11-24 14:40:30 as along with 8 people and 1 group lilith dullhunk fisherp guhjy gendlerk craigecht reyez lptolik 8_01
	Real time PCR detection of <i>Piscirickettsia salmonis</i> from formalin-fixed paraffin-embedded tissues [My Copy] Journal of Fish Diseases, Vol. 31, No. 10. (October 2008), pp. 747-753. by S. Karatas, J. Mikalsen, T. M. Steinum, T. Taksdal, M. Bordevik, D. J. Colquhoun posted to piscirickettsia fish by druvus on 2009-11-24 13:16:37 as
	Agar culture of <i>Piscirickettsia salmonis</i>, a serious pathogen of farmed salmonid and marine fish [My Copy] FEMS Microbiology Letters, Vol. 278, No. 1. (January 2008), pp. 43-47. by Jarle Mikalsen, Olaf Skjærvik, Jannicke Wiik-Nielsen, Marit A. Wasmuth, Duncan J. Colquhoun posted to piscirickettsia fish by druvus on 2009-11-24 13:16:27 as along with 1 person mlfederico
	Fangia hongkongensis gen. nov., sp. nov., a novel gammaproteobacterium of the order Thiotrichales isolated from coastal seawater of Hong Kong [My Copy] Int J Syst Evol Microbiol, Vol. 57, No. 11. (1 November 2007), pp. 2665-2669. by Ken W. K. Lau, Jianping Ren, Ming-Chiu Fung, et al.Patrick C. Y. Woo, Kwok-Yung Yuen, Kelvin K. M. Chan, Pei-Yuan Qian, Po-Keung Wong, Madeline Wu posted to fangia by druvus on 2009-11-24 12:51:03 as
	On emergence, agency, and organization [My Copy] Biology and Philosophy, Vol. 21, No. 4. (1 September 2006), pp. 501-521. by Stuart Kauffman, Philip Clayton posted to philosophy evolution complexity by timflutre on 2009-11-23 22:20:52 as along with 1 person sabinaleo
	The Concept of Information in Biology [My Copy] Philosophy of Science, Vol. 67, No. 2. (2000), pp. 177-194. by John M. Smith posted to philosophy information evo_devo by timflutre on 2009-11-23 21:56:43 as
	Top-down Causation Without Top-down Causes [My Copy] Biology and Philosophy, Vol. 22, No. 4. (1 September 2007), pp. 547-563. by Carl Craver, William Bechtel posted to philosophy by timflutre on 2009-11-23 21:49:38 as along with 2 people and 1 group qwermish cirdan Philosophy-Metaphysics
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to software ngs by orzenil on 2009-11-23 21:41:15 as along with 4 people and 1 group guhjy mkiyer natstreet druvus Chinnaiyan Lab
	Statistical Phylogeography [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 40, No. 1. (2009), pp. 593-612. by Lacey L. Knowles posted to statistical_phylogeography phylogeography by lizbiogen on 2009-11-23 13:48:03 as
	Delimiting Species without Monophyletic Gene Trees [My Copy] Syst Biol, Vol. 56, No. 6. (1 December 2007), pp. 887-895. by Lacey L. Knowles, Bryan C. Carstens posted to species_trees monophyly gene_trees gene_tree by lizbiogen on 2009-11-23 13:41:33 as along with 1 person and 1 group stajich Mycology
	Molecular evolution in bacterial endosymbionts of fungi [My Copy] Mol Biol Evol (18 November 2009), msp280. by Dean M. Castillo, Teresa E. Pawlowska posted to evolution endosymbiont by druvus on 2009-11-23 13:02:16 as
	Bayesian inference of species trees from multilocus data [My Copy] Mol Biol Evol (20 November 2009), msp274. by Joseph Heled, Alexei J. Drummond posted to species mvla bayesian by druvus on 2009-11-23 13:02:00 as
	mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets [My Copy] Bioinformatics (17 November 2009), btp649. by William Ritchie, Stephane Flamant, John E. J. Rasko posted to tf expression correlation by druvus on 2009-11-23 13:01:28 as along with 3 people and 1 group natstreet heliopais frohike microRNA
	LegumeTFDB: An integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors [My Copy] Bioinformatics (17 November 2009), btp645. by Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son P. Tran posted to tf database by druvus on 2009-11-23 13:01:07 as
	DASMiner: discovering and integrating data from DAS sources [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 109. by Diogo Veiga, Helena Deus, Caner Akdemir, Ana T. Vasconcelos, Jonas Almeida posted to software das by druvus on 2009-11-23 13:00:16 as along with 2 people and 1 group kshameer cisevol BergmanLab
	BioGPS: an extensible and customizable portal for organizing and querying gene annotation resources [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R130. by Chunlei Wu, Camilo Orozco, Jason Boyer, et al.Marc Leglise, James Goodale, Serge Batalov, Christopher Hodge, James Haase, Jeff Janes, Jon Huss, Andrew Su posted to database annotation by druvus on 2009-11-23 13:00:00 as along with 4 people thomaskelder natstreet daforerog neils
	Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (14 November 2009), 264. by Yesim Soyer, Renato Orsi, Lorraine R. Rivera, Qi Sun, Martin Wiedmann posted to salmonella genome evolution by druvus on 2009-11-23 12:59:39 as
	Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: Characterization of XIP subfamily of aquaporins from evolutionary perspective [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009), 134. by Anjali Gupta, Ramasubbu Sankararamakrishnan posted to populus gene family by druvus on 2009-11-23 12:59:11 as
	Genome scale transcriptome analysis of shoot organogenesis in Populus [My Copy] BMC Plant Biology, Vol. 9, No. 1. (2009), 132. by Yanghuan Bao, Palitha Dharmawardhana, Todd Mockler, Steven Strauss posted to populus expression by druvus on 2009-11-23 12:58:52 as along with 1 person natstreet
	AQUA: Automated quality improvement for multiple sequence alignments [My Copy] Bioinformatics (19 November 2009), btp651. by Jean Muller, Christopher J. Creevey, Julie D. Thompson, Detlev Arendt, Peer Bork posted to software alignment by druvus on 2009-11-23 12:57:35 as along with 1 person natstreet
	Searching for SNPs with cloud computing [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R134. by Ben Langmead, Michael Schatz, Jimmy Lin, Mihai Pop, Steven Salzberg posted to snp sequencing cloud by druvus on 2009-11-23 12:57:17 as along with 8 people owenlancaster natstreet Julien_Fayolle kshameer jamesmorris jandot neils n00c
	VIBE 2.0: Visual Integration for Bayesian Evaluation [My Copy] Bioinformatics (17 November 2009), btp639. by Nathaniel Beagley, Kelly G. Stratton, Bobbie-Jo M. Webb-Robertson posted to visualisation bayesian by druvus on 2009-11-23 12:51:35 as
	Genome reannotation of Escherichia coli CFT073 with new insights into virulence [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 552. by Chengwei Luo, Gang Q. Hu, Huaiqiu Zhu posted to genome ecoli annotation by druvus on 2009-11-23 12:40:54 as
	Heterotachy and long-branch attraction in phylogenetics. [My Copy] BMC evolutionary biology, Vol. 5 (2005) by Hervé Philippe, Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Frédéric Delsuc posted to statistics phylogeny modeling evolution by timflutre on 2009-11-20 15:26:12 as along with 2 people renewang rsandie
	A comparative view of the evolution of grasses under domestication [My Copy] New Phytologist, Vol. 183, No. 2. (2009), pp. 273-290. by Sylvain Glémin, Thomas Bataillon posted to plant grasses genetics evolution domestication by timflutre on 2009-11-19 21:11:52 as
	Jena: implementing the semantic web recommendations [My Copy] In WWW Alt. '04: Proceedings of the 13th international World Wide Web conference on Alternate track papers \& posters (2004), pp. 74-83. by Jeremy J. Carroll, Ian Dickinson, Chris Dollin, Dave Reynolds, Andy Seaborne, Kevin Wilkinson posted to software rdf owl jena apis by allysonlister on 2009-11-19 11:30:22 as along with 7 people and 2 groups beanformer hazen mercutio palakorn freecia msn jorgevillaverde Drexel-HCI Drexel-eVoting
	Quantifying the local reliability of a sequence alignment. [My Copy] Protein engineering, Vol. 9, No. 2. (February 1996), pp. 127-132. by H. T. Mevissen, M. Vingron posted to bioinformatics alignment by timflutre on 2009-11-18 16:29:05 as
	Annotation and merging of SBML models with semanticSBML [My Copy] Bioinformatics (17 November 2009), btp642. by Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister posted to software sbml model-annotation by allysonlister on 2009-11-18 16:04:34 as along with 2 people and 1 group dagmar dullhunk Journal picks
	Testing the neutral theory of molecular evolution [My Copy] (July 2005) by Patrick Forber posted to tutorial molecular modeling evolution by timflutre on 2009-11-18 15:32:52 as
	Name that gene! [My Copy] Nat Struct Mol Biol, Vol. 14, No. 8. (01 August 2007), pp. 681-681. posted to gene editorial by allysonlister on 2009-11-18 11:24:46 as along with 2 people beete mtaschuk
	Transposable element distribution, abundance and role in genome size variation in the genus Oryza [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (29 August 2007), 152. by Andrea Zuccolo, Aswathy Sebastian, Jayson Talag, et al.Yeisoo Yu, HyeRan Kim, Kristi Collura, Dave Kudrna, Rod Wing posted to transposable_element rice plant genomics by timflutre on 2009-11-18 09:53:42 as along with 1 person aprasad
	Repeated big bangs and the expanding universe: Directionality in plant genome size evolution [My Copy] Plant Science, Vol. 174, No. 6. (June 2008), pp. 557-562. by J. Hawkins, C. Grover, J. Wendel posted to transposable_element review plant genomics by timflutre on 2009-11-18 09:50:48 as
	Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae [My Copy] Cytogenetic and Genome Research, Vol. 110, No. 1-4. (2005), pp. 229-241. by M. A. Grandbastien, C. Audeon, E. Bonnivard, et al.J. M. Casacuberta, B. Chalhoub, A. P. P. Costa, Q. H. Le, D. Melayah, M. Petit, C. Poncet, S. M. Tam, M. A. Van Sluys, C. Mhiri posted to transposable_element stress retrotransposon regulation plant by timflutre on 2009-11-18 09:48:31 as along with 2 people dandaman ArtemPankin
	The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae [My Copy] Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 85-98. by Martin A. Lysak, Marcus A. Koch, Jeremy M. Beaulieu, Armin Meister, Ilia J. Leitch posted to transposable_element plant genomics brassica by timflutre on 2009-11-18 09:40:53 as along with 1 person and 1 group ArtemPankin Khavkin's lab
	KEGG Atlas mapping for global analysis of metabolic pathways. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008), gkn282. by Shujiro Okuda, Takuji Yamada, Masami Hamajima, et al.Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa posted to pathways genomic annotation by Thaverkamp on 2009-11-18 09:26:50 as along with 6 people chica epigenetics michaelbarton reyez renatomilani guhjy
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to genomics annotation by Thaverkamp on 2009-11-18 09:16:00 as along with 30 people sjcockell JeremyZucker jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to sequencing bioinformatics algorithm by timflutre on 2009-11-17 20:53:33 as along with 23 people and 2 groups urgi Jporci pst epigenetics molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Article-Level Metrics and the Evolution of Scientific Impact [My Copy] PLoS Biol, Vol. 7, No. 11. (17 November 2009), e1000242. by Cameron Neylon, Shirley Wu posted to opinion impact-factor article-level-metrics by allysonlister on 2009-11-17 10:18:26 as along with 23 people and 3 groups drmarkandersen gjuggler sfalsharif MariaChiaraP hughesro gloriaoriggi Lbenmoha koczy gthorisson tnhh tharris ppgardne stajich archimedian niallhaslam dartar fgibson dullhunk kevinemamy neils jobadge AJCann CameronNeylon Parenting 2.0 Journal picks Mycology
	Using Clouds for Metagenomics: A Case Study [My Copy] by Jared Wilkening posted to sc09 ngs next_generation nex cloud bioinformatics by agbiotec on 2009-11-16 19:48:31 as
	Pathway knowledge base: An integrated pathway resource using BioPAX [My Copy] Applied Ontology, Vol. 3, No. 4. (1 January 2008), pp. 235-245. by Nikesh Kotecha, Kyle Bruck, William Lu, Nigam Shah posted to semantic-data-integration rdf oracle data-integration biopax by allysonlister on 2009-11-16 11:25:27 as along with 2 people fgibson kshameer
	Integrating BioPAX pathway knowledge with SBML models [My Copy] IET Systems Biology, Vol. 3, No. 5. (2009), pp. 317-328. by O. Ruebenacker, I. I. Moraru, J. C. Schaff, M. L. Blinov posted to systems-biology semantic-data-integration sbml data-integration biopax by allysonlister on 2009-11-16 11:19:06 as
	Dynamic Programming Alignment Accuracy [My Copy] Journal of Computational Biology, Vol. 5, No. 3. (January 1998), pp. 493-504. by I. A. N. Holmes, Richard Durbin posted to modeling bioinformatics alignment algorithm by timflutre on 2009-11-16 11:17:04 as

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evolution	913
master	794
transposon	515
phylogenetics	421
genomics	392
selection	239
bioinformatics	223
reduction	220
mutation	209
software	179
mycoplasma	98
doctorate	87
prokaryote	73
annotation	70
drosophila	65
retroelement	61
arthropod	60
structure	56
protein	54
algorithm	43
genometrics	40
method	40
horizontal_transfer	36
dna	35
ortholog	33
bacteria	31
database	31
immunology	31
pathogenics	31
repeats	30
symbiosis	30
codon_bias	29
genetics	28
rearrangements	28
statistics	28
sequencing	27
analysis	25
biotechnology	23
expression	23
clustering	22
molecular	20
classification	19
gene	19
social	19
transcription	19
comparative	18
assembly	17
insect	16
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systems_biology	16
bayes	15
biophysics	15
data_mining	14
microarray	14
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ontology	14
population	14
biodiversity	13
cell	13
science	13
simulation	13
ai	12
chromosome	12
computational	12
hardware	12
proteomics	12
search	12
alignment	11
eukaryotic	11
functional	11
human	11
homology	10
literature	10
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transcriptome	10
dynamics	9
metagenomics	9
network	9
recombination	9
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cancer	8
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enzymes	7
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review	5
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strand	4
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web	4
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biology	3
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go	3
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mcite	3
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proteome	3
python	3
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r	3
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tandem	3
text_mining	3
transposons	3
vaccine	3
2d	2
454	2
circadian	2
design	2
divergence_times	2
energy	2
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est	2
exon	2
experimental	2
folding	2
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metabolic	2
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parallel	2
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hydrogen	1
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parsimony	1
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pedigree	1
phylogenetic_footprint	1
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protein_function	1
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tools	1
transcription_factors	1
tree_topology	1
tree_visualization	1
vertebrate	1
web_service	1

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