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Targeted enrichment strategies for next-generation plant biology

by: Richard Cronn, Brian J. Knaus, Aaron Liston, Peter J. Maughan, Matthew Parks, John V. Syring, Joshua Udall
American Journal of Botany, Vol. 99, No. 2. (01 February 2012), pp. 291-311, doi:10.3732/ajb.1100356  Key: citeulike:10321762

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Abstract

• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation sequencing platforms. Factors like large genome size, extensive variation in the proportion of organellar DNA in total DNA, polyploidy, and gene number/redundancy contribute to these challenges, and they demand flexible targeted enrichment strategies to achieve the desired goals.


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