oteri's library 506 articles Export

Ordered by to_read.

	Essential role of cytoplasmic sequences for cell-surface sorting of the lectin-like oxidized LDL receptor-1 (LOX-1). [My Copy] Journal of molecular and cellular cardiology, Vol. 39, No. 3. (September 2005), pp. 553-561. by M. Chen, T. Sawamura posted to lox-1 by oteri on 2008-12-02 09:20:47 as along with 1 group LOX-1 Receptor
	Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy. [My Copy] J Med Chem, Vol. 47, No. 1. (1 January 2004), pp. 45-55. by J. A. Erickson, M. Jalaie, D. H. Robertson, R. A. Lewis, M. Vieth posted to docking by oteri on 2008-12-02 09:02:52 as along with 6 people and 3 groups BragilMassoud apaydin yongzhao sangeetha daevans kazemi Bioinformatics TSRI_MGL insilicodrug
	Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models [My Copy] Journal of Computational Chemistry, Vol. 13, No. 8. (1992), pp. 952-962. by Shuichi Miyamoto, Peter A. Kollman posted to molecular_dynamics by oteri on 2009-11-19 13:15:15 as along with 8 people Lombardo_7 choonpeng A_Coletta_Thesis jwagoner tji softsimu ashaytan robertvacha
	Design and modular parallel synthesis of a MCR derived α-helix mimetic protein–protein interaction inhibitor scaffold [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 16, No. 6. (15 March 2006), pp. 1740-1743. by Walfrido Antuch, Sanjay Menon, Quin-Zene Chen, et al.Yingchun Lu, Sukumar Sakamuri, Barbara Beck, Vesna Schauer-Vukašinović, Seema Agarwal, Sibylle Hess, Alexander Dömling posted to lox-1 inibitori by oteri on 2009-11-02 16:52:28 as
	Analysis [My Copy] posted to molecular_dynamics by oteri on 2009-11-01 23:11:13 as
	A guest molecule–host cavity fitting algorithm to mine PDB for small molecule targets [My Copy] Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1764, No. 8. (August 2006), pp. 1320-1324. by William C. Byrem, Stephen C. Armstead, Shunji Kobayashi, Roderic G. Eckenhoff, David M. Eckmann posted to docking by oteri on 2009-11-01 12:43:24 as
	The role of LOX-1, a novel lectin-like receptor for oxidized low density lipoprotein, in atherosclerosis. [My Copy] The Canadian journal of cardiology, Vol. 20 Suppl B (August 2004) by Jawahar L. Mehta posted to lox-1 by oteri on 2009-10-21 19:05:24 as
	Functional refolding of a recombinant C-type lectin-like domain containing intramolecular disulfide bonds. [My Copy] Protein expression and purification, Vol. 52, No. 2. (April 2007), pp. 415-421. by Ravinder S. Vohra, Jane E. Murphy, John H. Walker, Shervanthi Homer-Vanniasinkam, Sreenivasan Ponnambalam posted to lox-1 by oteri on 2009-10-21 19:05:11 as
	Biosynthesis and post-translational processing of lectin-like oxidized low density lipoprotein receptor-1 (LOX-1). N-linked glycosylation affects cell-surface expression and ligand binding. [My Copy] The Journal of biological chemistry, Vol. 275, No. 9. (3 March 2000), pp. 6573-6579. by H. Kataoka, N. Kume, S. Miyamoto, et al.M. Minami, T. Murase, T. Sawamura, T. Masaki, N. Hashimoto, T. Kita posted to lox-1 by oteri on 2009-10-21 19:04:16 as
	Intrinsic disorder and coiled-coil formation in prostate apoptosis response factor 4. [My Copy] The FEBS journal, Vol. 276, No. 14. (July 2009), pp. 3710-3728. by David S. Libich, Martin Schwalbe, Sachin Kate, et al.Hariprasad Venugopal, Jolyon K. Claridge, Patrick J. Edwards, Kaushik Dutta, Steven M. Pascal posted to neck_domain lox-1 coiled_coil by oteri on 2009-10-21 19:03:53 as
	Analysis of dynamics trajectories of DNA and DNA - drug complexes [My Copy] Comput. Appl. Biosci., Vol. 5, No. 4. (1 October 1989), pp. 271-278. by Andrzej Galat posted to dna by oteri on 2009-10-21 11:56:13 as
	PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2743-2744. by T. Aleksiev, R. Potestio, F. Pontiggia, S. Cozzini, C. Micheletti posted to domain_movement docking by oteri on 2009-10-21 11:44:43 as along with 1 person and 1 group apaydin Structural Biology Group TorVergata
	Synthesis and Biological Evaluation of a 5-6-5 Imidazole-Phenyl-Thiazole Based α-Helix Mimetic [My Copy] Organic Letters, Vol. 11, No. 1. (1 January 2009), pp. 25-28. by Christopher G. Cummings, Nathan T. Ross, William P. Katt, Andrew D. Hamilton posted to lox-1 inibitori by oteri on 2009-10-19 17:42:41 as along with 1 person and 1 group higueruelo LOX-1 Receptor
	From Peptides to Non-Peptide Alpha-Helix Inducers and Mimetics13 [My Copy] European Journal of Organic Chemistry, Vol. 2009, No. 30. (2009), pp. 5112-5128. by V. Haridas posted to peptide by oteri on 2009-10-19 15:39:03 as along with 1 group LOX-1 Receptor
	Design, Synthesis, and Evaluation of an α-Helix Mimetic Library Targeting Protein−Protein Interactions [My Copy] Journal of the American Chemical Society, Vol. 131, No. 15. (22 April 2009), pp. 5564-5572. by Alex Shaginian, Landon R. Whitby, Sukwon Hong, et al.Inkyu Hwang, Bilal Farooqi, Mark Searcey, Jiandong Chen, Peter K. Vogt, Dale L. Boger posted to lox-1 initial_screening by oteri on 2009-10-19 15:17:17 as along with 1 person and 1 group higueruelo LOX-1 Receptor
	Synthesis of new modified truncated peptides and inhibition of glycogen phosphorylase. [My Copy] Journal of peptide science : an official publication of the European Peptide Society, Vol. 15, No. 6. (June 2009), pp. 442-450. by Stephanie S. Schweiker, Wendy A. Loughlin, Christopher L. Brown, Gregory K. Pierens posted to peptide docking by oteri on 2009-10-06 16:15:43 as along with 1 group Structural Biology Group TorVergata
	Chapter 4 Accelerated Molecular Dynamics Methods: Introduction and Recent Developments [My Copy] In Annual Reports in Computational Chemistry Volume 5, Vol. 5 (2009), pp. 79-98. by Danny Perez, Blas P. Uberuaga, Yunsic Shim, Jacques G. Amar, Arthur F. Voter posted to figata by oteri on 2009-10-06 15:27:37 as along with 1 person and 1 group anuragsethi Structural Biology Group TorVergata
	Computation of Conformational Coupling in Allosteric Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted to docking by oteri on 2009-09-27 23:42:36 as along with 6 people and 1 group sobolevnrm klexa boris_aguilar bmduggan barry zwang McCammon
	Molecular dynamic investigation of the interaction of supported affinity ligands with monoclonal antibodies. [My Copy] Biotechnology progress, Vol. 24, No. 3. (n 2008), pp. 527-539. by Laura Zamolo, Valentina Busini, Davide Moiani, Davide Moscatelli, Carlo Cavallotti posted to docking by oteri on 2009-09-27 23:41:04 as
	Selected-fit versus induced-fit protein binding: Kinetic differences and mutational analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 75, No. 1. (April 2009), pp. 104-110. by Thomas R. Weikl, Carola von Deuster posted to docking by oteri on 2009-09-27 23:38:58 as along with 1 person pablocarb
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to docking by oteri on 2009-09-27 23:36:05 as along with 8 people and 2 groups bmduggan xdeupi okapi aqeel raik ruvido barry zwang structural_bioinformatics McCammon
	Molecular dynamics simulations of NAD+-induced domain closure in horse liver alcohol dehydrogenase. [My Copy] Biophysical journal, Vol. 91, No. 5. (1 September 2006), pp. 1823-1831. by Steven Hayward, Akio Kitao posted to domain_movement docking by oteri on 2009-09-27 23:33:47 as
	Database of ligand-induced domain movements in enzymes. [My Copy] BMC structural biology, Vol. 9 (06 March 2009), 13. by Guoying Qi, Steven Hayward posted to domain_movement docking by oteri on 2009-09-27 23:28:04 as along with 2 people and 1 group sschurer kshameer structural_bioinformatics
	DNA nanomachines and their functional evolution [My Copy] Chem. Commun., No. 19. (2009), pp. 2625-2636. by Huajie Liu, Dongsheng Liu posted to dna_nanostructures by oteri on 2009-09-27 17:59:47 as
	Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by A. Xayaphoummine, T. Bucher, H. Isambert posted to dna by oteri on 2009-09-26 12:25:07 as along with 3 people ellarond austin Kiarostami
	Balancing Solvation and Intramolecular Interactions: Toward a Consistent Generalized Born Force Field [My Copy] Journal of the American Chemical Society, Vol. 128, No. 11. (1 March 2006), pp. 3728-3736. by Jianhan Chen, Wonpil Im, Charles L. Brooks posted to implicit_solvent by oteri on 2009-09-22 22:44:16 as along with 5 people ckmyo yxue dfgreen onufriev bilab
	Polarizable force fields [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 2. (1 April 2001), pp. 236-242. by T. Halgren posted to figata by oteri on 2009-09-22 22:36:40 as along with 2 people flbarroso tovrstra
	Computer-Aided Lead Optimization: Improved Small-Molecule Inhibitor of the Zinc Endopeptidase of Botulinum Neurotoxin Serotype A [My Copy] PLoS ONE, Vol. 2, No. 8. (22 August 2007), e761. by Jing Tang, Jewn G. Park, Charles B. Millard, James J. Schmidt, Yuan-Ping Pang posted to znua docking by oteri on 2009-09-17 18:40:07 as along with 2 groups znu Structural Biology Group TorVergata
	Free energy calculations of glycosaminoglycan-protein interactions. [My Copy] Glycobiology, Vol. 19, No. 10. (October 2009), pp. 1103-1115. by Neha S. Gandhi, Ricardo L. Mancera posted to docking by oteri on 2009-09-15 23:17:03 as
	Ligand mapping on protein surfaces by the 3D-RISM theory: toward computational fragment-based drug design. [My Copy] Journal of the American Chemical Society, Vol. 131, No. 34. (2 September 2009), pp. 12430-12440. by Takashi Imai, Koji Oda, Andriy Kovalenko, Fumio Hirata, Akinori Kidera posted to docking by oteri on 2009-09-15 23:16:31 as along with 1 person somak
	Fragment-based approach to drug lead discovery: overview and advances in various techniques. [My Copy] Drugs in R&D, Vol. 9, No. 4. (2008), pp. 217-227. by Daniela Fattori, Antonella Squarcia, Sandra Bartoli posted to docking by oteri on 2009-09-15 23:16:01 as
	Locating missing water molecules in protein cavities by the three-dimensional reference interaction site model theory of molecular solvation. [My Copy] Proteins, Vol. 66, No. 4. (1 March 2007), pp. 804-813. by Takashi Imai, Ryusuke Hiraoka, Andriy Kovalenko, Fumio Hirata posted to docking by oteri on 2009-09-15 23:15:31 as along with 2 people and 1 group sobolevnrm softsimu baker-group
	Receptor-based 3D QSAR analysis of estrogen receptor ligands--merging the accuracy of receptor-based alignments with the computational efficiency of ligand-based methods. [My Copy] Journal of computer-aided molecular design, Vol. 14, No. 6. (August 2000), pp. 559-572. by W. Sippl posted to docking by oteri on 2009-09-15 23:15:05 as
	Computational fragment-based binding site identification by ligand competitive saturation. [My Copy] PLoS computational biology, Vol. 5, No. 7. (10 July 2009), e1000435. by Olgun Guvench, Alexander D. MacKerell posted to docking_prog docking by oteri on 2009-09-15 23:08:22 as along with 5 people and 2 groups NickFurnham higueruelo TRHvidsten barry riffraff structural_bioinformatics McCammon
	RedMD - Reduced molecular dynamics package [My Copy] Journal of Computational Chemistry, Vol. 30, No. 14. (2009), pp. 2364-2373. by Adam Górecki, Marcin Szypowski, Maciej D&lstrok;ugosz, Joanna Trylska posted to programmi molecular_dynamics by oteri on 2009-09-15 22:51:51 as along with 4 people and 1 group anuragsethi flbarroso jmccammon shwu McCammon
	Extracting the Causality of Correlated Motions from Molecular Dynamics Simulations [My Copy] Vol. 97, No. 6. (16 September 2009), pp. 1747-1755. by Hiqmet Kamberaj, Arjan van der Vaart posted to molecular_dynamics by oteri on 2009-09-15 22:01:34 as along with 1 person agrossfield
	Changes in Electrostatic Surface Potential of Na+/K+-ATPase Cytoplasmic Headpiece Induced by Cytoplasmic Ligand(s) Binding [My Copy] Vol. 97, No. 6. (16 September 2009), pp. 1756-1764. by Martin Kubala, Lenka Grycova, Zdenek Lansky, et al.Petr Sklenovsky, Marika Janovska, Michal Otyepka, Jan Teisinger posted to modelling electrostatic by oteri on 2009-09-15 22:01:08 as
	Polymer properties of polythymine as revealed by translational diffusion. [My Copy] Biophysical journal, Vol. 93, No. 4. (15 August 2007), pp. 1224-1234. by Sören Doose, Hannes Barsch, Markus Sauer posted to dna by oteri on 2009-09-15 16:13:36 as
	Orientational Correlation Function and Persistence Lengths of Flexible Polyelectrolytes [My Copy] Macromolecules, Vol. 35, No. 4. (1 February 2002), pp. 1437-1445. by Magnus Ullner, Clifford E. Woodward posted to dna by oteri on 2009-09-15 16:12:29 as
	Supercoiling and denaturation of DNA loops. [My Copy] Physical review letters, Vol. 100, No. 23. (13 June 2008) by T. B. Liverpool, S. A. Harris, C. A. Laughton posted to dna by oteri on 2009-09-14 16:36:03 as along with 1 group Structural Biology Group TorVergata
	DNA sequence-dependent deformability deduced from proteinâDNA crystal complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 19. (15 September 1998), pp. 11163-11168. by Wilma K. Olson, Andrey A. Gorin, Xiang-Jun Lu, Lynette M. Hock, Victor B. Zhurkin posted to programmi dna by oteri on 2009-09-14 16:20:30 as along with 1 person hagechouchin443
	An efficient method for finding the minimum of a function of several variables without calculating derivatives [My Copy] The Computer Journal, Vol. 7, No. 2. (1 February 1964), pp. 155-162. by M. J. D. Powell posted to programmi algorithm by oteri on 2009-09-14 15:39:32 as along with 3 people and 1 group pmendes yocchiman vandoormaal Structural Biology Group TorVergata
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to programmi by oteri on 2009-09-14 15:35:24 as along with 37 people and 9 groups Geknitics pekrau Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus jago kshameer operon svozil Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Conformational analysis of nucleic acids revisited: Curves+ [My Copy] Nucl. Acids Res. (22 July 2009), gkp608. by R. Lavery, M. Moakher, J. H. Maddocks, D. Petkeviciute, K. Zakrzewska posted to dna by oteri on 2009-09-14 15:29:06 as along with 1 group Structural Biology Group TorVergata
	Theory and applications of the generalized born solvation model in macromolecular simulations [My Copy] Biopolymers, Vol. 56, No. 4. (4 December 2000), pp. 275-291. by Vickie Tsui, David A. Case posted to implicit_solvent by oteri on 2009-09-14 11:43:01 as along with 5 people Vadikus flbarroso Lombardo_7 ttjoseph RamuAnandakrishnan
	Scaffold-hopping potential of fragment-based de novo design: the chances and limits of variation. [My Copy] Combinatorial chemistry & high throughput screening, Vol. 12, No. 4. (May 2009), pp. 383-396. by Bjoern A. Krueger, Axel Dietrich, Karl-Heinz H. Baringhaus, Gisbert Schneider posted to docking by oteri on 2009-09-14 10:46:06 as along with 2 people ubcg08l reyez
	Application and limitations of X-ray crystallographic data in structure-based ligand and drug design. [My Copy] Angewandte Chemie (International ed. in English), Vol. 42, No. 24. (23 June 2003), pp. 2718-2736. by Andrew M. Davis, Simon J. Teague, Gerard J. Kleywegt posted to docking by oteri on 2009-09-14 10:45:23 as along with 3 people and 2 groups apaydin sangeetha thanatos Bioinformatics insilicodrug
	Fragment shuffling: an automated workflow for three-dimensional fragment-based ligand design. [My Copy] Journal of chemical information and modeling, Vol. 49, No. 5. (May 2009), pp. 1211-1222. by Britta Nisius, Ulrich Rester posted to docking by oteri on 2009-09-14 10:45:13 as along with 2 people reyez sschurer
	DOCK 6: combining techniques to model RNA-small molecule complexes. [My Copy] RNA (New York, N.Y.), Vol. 15, No. 6. (15 June 2009), pp. 1219-1230. by P. Therese Lang, Scott R. Brozell, Sudipto Mukherjee, et al.Eric F. Pettersen, Elaine C. Meng, Veena Thomas, Robert C. Rizzo, David A. Case, Thomas L. James, Irwin D. Kuntz posted to docking_prog docking by oteri on 2009-09-14 10:44:30 as along with 1 person simone
	Study on the inhibitory mechanism and binding mode of the hydroxycoumarin compound NSC158393 to HIV-1 integrase by molecular modeling. [My Copy] Biopolymers, Vol. 91, No. 9. (September 2009), pp. 700-709. by Ming Liu, Xiao Jing J. Cong, Ping Li, Jian Jun J. Tan, Wei Zu Z. Chen, Cun Xin X. Wang posted to docking by oteri on 2009-09-14 10:43:56 as along with 1 person carlosjavierna

Note: You may cite this page as: http://www.citeulike.org/user/oteri/order/to_read

Result page: 1 2 3 4 5 6 7 8 9 10 Next

docking	146
lox-1	75
dna	46
coiled_coil	40
docking_prog	38
cepa	32
programmi	24
drug_design	20
dna_nanostructures	19
neck_domain	16
topo	15
cluster_analysis	12
figata	11
adducts	8
algorithm	8
molecular_dynamics	7
implicit_solvent	6
znua	5
methods	4
protein-peptide_dock	4
structure_prediction	4
circular_dichroism	3
cpt	3
domain_movement	3
ambertools	2
artificial_intelligence	2
chiancone	2
coarse_grained	2
guidelines	2
inibitori	2
modelling	2
mordor	2
namd	2
nmr_and_md	2
peptide	2
protein-protein_dock	2
ricerche	2
user_manual	2
analysis_prog	1
carrier	1
database	1
electrostatic	1
electrostatics	1
fleksy	1
initial_screening	1
langevin	1
lipid	1
nanocage	1
papvir	1
pedc	1
protein-protein_docking	1
qsar	1
rna	1
server	1

oteri's library 506 articles Export

oteri's tags