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	Free energy requirement for domain movement of an enzyme. [My Copy] The Journal of biological chemistry, Vol. 275, No. 25. (23 June 2000), pp. 18939-18945. by J. Ishijima, T. Nakai, S. Kawaguchi, K. Hirotsu, S. Kuramitsu posted to enzyme-promis-paper enzyme dynamics by pablocarb on 2009-09-22 10:04:37 as along with 1 person nickolay
	Methyl side-chain dynamics prediction based on protein structure [My Copy] Bioinformatics (30 July 2009), btp463. by Pablo Carbonell, Antonio Del Sol posted to structure prediction methyl dynamics by pablocarb on 2009-08-26 13:40:15 as
	Protein Conformational Flexibility from Structure-Free Analysis of NMR Dipolar Couplings: Quantitative and Absolute Determination of Backbone Motion in Ubiquitin13 [My Copy] Angewandte Chemie International Edition, Vol. 48, No. 23. (2009), pp. 4154-4157. by Loïc Salmon, Guillaume Bouvignies, Phineus Markwick, et al.Nils Lakomek, Scott Showalter, Da-Wei Li, Korvin Walter, Christian Griesinger, Rafael Brüschweiler, Martin Blackledge posted to backbone dynamics by pablocarb on 2009-06-25 08:15:30 as along with 1 person anna_yershova
	Structural biology: Protein dynamics from disorder [My Copy] Nature, Vol. 459, No. 7250. (24 June 2009), pp. 1063-1064. by Joel R. Tolman posted to dynamics by pablocarb on 2009-06-25 08:12:30 as along with 5 people skywalkerus02 anna_yershova niallhaslam reyez yse
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted to dynamics nmr by pablocarb on 2009-06-07 18:34:57 as along with 4 people and 3 groups anuragsethi skywalkerus02 barry sobolevnrm structural_bioinformatics McCammon baker-group
	Increased rigidity of eglin c at acidic pH: evidence from NMR spin relaxation and MD simulations. [My Copy] Biochemistry, Vol. 42, No. 47. (2 December 2003), pp. 13856-13868. by H. Hu, M. W. Clarkson, J. Hermans, A. L. Lee posted to dynamics md by pablocarb on 2009-05-24 17:24:15 as along with 1 person lna
	Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 21. (15 October 1996), pp. 11504-11509. by R. W. Kriwacki, L. Hengst, L. Tennant, S. I. Reed, P. E. Wright posted to enzyme-promis-paper disorder dynamics promiscuity by pablocarb on 2009-04-30 16:21:42 as along with 1 person allmensch
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to dynamics by pablocarb on 2009-04-22 15:48:11 as along with 22 people and 3 groups skywalkerus02 paulymer dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	Sending signals dynamically. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 198-203. by Robert G. Smock, Lila M. Gierasch posted to dynamics by pablocarb on 2009-04-22 15:47:08 as along with 7 people and 1 group guhjy kjell chica biomcgary sobolevnrm renatomilani hsekiguc baker-group
	Trapping Moving Targets with Small Molecules [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 213-215. by Gregory M. Lee, Charles S. Craik posted to dynamics by pablocarb on 2009-04-22 15:46:14 as along with 6 people and 3 groups guhjy nanonan sobolevnrm barry Fortran friendpine baker-group structural_bioinformatics McCammon
	Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the AMBER99SB Force Field [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 3. (1 May 2007), pp. 961-975. by Scott A. Showalter, Rafael Bruschweiler posted to dynamics md nmr prediction side-chain by pablocarb on 2009-04-19 16:06:22 as along with 3 people bmduggan allmensch loison
	Toward Quantitative Interpretation of Methyl Side-Chain Dynamics from NMR by Molecular Dynamics Simulations [My Copy] J. Am. Chem. Soc., Vol. 129, No. 46. (21 November 2007), pp. 14146-14147. by S. A. Showalter, E. Johnson, M. Rance, R. Bruschweiler posted to dynamics md methyl prediction side-chain by pablocarb on 2009-04-19 15:41:02 as along with 1 person and 1 group sobolevnrm baker-group
	Pin1 modulates the structure and function of human RNA polymerase II [My Copy] Genes & Development, Vol. 17, No. 22. (15 November 2003), pp. 2765-2776. by Yu-Xin Xu, Yutaka Hirose, Xiao Z. Zhou, Kun P. Lu, James L. Manley posted to allostery dynamics by pablocarb on 2009-04-13 19:22:24 as
	Allosteric regulation and catalysis emerge via a common route [My Copy] Nature Chemical Biology, Vol. 4, No. 8. (18 July 2008), pp. 474-482. by Nina M. Goodey, Stephen J. Benkovic posted to enzyme-promis-paper allostery catalysis dynamics promiscuity by pablocarb on 2009-02-04 10:23:27 as along with 4 people mittinatten Diego_Prada barry paulschlesinger
	Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein. [My Copy] J Am Chem Soc, Vol. 130, No. 28. (16 July 2008), pp. 8931-8939. by Anne Dhulesia, Joerg Gsponer, Michele Vendruscolo posted to dynamics examples md by pablocarb on 2009-01-17 17:02:06 as
	Re-evaluation of the model-free analysis of fast internal motion in proteins using NMR relaxation. [My Copy] J Phys Chem B, Vol. 112, No. 38. (25 September 2008), pp. 12095-12103. by Kendra K. Frederick, Kim A. Sharp, Nicholas Warischalk, Joshua A. Wand posted to dynamics examples nmr side-chain by pablocarb on 2009-01-17 17:02:06 as
	Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data. [My Copy] J Am Chem Soc, Vol. 128, No. 38. (27 September 2006), pp. 12354-12355. by Bernd Reif, Yi Xue, Vipin Agarwal, et al.Maria S. Pavlova, Maggy Hologne, Anne Diehl, Yaroslav E. Ryabov, Nikolai R. Skrynnikov posted to dynamics nmr side-chain by pablocarb on 2009-01-17 17:02:06 as
	Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed. [My Copy] J Am Chem Soc, Vol. 130, No. 49. (10 December 2008), pp. 16611-16621. by Vipin Agarwal, Yi Xue, Bernd Reif, Nikolai R. Skrynnikov posted to dynamics nmr side-chain by pablocarb on 2009-01-17 17:02:05 as
	Protein Side-Chain Dynamics and Residual Conformational Entropy. [My Copy] J Am Chem Soc (23 December 2008) by Nikola Trbovic, Jae-Hyun Cho, Robert Abel, Richard A. Friesner, Mark Rance, Arthur G. Palmer posted to dynamics nmr by pablocarb on 2009-01-17 17:02:05 as
	Ligand configurational entropy and protein binding. [My Copy] PNAS, Vol. 104, No. 5. (22 January 2007), pp. 1534-1539. by Chia-En A. Chang, Wei Chen, Michael K. Gilson posted to dynamics entropy by pablocarb on 2009-01-17 17:02:05 as
	Solution NMR in structural genomics. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 5. (October 2006), pp. 611-617. by Adelinda Yee, Aleksandras Gutmanas, Cheryl H. Arrowsmith posted to dynamics nmr by pablocarb on 2009-01-17 17:02:05 as
	Protein dynamics from NMR. [My Copy] Nat Struct Biol, Vol. 5 Suppl (July 1998), pp. 513-517. by L. E. Kay posted to dynamics nmr by pablocarb on 2009-01-17 17:02:05 as
	Conformational entropy in molecular recognition by proteins. [My Copy] Nature, Vol. 448, No. 7151. (19 July 2007), pp. 325-329. by Kendra K. Frederick, Michael Marlow, Kathleen Valentine, Joshua A. Wand posted to dynamics entropy by pablocarb on 2009-01-17 17:02:05 as
	Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding. [My Copy] J Mol Biol, Vol. 263, No. 2. (25 October 1996), pp. 369-382. by D. Yang, L. E. Kay posted to dynamics entropy by pablocarb on 2009-01-17 17:02:05 as
	Backbone dynamics in an intramolecular prolylpeptide-SH3 complex from the diphtheria toxin repressor, DtxR. [My Copy] J Mol Biol, Vol. 374, No. 4. (7 December 2007), pp. 977-992. by Nilakshee Bhattacharya, Myunggi Yi, Huan-Xiang Zhou, Timothy M. Logan posted to dynamics examples by pablocarb on 2009-01-17 17:02:05 as
	NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding. [My Copy] Acc Chem Res, Vol. 34, No. 5. (May 2001), pp. 379-388. by M. J. Stone posted to dynamics by pablocarb on 2009-01-17 17:02:05 as
	Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison of NMR spin relaxation measurements and molecular dynamics simulations. [My Copy] J Mol Biol, Vol. 246, No. 2. (17 February 1995), pp. 356-365. by P. E. Smith, R. C. van Schaik, T. Szyperski, K. Wüthrich, W. F. van Gunsteren posted to dynamics examples by pablocarb on 2009-01-17 17:02:05 as
	Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15330-15334. by Gerhard Hummer, Friedrich Schotte, Philip A. Anfinrud posted to dynamics md by pablocarb on 2009-01-17 17:02:05 as
	Flexibility and conformational entropy in protein-protein binding. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 683-693. by R. Grünberg, M. Nilges, J. Leckner posted to dynamics entropy flexibility by pablocarb on 2009-01-17 17:02:05 as
	On side-chain conformational entropy of proteins. [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e168. by Jinfeng Zhang, Jun S. Liu posted to dynamics energy entropy side-chain by pablocarb on 2009-01-17 17:02:05 as
	Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution. [My Copy] Chem Rev, Vol. 106, No. 5. (May 2006), pp. 1672-1699. by Tatyana I. Igumenova, Kendra K. Frederick, Joshua A. Wand posted to dynamics nmr by pablocarb on 2009-01-17 17:02:05 as
	Dynamic personalities of proteins. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to allostery dynamics nmr by pablocarb on 2009-01-17 17:02:05 as
	Relating side-chain mobility in proteins to rotameric transitions: insights from molecular dynamics simulations and NMR. [My Copy] J Biomol NMR, Vol. 32, No. 2. (June 2005), pp. 151-162. by Hao Hu, Jan Hermans, Andrew L. Lee posted to dynamics md nmr rotamers by pablocarb on 2009-01-17 17:02:05 as
	Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences. [My Copy] Chem Rev, Vol. 106, No. 5. (May 2006), pp. 1624-1671. by Virginia A. Jarymowycz, Martin J. Stone posted to backbone database dynamics by pablocarb on 2009-01-17 17:02:05 as
	Toward quantitative interpretation of methyl side-chain dynamics from NMR by molecular dynamics simulations. [My Copy] J Am Chem Soc, Vol. 129, No. 46. (21 November 2007), pp. 14146-14147. by Scott A. Showalter, Eric Johnson, Mark Rance, Rafael Brüschweiler posted to dynamics md prediction by pablocarb on 2009-01-17 17:02:05 as
	Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation. [My Copy] Biophys J, Vol. 90, No. 10. (15 May 2006), pp. 3382-3388. by Dengming Ming, Rafael Brüschweiler posted to dynamics prediction by pablocarb on 2009-01-17 17:02:05 as
	Monitoring aromatic picosecond to nanosecond dynamics in proteins via 13C relaxation: expanding perturbation mapping of the rigidifying core mutation, V54A, in eglin c. [My Copy] Biochemistry, Vol. 47, No. 17. (29 April 2008), pp. 4876-4886. by Joshua A. Boyer, Andrew L. Lee posted to dynamics examples by pablocarb on 2009-01-17 17:02:05 as
	The origin of protein sidechain order parameter distributions. [My Copy] J Am Chem Soc, Vol. 126, No. 25. (30 June 2004), pp. 7734-7735. by Robert B. Best, Jane Clarke, Martin Karplus posted to dynamics by pablocarb on 2009-01-17 17:02:05 as
	Contact Model for the Prediction of NMR N-H Order Parameters in Globular Proteins. [My Copy] J Am Chem Soc, Vol. 130, No. 28. (16 July 2008), 9178. by Fengli Zhang, Rafael Brüschweiler posted to dynamics prediction by pablocarb on 2009-01-17 17:02:05 as
	Prediction of methyl-side chain dynamics in proteins. [My Copy] J Biomol NMR, Vol. 29, No. 3. (July 2004), pp. 363-368. by Dengming Ming, Rafael Brüschweiler posted to dynamics methyl prediction by pablocarb on 2009-01-17 17:02:04 as
	Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. [My Copy] J Mol Biol, Vol. 335, No. 4. (23 January 2004), pp. 1105-1115. by Ernesto J. Fuentes, Channing J. Der, Andrew L. Lee posted to allostery dynamics examples by pablocarb on 2009-01-17 17:02:04 as
	Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex. [My Copy] Nat Struct Biol, Vol. 7, No. 1. (January 2000), pp. 72-77. by Andrew Lee, Sandra Kinnear, Joshua A. Wand posted to dynamics entropy examples by pablocarb on 2009-01-17 17:02:04 as
	Propagation of dynamic changes in barnase upon binding of barstar: an NMR and computational study. [My Copy] J Mol Biol, Vol. 367, No. 4. (6 April 2007), pp. 1079-1092. by Anastasia Zhuravleva, Dmitry M. Korzhnev, Svetlana B. Nolde, et al.Lewis E. Kay, Alexander S. Arseniev, Martin Billeter, Vladislav Y. Orekhov posted to allostery dynamics examples by pablocarb on 2009-01-17 17:02:04 as
	Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase. [My Copy] Biochemistry, Vol. 43, No. 2. (20 January 2004), pp. 374-383. by Jason R. Schnell, Jane H. Dyson, Peter E. Wright posted to allostery dynamics example by pablocarb on 2009-01-17 17:02:04 as
	An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs. [My Copy] Biochemistry, Vol. 40, No. 15. (17 April 2001), pp. 4590-4600. by A. P. Loh, N. Pawley, L. K. Nicholson, R. E. Oswald posted to alllostery dynamics examples by pablocarb on 2009-01-17 17:02:04 as
	A simple model of backbone flexibility improves modeling of side-chain conformational variability. [My Copy] J Mol Biol, Vol. 380, No. 4. (18 July 2008), pp. 757-774. by Gregory D. Friedland, Anthony J. Linares, Colin A. Smith, Tanja Kortemme posted to dynamics prediction by pablocarb on 2009-01-17 17:02:04 as
	Protein conformational flexibility prediction using machine learning. [My Copy] J Magn Reson, Vol. 192, No. 1. (May 2008), pp. 37-47. by Oleg Trott, Keri Siggers, Burkhard Rost, 3rd A. Palmer posted to dynamics prediction by pablocarb on 2009-01-17 17:02:04 as
	Relation between native ensembles and experimental structures of proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 29. (18 July 2006), pp. 10901-10906. by Robert B. Best, Kresten Lindorff-Larsen, Mark A. Depristo, Michele Vendruscolo posted to dynamics by pablocarb on 2009-01-17 17:02:04 as
	Molecular simulations of protein dynamics: new windows on mechanisms in biology [My Copy] posted to dynamics molecular by pablocarb on 2009-01-17 17:02:04 as
	Biological Nuclear Magnetic Resonance Thematic Issue - Chemical Reviews (ACS Publications) [My Copy] posted to dynamics nmr by pablocarb on 2009-01-17 17:02:04 as

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enzyme	65
dynamics	59
evolution	54
enzyme-promis-paper	53
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prediction	35
systems-biology	32
interactions	22
protein	21
allostery	19
mutations	18
modularity	18
nmr	17
metabolic	15
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examples	14
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md	7
secondary	7
secondary_structure	7
clustering	7
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metabolic_networks	7
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systems_biology	6
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structural	6
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chemical_fingerprints	4
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software	4
essential	4
metabolic_pathways	4
enzyme_evolution	4
tnf	4
system_biology	3
methyl	3
force-fields	3
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foldx	3
antigen-binding	3
energy-functions	3
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fold	3
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feedback	2
betweenness	2
fuzzy	2
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beta	2
pathways	2
biology	2
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reaction	2
protein_interaction	2
modeling	2
backbone	2
efficiency	2
language	1
admet	1
mrna	1
functional_analysis	1
chimera	1
strands	1
systems_chemistry	1
expression	1
profiling	1
divergent_groups	1
yeast	1
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pharmacology	1
protein_engineering	1
mirna	1
adaptation	1
computational_intelligence	1
paratopes	1
knockout	1
signal	1
fuzzy_logic	1
interaction_network	1
rna	1
flux_balance_analysis	1
native_function	1
catalytic_residues	1
peptide	1
disease	1
cancer	1
visualization	1
wiki	1
orthologous	1
correlation	1
sequence-analysis	1
colocalization	1
robustness	1
storage	1
localization	1
docking	1
evolutionay	1
cell	1
hydrophobicity	1
virotherapy	1
cell_signaling	1
ligand	1
protein_networks	1
hiv-1	1
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mutant	1
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example	1
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ms	1
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