pablocarb's evolution [52 articles] Export

Recent papers added to pablocarb's library classified by the tag evolution. You can also see everyone's evolution.

	The Phylogenetic Extent of Metabolic Enzymes and Pathways [My Copy] Genome Res In Genome Research, Vol. 13, No. 3. (1 March 2003), pp. 422-427. by JosÃ© M. Peregrin-Alvarez, Sophia Tsoka, Christos A. Ouzounis posted to pathway metabolism evolution enzyme by pablocarb on 2009-12-08 13:21:04 as along with 1 person grahamc
	Integrating the Universal Metabolism into a Phylogenetic Analysis [My Copy] Mol Biol Evol In Mol Biol Evol, Vol. 22, No. 1. (1 January 2005), pp. 1-11. by Chomin Cunchillos, Guillaume Lecointre posted to metabolism evolution by pablocarb on 2009-12-07 15:00:22 as along with 1 person bluto
	The conservation and evolutionary modularity of metabolism [My Copy] Genome Biology, Vol. 10, No. 6. (12 June 2009), R63. by Jose P. Alvarez, Chris Sanford, John Parkinson posted to metabolism evolution by pablocarb on 2009-12-07 14:58:05 as along with 10 people and 1 group venancio carlk adampah bdessailly barriot biomcgary michaelbarton Winzer tomhebbron grahamc Orengo Group Journal Picks
	Evolution of Amino Acid Metabolism Inferred through Cladistic Analysis [My Copy] In Journal of Biological Chemistry, Vol. 278, No. 48. (28 November 2003), pp. 47960-47970. by Chomin Cunchillos, Guillaume Lecointre posted to metabolism evolution by pablocarb on 2009-12-07 14:29:32 as
	Structure of deviations from optimality in biological systems [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 106, No. 48. (1 December 2009), pp. 20544-20549. by Alfonso Perez-Escudero, Marta Rivera-Alba, Gonzalo G. de Polavieja posted to system_biology optimization_theory evolution adaptation by pablocarb on 2009-12-02 08:46:17 as along with 2 people sdaehne jjray
	Enzyme (re)design: lessons from natural evolution and computation. [My Copy] Current opinion in chemical biology, Vol. 13, No. 1. (February 2009), pp. 10-18. by John A. Gerlt, Patricia C. Babbitt posted to in-silico evolution enzyme_engineering enzyme by pablocarb on 2009-11-18 13:09:09 as along with 1 person and 1 group qbin1304 Biocatalysis and Biotransformation
	The origin and evolution of modern metabolism [My Copy] The International Journal of Biochemistry & Cell Biology, Vol. 41, No. 2. (February 2009), pp. 285-297. by Gustavo Caetano-Anollés, Liudmila S. Yafremava, Hannah Gee, Derek Caetano-Anollés, Hee S. Kim, Jay E. Mittenthal posted to metabolism evolution enzyme_evolution enzyme by pablocarb on 2009-11-17 13:19:40 as
	Myopic selection of novel information drives evolution [My Copy] Current Opinion in Biotechnology, Vol. 20, No. 4. (21 August 2009), pp. 504-508. by Antoine Danchin posted to synthetic-biology evolution enzyme_evolution enzyme enzy by pablocarb on 2009-11-13 09:57:03 as
	Global extent of horizontal gene transfer [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 11. (13 March 2007), pp. 4489-4494. by In-Geol Choi, Sung-Hou Kim posted to tree_of_life phylogenetic_trees horizontal_gene_transfer evolution by pablocarb on 2009-11-04 11:27:56 as along with 1 person operon
	Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis. [My Copy] EMBO reports, Vol. 4, No. 3. (March 2003), pp. 296-300. by Francisco Barona-Gómez, David A. Hodgson posted to promiscuity isomerase evolution enzyme barrel by pablocarb on 2009-11-03 11:17:29 as
	Natural history as a predictor of protein evolvability [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 10. (1 October 2006), pp. 439-442. by Taryn L. O'Loughlin, Wayne M. Patrick, Ichiro Matsumura posted to evolution enzyme_evolution enzyme by pablocarb on 2009-10-08 14:20:21 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	A Darwinian Process: The Molecular Evolution of Enzymes. [My Copy] Pensamiento: Revista de investigacion en Informacion filosofica, Vol. 64, No. 242. (2008), pp. 771-782. by J. Bertran posted to molecular_evolution evolution enzyme by pablocarb on 2009-10-08 13:35:15 as
	Evolutionary rate in the protein interaction network. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5568. (26 April 2002), pp. 750-752. by Hunter B. Fraser, Aaron E. Hirsh, Lars M. Steinmetz, Curt Scharfe, Marcus W. Feldman posted to protein_interaction protein network interaction_network interaction evolution by pablocarb on 2009-10-06 14:48:32 as along with 11 people daveGerrard mgomes qluo renewang marcio raiyar dragonrez bjorns timflutre tale friendpine
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by Berend Snel, Martijn A. Huynen, Bas E. Dutilh posted to tree-of-life tree reconstruction phylogenetic_reconstruction genome evolution by pablocarb on 2009-10-06 08:40:14 as along with 5 people inquil ssgong knaseanka aprasad dayjm
	A structure-centric view of protein evolution, design, and adaptation. [My Copy] Advances in enzymology and related areas of molecular biology, Vol. 75 (2007) by Eric J. Deeds, Eugene I. Shakhnovich posted to structure protein evolution by pablocarb on 2009-10-04 20:10:24 as
	Molecular paleoscience: systems biology from the past. [My Copy] Advances in enzymology and related areas of molecular biology, Vol. 75 (2007) by Steven A. Benner, Slim O. Sassi, Eric A. Gaucher posted to systems_biology paleogenetics evolution enzyme by pablocarb on 2009-10-04 20:06:07 as along with 1 person sbottani
	Strategies for reliable exploitation of evolutionary concepts in high throughput biology. [My Copy] Evolutionary bioinformatics online, Vol. 4 (2008), pp. 121-137. by Anthony Levasseur, Pierre Pontarotti, Olivier Poch, Julie D. Thompson posted to phylogenetics high_throughput evolution by pablocarb on 2009-09-30 16:03:02 as along with 1 person biomcgary
	DIVERGENT EVOLUTION OF ENZYMATIC FUNCTION: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies [My Copy] Annual Review of Biochemistry, Vol. 70, No. 1. (2001), pp. 209-246. by John A. Gerlt, Patricia C. Babbitt posted to superfamily evolution enzyme divergent_evolution directed_evolution by pablocarb on 2009-09-30 14:55:47 as along with 4 people and 2 groups mittinatten ana tny robert structural_bioinformatics Bioinformatics
	Evolution of Enzymatic Activities in the Enolase Superfamily: l-Fuconate Dehydratase from Xanthomonas campestris†,‡ [My Copy] Biochemistry, Vol. 45, No. 49. (1 December 2006), pp. 14582-14597. by Wen S. Yew, Alexander A. Fedorov, Elena V. Fedorov, et al.John F. Rakus, Richard W. Pierce, Steven C. Almo, John A. Gerlt posted to superfamily scaffold evolution enzyme barrel by pablocarb on 2009-09-30 12:54:01 as
	Catalytic Versatility, Stability, and Evolution of the (βα)8-Barrel Enzyme Fold [My Copy] Chemical Reviews, Vol. 105, No. 11. (1 November 2005), pp. 4038-4055. by Reinhard Sterner, Birte Hocker posted to scaffold evolution enzyme catalytic barrel by pablocarb on 2009-09-30 11:57:28 as along with 1 person dfdong
	The role of quaternary structure in ([small beta]/[small alpha])8-barrel proteins: evolutionary happenstance or a higher level of structure-function relationships? [My Copy] Org. Biomol. Chem., Vol. 7, No. 5. (2009), pp. 833-839. by Sean R. A. Devenish, Juliet A. Gerrard posted to strands scaffold quaternary_structure evolution enzyme beta barrel by pablocarb on 2009-09-29 21:15:53 as
	Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways. [My Copy] J Mol Biol, Vol. 303, No. 4. (3 November 2000), pp. 627-641. by R. R. Copley, P. Bork posted to superfamily scaffold pathway metabolic evolution barrel by pablocarb on 2009-09-23 14:43:06 as along with 3 people and 1 group dfdong tjimenez Einat structural_bioinformatics
	Pathway evolution, structurally speaking. [My Copy] Current opinion in structural biology, Vol. 12, No. 3. (June 2002), pp. 374-382. by Stuart C. Rison, Janet M. Thornton posted to pathway metabolism evolution enzyme by pablocarb on 2009-09-23 14:30:55 as along with 4 people kuhn alexg eweaver bluto
	Evolution of enzymes and pathways for the biosynthesis of cofactors [My Copy] Nat. Prod. Rep., Vol. 24, No. 5. (October 2007), pp. 972-987. by Gemma L. Holliday, Janet M. Thornton, Andree Marquet, et al.Alison G. Smith, Fabrice Rebeille, Ralf Mendel, Heidi L. Schubert, Andrew D. Lawrence, Martin J. Warren posted to pathway evolution enzyme cofactor biosynthesis by pablocarb on 2009-09-23 14:29:05 as along with 3 people ucbcjbm grottenolm gemmalholliday
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to structure network metabolic fold evolution essential by pablocarb on 2009-09-23 13:34:35 as along with 14 people robfsouza michaelbarton venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang phoenixzxl roys
	The Enolase Superfamily: A General Strategy for Enzyme-Catalyzed Abstraction of the α-Protons of Carboxylic Acids† [My Copy] Biochemistry, Vol. 35, No. 51. (1 January 1996), pp. 16489-16501. by Patricia C. Babbitt, Miriam S. Hasson, Joseph E. Wedekind, et al.David R. J. Palmer, William C. Barrett, George H. Reed, Ivan Rayment, Dagmar Ringe, George L. Kenyon, John A. Gerlt posted to evolution enzyme-promis-paper enzyme catalytic by pablocarb on 2009-09-22 09:42:00 as along with 1 person and 1 group ThomasKipper Molecular Enzymetechnology and Biochemistry (AG Siebers)
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to structure network evolution by pablocarb on 2009-09-21 14:31:53 as along with 24 people and 2 groups daveGerrard ucbcjbm mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	Origin and evolution of metabolic pathways [My Copy] Physics of Life Reviews, Vol. 6, No. 1. (March 2009), pp. 23-52. by Renato Fani, Marco Fondi posted to pathways metabolic evolution enzyme by pablocarb on 2009-09-16 18:04:41 as
	New wine from old barrels. [My Copy] Nature structural biology, Vol. 7, No. 3. (March 2000), pp. 171-173. by J. A. Gerlt posted to scaffold promiscuity evolution beta barrel by pablocarb on 2009-09-16 17:35:50 as
	Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity. [My Copy] EMBO reports, Vol. 6, No. 2. (14 February 2005), pp. 134-139. by Jochen Kuper, Catharina Doenges, Matthias Wilmanns posted to scaffold promiscuity evolution enzyme barrel by pablocarb on 2009-09-16 17:04:59 as along with 1 person dfdong
	Directed evolution of a (alpha-beta)8-barrel enzyme to catalyze related reactions in two different metabolic pathways [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 9925-9930. by Catharina Jurgens, Alexander Strom, Dennis Wegener, Stefan Hettwer, Matthias Wilmanns, Reinhard Sterner posted to scaffold promiscuity pathways metabolic evolution enzyme directed_evolution catalysis barrel by pablocarb on 2009-09-16 13:35:46 as along with 1 person msuarezdiez
	Genomes, phylogeny, and evolutionary systems biology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. Suppl 1. (3 May 2005), pp. 6630-6635. by MÃ³nica Medina posted to systems_biology philogeny evolution by pablocarb on 2009-09-16 13:22:41 as along with 3 people and 1 group pengchy karthikram mangtronix Neoscientists
	Underlying principles of natural selection in network evolution: systems biology approach. [My Copy] Evolutionary bioinformatics online, Vol. 3 (2007), pp. 245-262. by Bor-Sen S. Chen, Wei-Sheng S. Wu posted to systems_biology synthetic-biology network evolution by pablocarb on 2009-09-16 13:20:34 as
	Enzyme evolution: Design by necessity [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 606-607. by Gregory A. Petsko posted to secondary_structure evolution enzyme by pablocarb on 2009-09-16 13:12:28 as
	Structural Evidence for Evolution of the beta /alpha Barrel Scaffold by Gene Duplication and Fusion [My Copy] Science, Vol. 289, No. 5484. (1 September 2000), pp. 1546-1550. by Dietmar Lang, Ralf Thoma, Martina Henn-Sax, Reinhard Sterner, Matthias Wilmanns posted to secondary_structure fusion evolution duplication beta_alpha by pablocarb on 2009-09-15 18:30:12 as along with 2 people dfdong echinotrix
	Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288. by Matteo Pellegrini, Edward M. Marcotte, Michael J. Thompson, David Eisenberg, Todd O. Yeates posted to philogeny function evolution by pablocarb on 2009-09-08 12:59:31 as along with 15 people and 1 group calderonv jperkins chica skembel Robinder dragonrez bicko lfriedl balajis opheliav tny ruvido winterschlaefer shung carlk kdl
	A network perspective on the topological importance of enzymes and their phylogenetic conservation. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Wei-chung C. Liu, Wen-hsien H. Lin, Andrew J. Davis, Ferenc Jordán, Hsih-te T. Yang, Ming-jing J. Hwang posted to philogeny evolution enzyme by pablocarb on 2009-09-08 12:53:46 as along with 5 people and 1 group shung renatomilani jiny ptrobajo mdstobbe Bioinformatics
	Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (1 August 2008), e1000142. by Ranyee A. Chiang, Andrej Sali, Patricia C. Babbitt posted to superfamily substrate evolution enzyme conservation by pablocarb on 2009-09-08 12:17:05 as along with 2 people and 1 group ucbcjbm stajich Mycology
	Designed divergent evolution of enzyme function [My Copy] Nature, Vol. 440, No. 7087. (20 April 2006), pp. 1078-1082. by Yasuo Yoshikuni, Thomas E. Ferrin, Jay D. Keasling posted to enzyme-promis-paper function evolution enzyme engineering by pablocarb on 2009-08-26 13:29:26 as along with 5 people and 2 groups ygygod lingchong marcius tny dbikard BioinfoCIPF SGU-CIPF
	The Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1764-1767. by Jason Raymond, Daniel Segre posted to network metabolic evolution by pablocarb on 2009-08-24 14:41:04 as along with 4 people schwartzjmc kentsis kuhn jdiggans
	Highly expressed genes in yeast evolve slowly. [My Copy] Genetics, Vol. 158, No. 2. (1 June 2001), pp. 927-931. by C. Pál, B. Papp, L. D. Hurst posted to evolution enzyme by pablocarb on 2009-08-24 14:11:24 as along with 6 people and 1 group michaelbarton bjorns penka lewbin balicea skumagai Nie
	Questioning our perceptions about evolution of biodegradative enzymes. [My Copy] Current opinion in microbiology, Vol. 12, No. 3. (26 June 2009), pp. 244-251. by Lawrence P. Wackett posted to evolution enzyme by pablocarb on 2009-08-23 17:57:20 as
	Analogous Enzymes: Independent Inventions in Enzyme Evolution [My Copy] Genome Research, Vol. 8, No. 8. (1 August 1998), pp. 779-790. by Michael Y. Galperin, D. Roland Walker, Eugene V. Koonin posted to evolution enzyme by pablocarb on 2009-08-23 17:52:14 as
	Influence of metabolic network structure and function on enzyme evolution. [My Copy] Genome biology, Vol. 7, No. 5. (9 May 2006) by Dennis Vitkup, Peter Kharchenko, Andreas Wagner posted to network metabolic evolution enzyme by pablocarb on 2009-08-23 17:16:10 as along with 6 people daveGerrard michaelbarton chica tny JeremyZucker mdstobbe
	On the Evolution of Biochemical Syntheses. [My Copy] Proc Natl Acad Sci U S A, Vol. 31, No. 6. (June 1945), pp. 153-157. by N. H. Horowitz posted to catalytic enzyme evolution pathway by pablocarb on 2009-07-28 10:40:58 as along with 2 people bluto chaleil
	Catalytic promiscuity and the evolution of new enzymatic activities. [My Copy] Chemistry & biology, Vol. 6, No. 4. (April 1999), pp. 91-105. by P. J. O'Brien, D. Herschlag posted to promiscuity evolution enzyme-promis-paper enzyme catalytic by pablocarb on 2009-07-28 10:36:11 as along with 4 people barmak7282 svandermoten pauldobson betainverse
	A network perspective on the evolution of metabolism by gene duplication. [My Copy] Genome biology, Vol. 8, No. 2. (27 February 2007), R26. by J. J. Díaz-Mejía, E. Pérez-Rueda, L. Segovia posted to enzyme evolution metabolic network by pablocarb on 2009-07-27 15:06:17 as
	Network analysis of metabolic enzyme evolution in Escherichia coli. [My Copy] BMC bioinformatics, Vol. 5 (18 February 2004) by Sara Light, Per Kraulis posted to enzyme evolution promiscuity by pablocarb on 2009-07-27 14:32:06 as along with 8 people and 1 group renatomilani kuhn alexg eweaver tny azuma livingthingdan pekrau livingthing
	Enzyme recruitment in evolution of new function. [My Copy] Annual review of microbiology, Vol. 30 (1976), pp. 409-425. by R. A. Jensen posted to enzyme evolution promiscuity by pablocarb on 2009-07-27 12:53:21 as along with 1 person tny
	How does an enzyme evolved in vitro compare to naturally occurring homologs possessing the targeted function? Tyrosine aminotransferase from aspartate aminotransferase. [My Copy] Journal of molecular biology, Vol. 327, No. 3. (28 March 2003), pp. 593-608. by S. C. Rothman, J. F. Kirsch posted to enzyme-promis-paper engineering enzyme evolution promiscuity protein by pablocarb on 2009-07-22 10:34:23 as

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enzyme	64
dynamics	59
network	53
enzyme-promis-paper	53
evolution	52
promiscuity	50
prediction	35
systems-biology	32
interactions	22
protein	21
allostery	19
modularity	18
mutations	18
nmr	17
function	14
antibodies	14
examples	14
metabolic	14
bioretro	13
barrel	12
in-silico-mutagenesis	12
database	12
scaffold	12
synthetic-biology	12
catalytic	11
proposal	11
hot-spots	10
directed_evolution	10
catalysis	10
conservation	10
entropy	9
pathway	9
drug	9
tree-of-life	9
structure	9
toxicity	9
svm	8
binding	8
signatures	8
domain	8
engineering	8
in-silico	8
metabolism	7
specificity	7
energy	7
md	7
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secondary	7
secondary_structure	7
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bioinformatics	6
control	6
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structural	6
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qsar	4
essential	4
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software	4
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methyl	3
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biology	2
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feedback	2
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substrate	2
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enzymes	2
betweenness	2
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alllostery	2
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efficiency	2
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promiscuiy	1
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fusion	1
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essay	1

pablocarb's evolution [52 articles] Export

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