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	Applications of genome-scale metabolic reconstructions [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Matthew A. Oberhardt, Bernhard O. Palsson, Jason A. Papin posted to reconstruction network metabolic_engineering genome by pablocarb on 2009-11-04 14:31:35 as along with 5 people JeremyZucker schwartzjmc pjmaybank michaelbarton arne
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to systems_biology regulatory network by pablocarb on 2009-10-13 21:45:41 as along with 6 people cassj biomcgary roys kiekyon jjray TRHvidsten
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (03 May 2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to protein_networks protein_interaction protein network centrality by pablocarb on 2009-10-06 16:11:01 as along with 25 people and 2 groups npozo feshbach mgomes lawraga deanmalmgren jmenche muraken davidecellai diamantis dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab
	Evolutionary rate in the protein interaction network. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5568. (26 April 2002), pp. 750-752. by Hunter B. Fraser, Aaron E. Hirsh, Lars M. Steinmetz, Curt Scharfe, Marcus W. Feldman posted to protein_interaction protein network interaction_network interaction evolution by pablocarb on 2009-10-06 14:48:32 as along with 11 people daveGerrard mgomes qluo renewang marcio raiyar dragonrez bjorns timflutre tale friendpine
	Exploring the diversity of complex metabolic networks [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1603-1609. by Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt posted to synthesis reaction network metabolic generation by pablocarb on 2009-09-27 17:54:33 as
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to structure network metabolic fold evolution essential by pablocarb on 2009-09-23 13:34:35 as along with 15 people freesci robfsouza michaelbarton venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang phoenixzxl roys
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to structure network evolution by pablocarb on 2009-09-21 14:31:53 as along with 24 people and 2 groups daveGerrard ucbcjbm mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	Underlying principles of natural selection in network evolution: systems biology approach. [My Copy] Evolutionary bioinformatics online, Vol. 3 (2007), pp. 245-262. by Bor-Sen S. Chen, Wei-Sheng S. Wu posted to systems_biology synthetic-biology network evolution by pablocarb on 2009-09-16 13:20:34 as
	Molecular networks as sensors and drivers of common human diseases. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 218-223. by Eric E. Schadt posted to systems-biology sensor network molecular disease by pablocarb on 2009-09-15 10:04:19 as along with 18 people frohike icecrown guhjy daed robfree apocapoc ptrobajo MurphysLab biomcgary greg inesdesantiago brianb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	Exploring the diversity of complex metabolic networks. [My Copy] Bioinformatics (4 January 2005) by Vassily Hatzimanikatis, Chunhui Li, Justin A A. Ionita, Christopher S S. Henry, Matthew D D. Jankowski, Linda J J. Broadbelt posted to systems proposal network metabolic biology by pablocarb on 2009-09-05 18:09:09 as along with 6 people greg betainverse kuhn alexg jdiggans shung
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to enzyme-promis-paper pathway network metabolic database by pablocarb on 2009-08-31 09:34:00 as along with 33 people bertelsen dadiamah ajsferreira Thaverkamp sjcockell JeremyZucker jperkins vkwn VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	The Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1764-1767. by Jason Raymond, Daniel Segre posted to network metabolic evolution by pablocarb on 2009-08-24 14:41:04 as along with 4 people schwartzjmc kentsis kuhn jdiggans
	Influence of metabolic network structure and function on enzyme evolution. [My Copy] Genome biology, Vol. 7, No. 5. (9 May 2006) by Dennis Vitkup, Peter Kharchenko, Andreas Wagner posted to network metabolic evolution enzyme by pablocarb on 2009-08-23 17:16:10 as along with 6 people daveGerrard michaelbarton chica tny JeremyZucker mdstobbe
	A network view of disease and compound screening. [My Copy] Nature reviews. Drug discovery, Vol. 8, No. 4. (April 2009), pp. 286-295. by Eric E. Schadt, Stephen H. Friend, David A. Shaywitz posted to drug network systems-biology by pablocarb on 2009-08-07 02:37:17 as along with 12 people icecrown jbesnard abhishek_tiwari richardbickerton sameersoi mingzhi oelemento ptrobajo phoenixzxl reyez guhjy sschurer
	A network perspective on the evolution of metabolism by gene duplication. [My Copy] Genome biology, Vol. 8, No. 2. (27 February 2007), R26. by J. J. Díaz-Mejía, E. Pérez-Rueda, L. Segovia posted to enzyme evolution metabolic network by pablocarb on 2009-07-27 15:06:17 as
	Genome-Scale Reconstruction of <italic>Escherichia coli</italic>'s Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000312. by Ines Thiele, Neema Jamshidi, Ronan M. Fleming, Bernhard Palsson posted to network systems-biology bioretro by pablocarb on 2009-03-22 12:25:25 as along with 3 people TRHvidsten trfield dolchan
	A critical examination of stoichiometric and path-finding approaches to metabolic pathways [My Copy] Brief Bioinform (24 April 2008), bbn018. by Francisco J. Planes, John E. Beasley posted to metabolic network pathway synthesis bioretro by pablocarb on 2009-03-17 18:47:38 as along with 5 people lflorez guhjy ptrobajo renatomilani shung
	MetaPath Online: a web server implementation of the network expansion algorithm. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by T. Handorf, O. Ebenhöh posted to metabolic network pathway synthesis bioretro by pablocarb on 2009-03-17 18:47:18 as along with 3 people schwartzjmc lflorez JeremyZucker
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to alllostery network by pablocarb on 2009-03-09 16:39:24 as along with 9 people and 3 groups anuragsethi skywalkerus02 sobolevnrm AngelB eallain allmensch gane5h apaydin barry baker-group structural_bioinformatics McCammon
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (21 August 2008), pp. 1158684-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to interactions network yeast bioretro by pablocarb on 2009-01-17 17:02:06 as
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network [My Copy] Nature., Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong Han, Nicolas Bertin, Tong Hao, et al.Debra Goldberg, Gabriel Berriz, Lan Zhang, Denis Dupuy, Albertha Walhout, Michael Cusick, Frederick Roth, Marc Vidal posted to dynamics modularity network by pablocarb on 2009-01-17 17:02:03 as
	Specificity and Stability in Topology of Protein Networks [My Copy] Science, Vol. 296, No. 5569. (3 May 2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted to modularity network robustness by pablocarb on 2009-01-17 17:02:03 as
	Network analysis of protein structures identifies functional residues. [My Copy] Journal of molecular biology, Vol. 344, No. 4. (3 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to conservation function network by pablocarb on 2009-01-17 17:02:03 as
	Reuse of structural domain-domain interactions in protein networks [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (18 July 2007), pp. 259-259. by Benjamin Schuster-Bockler, Alex Bateman posted to domain interactions network by pablocarb on 2009-01-17 17:02:02 as
	Cooperation Prevails When Individuals Adjust Their Social Ties [My Copy] PLoS Computational Biology, Vol. 2, No. 10. (1 October 2006), pp. 140-140. by Francisco Santos, Jorge Pacheco, Tom Lenaerts posted to evolutionary mutations network by pablocarb on 2009-01-17 17:02:02 as
	Comparing community structure identification [My Copy] CiteULike: nettraq's library by Leon Danon, Jordi Duch, Albert Diaz-Guilera, Alex Arenas posted to modularity network by pablocarb on 2009-01-17 17:02:02 as
	Modularity and Dynamics of Cellular Networks [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), pp. 174-174. by Yuan Qi, Hui Ge posted to dynamics network by pablocarb on 2009-01-17 17:02:02 as
	In Search of the Biological Significance of Modular Structures in Protein Networks [My Copy] PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), pp. 107-107. by Zhi Wang, Jianzhi Zhang posted to modularity network by pablocarb on 2009-01-17 17:02:02 as
	Mixture models and exploratory analysis in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 23. (5 June 2007), pp. 9564-9569. by M. E. J. Newman, E. A. Leicht posted to network by pablocarb on 2009-01-17 17:02:02 as
	Network analysis of protein dynamics, Csaba Bode, Istvan A. Kovacs, Mate S. Szalay, Robin Palotai, Tamas Korcsmaros, Peter Csermely, invited review to FEBS Letters [My Copy] posted to dynamics network protein by pablocarb on 2009-01-17 17:02:02 as
	How accurate and statistically robust are catalytic site predictions based on closeness centrality? [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (11 May 2007), pp. 153-153. by Eric Chea, Dennis Livesay posted to catalytic network prediction by pablocarb on 2009-01-17 17:02:02 as
	Specificity and Evolvability in Eukaryotic Protein Interaction Networks [My Copy] PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), pp. 25-25. by Pedro Beltrao, Luis Serrano posted to network specificity by pablocarb on 2009-01-17 17:02:01 as
	Quantifying social group evolution [My Copy] Nature, Vol. 446, No. 7136. (5 April 2007), pp. 664-667. by Gergely Palla, Albert-Laszlo Barabasi, Tamas Vicsek posted to network by pablocarb on 2009-01-17 17:02:01 as
	Modelling biological complexity: a physical scientist's perspective [My Copy] The Royal Society - Interface, Vol. 2, No. 4. (22 September 2005), pp. 267-280. by Peter Coveney, Philip Fowler posted to network by pablocarb on 2009-01-17 17:02:00 as
	Complex networks and simple models in biology [My Copy] posted to network by pablocarb on 2009-01-17 17:02:00 as
	Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph -- Ma et al. 20 (12): 1870 -- Bioinformatics [My Copy] posted to clustering modularity network by pablocarb on 2009-01-17 17:02:00 as
	Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data -- Sontag et al. 20 (12): 1877 -- Bioinformatics [My Copy] posted to dynamics modeling network by pablocarb on 2009-01-17 17:02:00 as
	The connectivity structure, giant strong component and centrality of metabolic networks -- Ma and Zeng 19 (11): 1423 -- Bioinformatics [My Copy] posted to network by pablocarb on 2009-01-17 17:02:00 as
	A joint model of regulatory and metabolic networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (4 July 2006), pp. 332-332. by Chen-Hsiang Yeang, Martin Vingron posted to control network by pablocarb on 2009-01-17 17:02:00 as
	Hierarchical modularity of nested bow-ties in metabolic networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (18 August 2006), pp. 386-386. by Jing Zhao, Hong Yu, Jian-Hua Luo, Zhi-Wei Cao, Yi-Xue Li posted to modularity network by pablocarb on 2009-01-17 17:02:00 as
	Inferring topology from clustering coefficients in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (30 November 2006), pp. 519-519. by Caroline Friedel, Ralf Zimmer posted to clustering network protein by pablocarb on 2009-01-17 17:02:00 as
	Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery [My Copy] BMC Systems Biology, Vol. 1, No. 1. (15 February 2007), pp. 13-13. by William Bosl posted to fuzzy network systems-biology by pablocarb on 2009-01-17 17:02:00 as
	From the Cover: A simple physical model for scaling in protein-protein interaction networks [My Copy] posted to hydrophobicity network protein by pablocarb on 2009-01-17 17:02:00 as
	Network-based prediction of protein function [My Copy] Mol Syst Biol, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function network prediction protein systems-biology by pablocarb on 2009-01-17 17:01:59 as
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis Amaral posted to modularity network participation by pablocarb on 2009-01-17 17:01:59 as
	Advanced Methods and Algorithms for Biological Networks Analysis [My Copy] Proceedings of the IEEE, Vol. 94, No. 4. (2006), pp. 832-832. posted to network systems-biology by pablocarb on 2009-01-17 17:01:59 as
	From the Cover: Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to modularity network by pablocarb on 2009-01-17 17:01:59 as
	Spontaneous evolution of modularity and network motifs. [My Copy] Proceedings of the National Academy of Sciences of the United States of America., Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to modularity network by pablocarb on 2009-01-17 17:01:59 as
	Topology of small-world networks of protein-protein complex structures -- del Sol et al. 21 (8): 1311 -- Bioinformatics [My Copy] posted to centrality network by pablocarb on 2009-01-17 17:01:59 as
	Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non-enzyme families -- del Sol et al. 15 (9): 2120 -- Protein Science [My Copy] posted to centrality network by pablocarb on 2009-01-17 17:01:59 as

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pablocarb's network [53 articles] Export Sort

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