pachorip's Schmidt:B [1 article]

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A fast hybrid short read fragment assembly algorithm

Bioinformatics In Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280.

by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi

posted to 14 by pachorip on 2009-08-12 16:32:08

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Abstract

Summary: The shorter and vastly more numerous reads produced by second-generation sequencing technologies require new tools that can assemble massive numbers of reads in reasonable time. Existing short-read assembly tools can be classified into two categories: greedy extension-based and graph-based. While the graph-based approaches are generally superior in terms of assembly quality, the computer resources required for building and storing a huge graph are very high. In this article, we present Taipan, an assembly algorithm which can be viewed as a ...

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pachorip's Schmidt:B [1 article]

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