pansapiens's library 309 articles Export

	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to protein prediction function bioinformatics by pansapiens on 2009-11-10 01:05:23 as along with 19 people and 1 group kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Fold space unlimited [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (08 June 2009), pp. 312-320. by Manfred J. Sippl posted to structure review protein fold by pansapiens on 2009-11-09 07:27:12 as along with 2 people and 1 group skywalkerus02 davidalee Orengo Group Journal Picks
	Genes mirror geography within Europe [My Copy] Nature, Vol. 456, No. 7218. (31 August 2008), pp. 98-101. by John Novembre, Toby Johnson, Katarzyna Bryc, et al.Zoltan Kutalik, Adam R. Boyko, Adam Auton, Amit Indap, Karen S. King, Sven Bergmann, Matthew R. Nelson, Matthew Stephens, Carlos D. Bustamante posted to snps pca human genomics bioinformatics by pansapiens on 2009-10-20 06:42:40 as along with 13 people and 2 groups engelhardt anphony ArtemPankin huzz Zephyrus druvus jfr inesdesantiago wilbur jo_davies wsjames pkonings djkt Khavkin's lab Roswell Cancer Crosstalk
	Building alternate protein structures using the elastic network model [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Qingyi Yang, Kim A. Sharp posted to protein normal_modes modelling dynamics conformation by pansapiens on 2009-10-16 09:52:57 as along with 5 people and 2 groups klexa abovell sobolevnrm oteri middledomain baker-group Structural Biology Group TorVergata
	Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17383-17388. by Yalda Javadi, Ewan R. G. Main posted to tpr tetratricopeptide structure repeat protein kinetics folding by pansapiens on 2009-10-08 06:52:09 as along with 1 person carlosjavierna
	cathepsins Ce1, Ce2, and Ce3 in C elegans. [My Copy] Worm Breeder's Gazette, Vol. 9 (1986) by G. J. Sarkis, J. D. Ashcom, L. A. Jacobson posted to proteases pepstatin inhibitors celegans by pansapiens on 2009-10-05 23:10:24 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action [My Copy] Theoretical Population Biology, Vol. 61, No. 4. (01 June 2002), pp. 481-487. by J. Eisen posted to sequence phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:45:57 as
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted to sequence phylogeny phylogenetics methods evolution blast bioinformatics by pansapiens on 2009-09-28 07:18:35 as along with 6 people and 3 groups ana dayjm mycitation indigoviolet AaronDarling cerca structural_bioinformatics Bioinformatics EisenLab
	Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. [My Copy] Genome research, Vol. 8, No. 3. (1 March 1998), pp. 163-167. by J. A. Eisen posted to sequence review phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:04:29 as along with 4 people AaronDarling druvus gjuggler sgoetz
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure protein evolution correlated_mutations by pansapiens on 2009-09-22 05:42:53 as along with 10 people and 1 group yyfwuhan cmzmasek dgront robfsouza pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	Clickstream Data Yields High-Resolution Maps of Science [My Copy] PLoS ONE, Vol. 4, No. 3. (11 March 2009), e4803. by Johan Bollen, Herbert Van de Sompel, Aric Hagberg, et al.Luis Bettencourt, Ryan Chute, Marko A. Rodriguez, Lyudmila Balakireva posted to web science online network citation bibliometrics by pansapiens on 2009-09-19 00:29:37 as along with 36 people and 6 groups antonkratz daforerog mawds CameronNeylon alhoori bcjordan cobi dullhunk carlblesius tfuji Scis0000002 jmchauvet markymaypo birukou nancydiana lmichan emayorga tnhh jago klamma yzhang hughesro idoerg OriginalLurch2 atphan rcrane Gaetan nojhan kh287 silberbauer psique fgibson druvus deanmalmgren ErikiLund stajich mgh-lcs hst-bmi ARTFL social_navigation Convention on Knowledge Commons Mycology
	Ortholog detection using the reciprocal smallest distance algorithm. [My Copy] Methods Mol Biol, Vol. 396 (2007), pp. 95-110. by D. P. Wall, T. Deluca posted to phylogeny orthologs evolution bioinformatics by pansapiens on 2009-09-03 23:32:47 as along with 4 people maximilianh dquest operon cerca
	Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000475. by Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz posted to protein peptide modelling chaperone binding by pansapiens on 2009-09-01 07:40:45 as along with 2 people klexa biomcgary
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to bioinformatics modelling motif protein structure tools web_based by pansapiens on 2009-08-11 07:08:31 as along with 6 people HawkinsJohnC tjimenez reyez massivemayhem chad_davis Evangelia
	Protein Structure Prediction: Inroads to Biology [My Copy] Molecular Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819. by Donald Petrey, Barry Honig posted to modelling prediction protein review structure by pansapiens on 2009-08-10 03:42:52 as along with 4 people and 2 groups vavi marcius penka Haggan BioinfoCIPF SGU-CIPF
	Genome pool strategy for structural coverage of protein families. [My Copy] Structure (London, England : 1993), Vol. 16, No. 11. (12 November 2008), pp. 1659-1667. by Lukasz Jaroszewski, Lukasz Slabinski, John Wooley, et al.Ashley M. Deacon, Scott A. Lesley, Ian A. Wilson, Adam Godzik posted to bioinformatics crystalization crystallography protein structure by pansapiens on 2009-08-10 03:15:47 as
	The difference between organelles and endosymbionts [My Copy] Current Biology, Vol. 16, No. 24. (19 December 2006), pp. R1016-R1017. by U. Theissen, W. Martin posted to chloroplasts endosymbiosis import mitochondria plastid protein by pansapiens on 2009-07-26 09:09:15 as
	CREDO: A Protein-Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted to bioinformatics cheminformatics database drug ligand protein by pansapiens on 2009-07-03 04:28:33 as along with 6 people mijam richardbickerton bicko nanonan massivemayhem higueruelo
	Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Theresa A. Ramelot, Srivatsan Raman, Alexandre P. Kuzin, et al.Rong Xiao, Li-Chung Ma, Thomas B. Acton, John F. Hunt, Gaetano T. Montelione, David Baker, Michael A. Kennedy posted to crystallography methods modelling molecular_replacement nmr protein rosetta structure by pansapiens on 2009-06-29 06:27:14 as along with 2 people sunhwan neils
	An ER-Mitochondria Tethering Complex Revealed by a Synthetic Biology Screen [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 477-481. by Benoit Kornmann, Erin Currie, Sean R. Collins, et al.Maya Schuldiner, Jodi Nunnari, Jonathan S. Weissman, Peter Walter posted to er lipid mdm10 mdm12 mitochondria mmm1 transport by pansapiens on 2009-06-29 01:12:06 as along with 3 people jbhiatt leliavski paulschlesinger
	Structural basis of enzyme encapsulation into a bacterial nanocompartment [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 9. (31 August 2008), pp. 939-947. by Markus Sutter, Daniel Boehringer, Sascha Gutmann, et al.Susanne Günther, David Prangishvili, Martin J. Loessner, Karl O. Stetter, Eilika Weber-Ban, Nenad Ban posted to compartment encapsulin large protein structure vault by pansapiens on 2009-06-19 01:27:30 as along with 3 people csanford grahamc kevinchannon
	Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4278-4283. by Piotr E. Marszalek, Hongbin Li, Andres F. Oberhauser, Julio M. Fernandez posted to afm by pansapiens on 2009-06-09 04:54:55 as along with 1 person and 1 group skoch3 Koch_Lab
	Cooperative Assembly of beta-Barrel Pore-Forming Toxins [My Copy] The Journal of Biochemistry, Vol. 136, No. 5. (2004), 563. by Vananh T. Nguyen, Yoshiyuki Kamio posted to assembly beta_barrel macpf pore review toxin by pansapiens on 2009-06-09 02:45:34 as
	It's the DNA That Counts [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1156-1157. by Christina D. Smolke posted to circuits computation counter synthetic_biology by pansapiens on 2009-06-05 04:33:54 as along with 3 people abhishek_tiwari mjoach alexknight
	Genomics of an extreme psychrophile, Psychromonas ingrahamii [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 210. by Monica Riley, James Staley, Antoine Danchin, et al.Ting Z. Wang, Thomas Brettin, Loren Hauser, Miriam Land, Linda Thompson posted to bacteria cold extremeophile genomics by pansapiens on 2009-05-18 03:09:50 as along with 4 people druvus kiekyon MeganBarnett neils
	HHomp--prediction and classification of outer membrane proteins. [My Copy] Nucleic acids research (8 May 2009) by Michael Remmert, Dirk Linke, Andrei N N. Lupas, Johannes Söding posted to beta_barrel bioinformatics database hmm membrane protein by pansapiens on 2009-05-13 03:00:57 as
	Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7702-7707. by David Stoddart, Andrew J. Heron, Ellina Mikhailova, Giovanni Maglia, Hagan Bayley posted to beta_barrel dna electrophysiology electrostatic pore sequencing by pansapiens on 2009-04-23 00:33:36 as along with 6 people and 1 group samjlord guhjy daforerog operon JoGornall idoerg moernerlab
	Getting to the core of the gut microbiome [My Copy] Nat Biotech, Vol. 27, No. 4. (April 2009), pp. 344-346. by Matthias H. Tschop, Philip Hugenholtz, Christopher L. Karp posted to bacteria environment gut metagenomics by pansapiens on 2009-04-09 06:29:10 as along with 2 people bluto neils
	A kernel for the Tropical Disease Initiative [My Copy] Nat Biotech, Vol. 27, No. 4. (April 2009), pp. 320-321. by Leticia Orti, Rodrigo J. Carbajo, Ursula Pieper, et al.Narayanan Eswar, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd, Antonio Pineda-Lucena, Andrej Sali, Marc A. Marti-Renom posted to bioinformatics collaboration disease drug_design malaria open_source plasmodium portal software by pansapiens on 2009-04-08 04:17:51 as
	Physical and genetic characterization of an outer-membrane protein (OmpM1) containing an N-terminal S-layer-like homology domain from the phylogenetically Gram-positive gut anaerobe Mitsuokella multacida [My Copy] Anaerobe (20 January 2009) by M. L. Kalmokoff, J. W. Austin, T. D. Cyr, M. A. Hefford, R. M. Teather, L. B. Selinger posted to beta_barrel gram-positive membrane outer_membrane protein by pansapiens on 2009-04-08 03:59:18 as
	Biological Systems from an Engineer's Point of View [My Copy] PLoS Biol, Vol. 7, No. 1. (20 January 2009), e1000021. by Gregory T. Reeves, Scott E. Fraser posted to development differentiation engineering mathematics modelling synthetic_biology by pansapiens on 2009-02-07 03:22:19 as along with 9 people GeeSharpMinor nuin pablocarb pawelszczesny tswayne dswan dullhunk aalibes druvus
	When it comes to homology, bad habits die hard [My Copy] Trends in Biochemical Sciences (30 January 2009) by A. Marabotti, A. Facchiano posted to evolution homology literature protein sequence by pansapiens on 2009-01-31 22:33:59 as along with 4 people mmourez carlosjavierna fgibson reyez
	Rapid Membrane Disruption by a Perforin-Like Protein Facilitates Parasite Exit from Host Cells [My Copy] Science, Vol. 323, No. 5913. (23 January 2009), pp. 530-533. by Bjorn F. C. Kafsack, Janethe D. O. Pena, Isabelle Coppens, Sandeep Ravindran, John C. Boothroyd, Vern B. Carruthers posted to beta_barrel lysin lytic macpf membrane parasite perforin protein by pansapiens on 2009-01-28 23:03:55 as along with 3 people cchand kshundyak paulschlesinger
	Gene synthesis demystified. [My Copy] Trends in biotechnology, Vol. 27, No. 2. (26 February 2009), pp. 63-72. by Michael J. Czar, J. Christopher Anderson, Joel S. Bader, Jean Peccoud posted to methods molbiol review synthetic_biology by pansapiens on 2009-01-28 00:11:24 as along with 6 people JamesBarger bertelsen antonkratz guhjy Synthetic_Biology_Literature Vincent_Rouilly
	The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria [My Copy] Science, Vol. 323, No. 5912. (16 January 2009), pp. 379-382. by Nancy A. Moran, Heather J. Mclaughlin, Rotem Sorek posted to bacteria endosymbiosis evolution genomics symbiosis by pansapiens on 2009-01-20 00:11:10 as along with 7 people and 2 groups kinestetika JeremyZucker emptyhb abizar behindtherabbit bpb djkt MetabolicModeling iSEEM
	Protein Structure Refinement Using 13Cα Chemical Shift Tensors [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Benjamin J. Wylie, Charles D. Schwieters, Eric Oldfield, Chad M. Rienstra posted to chemical_shift nmr protein structure by pansapiens on 2009-01-08 23:55:51 as
	Questioning the Ubiquity of Neofunctionalization [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (2 January 2009), e1000252. by Todd A. Gibson, Debra S. Goldberg posted to evolution function neofunctionalization protein by pansapiens on 2009-01-06 20:58:09 as along with 7 people winterschlaefer JustinCrocker pinney VGreiff druvus cabbagesofdoom djkt
	Mitochondrial drug delivery systems for macromolecule and their therapeutic application to mitochondrial diseases. [My Copy] Advanced drug delivery reviews, Vol. 60, No. 13-14. (v 2008), pp. 1439-1462. by Y. Yamada, H. Harashima posted to drugs import liposome mitochondria protein therapy by pansapiens on 2008-12-31 00:53:34 as
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to alignment bioinformatics protein structure by pansapiens on 2008-12-24 00:45:41 as along with 13 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus chad_davis taguchi
	Inter- and intramolecular contacts in a membrane protein/surfactant complex observed by heteronuclear dipole-to-dipole cross-relaxation. [My Copy] Journal of magnetic resonance (San Diego, Calif. : 1997) (6 December 2008) by Laurent J J. Catoire, Manuela Zoonens, Carine van V. Heijenoort, Fabrice Giusti, Jean-Luc L. Popot, Eric Guittet posted to bacteria lipid membrane nmr outer_membrane protein structure by pansapiens on 2008-12-24 00:17:39 as
	Crystal Structure of a Major Outer Membrane Protein from Thermus thermophilus HB27. [My Copy] Journal of molecular biology (10 December 2008) by Alexander Brosig, Jutta Nesper, Winfried Boos, Wolfram Welte, Kay Diederichs posted to bacteria beta_barrel crystallography folding membrane protein structure thermophile by pansapiens on 2008-12-24 00:14:06 as
	Combining evidence using p-values: application to sequence homology searches. [My Copy] Bioinformatics, Vol. 14, No. 1. (1998), pp. 48-54. by T. L. Bailey, M. Gribskov posted to bioinformatics motif probability statistics by pansapiens on 2008-12-14 03:01:50 as along with 3 people and 1 group bshkspr indigoviolet sconlan EisenLab
	MEME: discovering and analyzing DNA and protein sequence motifs [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted to bioinformatics dna motif protein software by pansapiens on 2008-12-14 02:34:14 as along with 8 people stharward wowalz coldmeadow yevishere nklee bryankr dquest isimpson
	Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 12. (15 June 2006), pp. 1536-1537. by V. Vacic, L. M. Iakoucheva, P. Radivojac posted to bioinformatics dna motif protein sequence sequence_logo software tools visualization by pansapiens on 2008-12-01 22:56:04 as along with 1 person calderonv
	Neutralism and selectionism: a network-based reconciliation. [My Copy] Nature reviews. Genetics, Vol. 9, No. 12. (29 December 2008), pp. 965-974. by A. Wagner posted to evolution protein by pansapiens on 2008-11-26 04:33:22 as along with 10 people gwallau operon chica ilyashl Petersarkies ccots lp2 renewang pkonings gjuggler
	Length-based encoding of binary data in DNA. [My Copy] Langmuir : the ACS journal of surfaces and colloids, Vol. 24, No. 5. (4 March 2008), pp. 1613-1616. by N. G. Portney, Y. Wu, L. K. Quezada, S. Lonardi, M. Ozkan posted to computation dna by pansapiens on 2008-11-22 01:32:04 as
	The role of hydrophobic interactions in positioning of peripheral proteins in membranes [My Copy] BMC Structural Biology, Vol. 7 (29 June 2007), 44. by Andrei L. Lomize, Irina D. Pogozheva, Mikhail A. Lomize, Henry I. Mosberg posted to lipoprotein membrane peripheral protein structure by pansapiens on 2008-11-18 04:47:48 as along with 2 people kallberg paulschlesinger
	In-Situ Observation of the Inside-to-Outside Molecular Transport of a Liposome [My Copy] J. Phys. Chem. B (13 November 2008) by Joon H. Kim, Mahn W. Kim posted to lipid liposome membrane transport by pansapiens on 2008-11-18 04:36:28 as along with 1 person paulschlesinger
	Polar or Apolar—The Role of Polarity for Urea-Induced Protein Denaturation [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (14 November 2008), e1000221. by Martin C. Stumpe, Helmut Grubmüller posted to folding md protein simulation urea by pansapiens on 2008-11-18 04:35:32 as along with 3 people dsmueller paulschlesinger biehl
	Significance of gapped sequence alignments. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 9. (November 2008), pp. 1187-1194. by L. A. Newberg posted to alignment bioinformatics dna protein sequence statistics by pansapiens on 2008-11-17 03:43:20 as along with 3 people vwchan treangen nuin

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protein	213
zotero-import	132
membrane	108
structure	84
beta_barrel	42
omp85	37
evolution	32
modelling	32
bioinformatics	31
sam50	22
sam_complex	22
sequence	18
methods	15
nmr	15
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alignment	13
bacteria	13
review	13
dna	10
folding	9
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prediction	9
dynamics	8
import	8
sam35sam37	8
crystallography	7
interactions	7
molbiol	7
mitochondrial	6
outer_membrane	6
software	6
expression	5
function	5
helix	5
homology	5
motif	5
phylogeny	5
purification	5
synthetic_biology	5
biology	4
blast	4
chaperone	4
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fat_virus	4
genomics	4
lipid	4
neofunctionalization	4
obesity	4
pore	4
proteins	4
search	4
vdac	4
virus	4
assembly	3
autotransporter	3
comparison	3
computation	3
conformation	3
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duplication	3
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hmm	3
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porin	3
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14-3-3	2
a2	2
bilayer	2
binding	2
casein	2
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engineering	2
exon	2
fold	2
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intron	2
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macpf	2
md	2
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structural	2
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two-partner	2
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active	1
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er	1
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ion	1
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quackery	1
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refolding	1
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tom20	1
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two-component	1
ultracentrifugation	1
unfolding	1
urea	1
vault	1
virulence	1
wd_repeat	1
web	1
web_based	1
yeast	1

pansapiens's library 309 articles Export

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