pansapiens's bioinformatics [31 articles] Export

Recent papers added to pansapiens's library classified by the tag bioinformatics. You can also see everyone's bioinformatics.

Hide details

	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to protein prediction function bioinformatics by pansapiens on 2009-11-10 01:05:23 as along with 19 people and 1 group kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Genes mirror geography within Europe [My Copy] Nature, Vol. 456, No. 7218. (31 August 2008), pp. 98-101. by John Novembre, Toby Johnson, Katarzyna Bryc, et al.Zoltan Kutalik, Adam R. Boyko, Adam Auton, Amit Indap, Karen S. King, Sven Bergmann, Matthew R. Nelson, Matthew Stephens, Carlos D. Bustamante posted to snps pca human genomics bioinformatics by pansapiens on 2009-10-20 06:42:40 as along with 13 people and 2 groups engelhardt anphony ArtemPankin huzz Zephyrus druvus jfr inesdesantiago wilbur jo_davies wsjames pkonings djkt Khavkin's lab Roswell Cancer Crosstalk
	Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action [My Copy] Theoretical Population Biology, Vol. 61, No. 4. (01 June 2002), pp. 481-487. by J. Eisen posted to sequence phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:45:57 as
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted to sequence phylogeny phylogenetics methods evolution blast bioinformatics by pansapiens on 2009-09-28 07:18:35 as along with 6 people and 3 groups ana dayjm mycitation indigoviolet AaronDarling cerca structural_bioinformatics Bioinformatics EisenLab
	Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. [My Copy] Genome research, Vol. 8, No. 3. (1 March 1998), pp. 163-167. by J. A. Eisen posted to sequence review phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:04:29 as along with 4 people AaronDarling druvus gjuggler sgoetz
	Ortholog detection using the reciprocal smallest distance algorithm. [My Copy] Methods Mol Biol, Vol. 396 (2007), pp. 95-110. by D. P. Wall, T. Deluca posted to phylogeny orthologs evolution bioinformatics by pansapiens on 2009-09-03 23:32:47 as along with 4 people maximilianh dquest operon cerca
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to bioinformatics modelling motif protein structure tools web_based by pansapiens on 2009-08-11 07:08:31 as along with 6 people HawkinsJohnC tjimenez reyez massivemayhem chad_davis Evangelia
	Genome pool strategy for structural coverage of protein families. [My Copy] Structure (London, England : 1993), Vol. 16, No. 11. (12 November 2008), pp. 1659-1667. by Lukasz Jaroszewski, Lukasz Slabinski, John Wooley, et al.Ashley M. Deacon, Scott A. Lesley, Ian A. Wilson, Adam Godzik posted to bioinformatics crystalization crystallography protein structure by pansapiens on 2009-08-10 03:15:47 as
	CREDO: A Protein-Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted to bioinformatics cheminformatics database drug ligand protein by pansapiens on 2009-07-03 04:28:33 as along with 6 people mijam richardbickerton bicko nanonan massivemayhem higueruelo
	HHomp--prediction and classification of outer membrane proteins. [My Copy] Nucleic acids research (8 May 2009) by Michael Remmert, Dirk Linke, Andrei N N. Lupas, Johannes Söding posted to beta_barrel bioinformatics database hmm membrane protein by pansapiens on 2009-05-13 03:00:57 as
	A kernel for the Tropical Disease Initiative [My Copy] Nat Biotech, Vol. 27, No. 4. (April 2009), pp. 320-321. by Leticia Orti, Rodrigo J. Carbajo, Ursula Pieper, et al.Narayanan Eswar, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd, Antonio Pineda-Lucena, Andrej Sali, Marc A. Marti-Renom posted to bioinformatics collaboration disease drug_design malaria open_source plasmodium portal software by pansapiens on 2009-04-08 04:17:51 as
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to alignment bioinformatics protein structure by pansapiens on 2008-12-24 00:45:41 as along with 13 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus chad_davis taguchi
	Combining evidence using p-values: application to sequence homology searches. [My Copy] Bioinformatics, Vol. 14, No. 1. (1998), pp. 48-54. by T. L. Bailey, M. Gribskov posted to bioinformatics motif probability statistics by pansapiens on 2008-12-14 03:01:50 as along with 3 people and 1 group bshkspr indigoviolet sconlan EisenLab
	MEME: discovering and analyzing DNA and protein sequence motifs [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted to bioinformatics dna motif protein software by pansapiens on 2008-12-14 02:34:14 as along with 8 people stharward wowalz coldmeadow yevishere nklee bryankr dquest isimpson
	Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 12. (15 June 2006), pp. 1536-1537. by V. Vacic, L. M. Iakoucheva, P. Radivojac posted to bioinformatics dna motif protein sequence sequence_logo software tools visualization by pansapiens on 2008-12-01 22:56:04 as along with 1 person calderonv
	Significance of gapped sequence alignments. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 9. (November 2008), pp. 1187-1194. by L. A. Newberg posted to alignment bioinformatics dna protein sequence statistics by pansapiens on 2008-11-17 03:43:20 as along with 3 people vwchan treangen nuin
	HMMEditor: a visual editing tool for profile hidden Markov model. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Jianyong Dai, Jianlin Cheng posted to bioinformatics hmm hmmer sequence by pansapiens on 2008-10-21 02:18:25 as along with 3 people BioNica barriot justintalbot
	Performance Evaluation of BLAST on SMP Machines [My Copy] Frontiers of High Performance Computing and Networking – ISPA 2006 Workshops (2006), pp. 668-676. by Hong-Soog Kim, Hae-Jin Kim, Dong-Soo Han posted to bioinformatics blast search by pansapiens on 2008-09-29 03:42:04 as
	Database Allocation Strategies for Parallel BLAST Evaluation on Clusters [My Copy] Distrib. Parallel Databases, Vol. 13, No. 1. (2003), pp. 99-127. by Rogério, Sérgio Lifschitz posted to bioinformatics blast search by pansapiens on 2008-09-29 03:15:04 as
	CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 2. (2008), S10. by Svetlin Manavski, Giorgio Valle posted to bioinformatics blast code gpu methods search by pansapiens on 2008-09-11 05:14:43 as along with 9 people ihaque jmanning2k druvus sterovetta operon alexgeorgiou antonkratz joule bschaeli
	HMM Logos for visualization of protein families. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (21 January 2004), 7. by Benjamin Schuster-Böckler, Jörg Schultz, Sven Rahmann posted to bioinformatics hmm protein sequence tools visualization by pansapiens on 2008-08-30 11:39:07 as along with 2 people BioNica analogAI
	GOTax: investigating biological processes and biochemical activities along the taxonomic tree [My Copy] Genome Biology, Vol. 8 (08 March 2007), R33. by Andreas Schlicker, Jorg Rahnenfuhrer, Mario Albrecht, Thomas Lengauer, Francisco S. Domingues posted to bioinformatics genomics software taxonomy by pansapiens on 2008-07-30 00:32:06 as along with 2 people cmzmasek marck
	Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences. [My Copy] Nucleic acids research, Vol. 36, No. 13. (27 August 2008), pp. 4286-4294. by S. Pitre, C. North, M. Alamgir, et al.M. Jessulat, A. Chan, X. Luo, J. R. Green, M. Dumontier, F. Dehne, A. Golshani posted to bioinformatics interactions protein yeast by pansapiens on 2008-06-28 07:38:01 as along with 6 people kiekyon zwang brianb neils renatomilani guhjy
	Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Lukas Burger, Erik van Nimwegen posted to alignment bioinformatics conservation protein by pansapiens on 2008-06-13 02:57:53 as along with 14 people iaolier robfsouza raik sjcockell kengg grahamc laughcry zwang biomcgary cabbagezs roys cdeane gjuggler phoenixzxl
	An evaluation of automated homology modelling methods at low target template sequence similarity [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908. by James A. Dalton, Richard M. Jackson posted to bioinformatics modelling protein structure by pansapiens on 2008-05-05 00:09:25 as along with 5 people cdeane chad_davis biehl neils marti
	TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. [My Copy] Computational biology and chemistry (18 March 2008) by Yu-Yen Y. Ou, M Michael M. Gromiha, Shu-An A. Chen, Makiko Suwa posted to beta_barrel bioinformatics membrane prediction protein by pansapiens on 2008-04-26 09:34:58 as
	An edit script for taxonomic classifications [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Roderic Page, Gabriel Valiente posted to bioinformatics taxonomy by pansapiens on 2006-06-09 12:37:01 as along with 1 person and 3 groups kehan biodiversity_conservation Bioinformatics GrassBase
	SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Andy Pang, Andrew Smith, Paulo Nuin, Elisabeth Tillier posted to bioinformatics evolution protein by pansapiens on 2006-06-09 12:23:39 as along with 2 people gjuggler martainn
	Statistical distributions of optimal global alignment scores of random protein sequences [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Hongxia Pang, Jiaowei Tang, Su S. Chen, Shiheng Tao posted to alignment bioinformatics evolution homology sequence by pansapiens on 2006-06-09 07:45:16 as
	Scoring residue conservation. [My Copy] Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241. by W. S. Valdar posted to alignment bioinformatics conservation evolution methods protein review sequence by pansapiens on 2006-05-04 07:17:02 as along with 6 people and 2 groups barry bicko sriram_s cjeans sobolevnrm marti structural_bioinformatics Bioinformatics
	Pegasys: software for executing and integrating analyses of biological sequences. [My Copy] BMC Bioinformatics, Vol. 5 (19 April 2004) by S. P. Shah, D. Y. He, J. N. Sawkins, et al.J. C. Druce, G. Quon, D. Lett, G. X. Zheng, T. Xu, B. F. Ouellette posted to bioinformatics software by pansapiens on 2005-11-24 10:35:54 as along with 5 people daforerog nlapalu eweaver moborg asddd

Note: You may cite this page as: http://www.citeulike.org/user/pansapiens/tag/bioinformatics

protein	213
zotero-import	132
membrane	108
structure	84
beta_barrel	42
omp85	37
evolution	32
modelling	32
bioinformatics	31
sam50	22
sam_complex	22
sequence	18
methods	15
nmr	15
protein_engineering	14
alignment	13
bacteria	13
review	13
dna	10
folding	9
mitochondria	9
prediction	9
dynamics	8
import	8
sam35sam37	8
crystallography	7
interactions	7
molbiol	7
mitochondrial	6
outer_membrane	6
software	6
expression	5
function	5
helix	5
homology	5
motif	5
phylogeny	5
purification	5
synthetic_biology	5
biology	4
blast	4
chaperone	4
disorder	4
fat_virus	4
genomics	4
lipid	4
neofunctionalization	4
obesity	4
pore	4
proteins	4
search	4
vdac	4
virus	4
assembly	3
autotransporter	3
comparison	3
computation	3
conformation	3
conservation	3
duplication	3
endosymbiosis	3
hmm	3
network	3
phylogenetics	3
porin	3
secretion	3
similarity	3
tools	3
tpr	3
transport	3
14-3-3	2
a2	2
bilayer	2
binding	2
casein	2
chaperones	2
chemistry	2
cloning	2
collaboration	2
correlated_mutations	2
database	2
domain	2
drug_design	2
electrostatic	2
engineering	2
exon	2
fold	2
gene_duplication	2
gram-negative	2
gram-positive	2
graph	2
intron	2
lattice	2
lipoprotein	2
liposome	2
macpf	2
md	2
mdm10	2
mdm12	2
milk	2
mmm1	2
multimer	2
peptide	2
periplasmic	2
protease	2
redundancy	2
science	2
shuffling	2
stability	2
statistics	2
structural	2
surface	2
taxonomy	2
theory	2
theromdynamics	2
two-partner	2
vectors	2
visualization	2
active	1
adhesins	1
afm	1
algorithm	1
amphiphilicity	1
analysis	1
analytical	1
ap4a	1
apoptosis	1
arabidopsis	1
aspartate	1
backbone	1
beta	1
beta-strand	1
bibliometrics	1
bicelle	1
biofuel	1
biophysics	1
biopython	1
celegans	1
cell_wall	1
channel	1
chemical_shift	1
cheminformatics	1
chloroplasts	1
circuits	1
citation	1
code	1
coiled-coil	1
cold	1
compartment	1
complex	1
computational	1
computational-biology	1
construct	1
counter	1
crystalization	1
culture	1
databases	1
design	1
development	1
differentiation	1
dipole	1
disease	1
drug	1
drug-resistance	1
drugs	1
ecoli	1
electrophysiology	1
eletrostatic	1
encapsulin	1
environment	1
enzyme	1
enzymes	1
er	1
exported	1
extremeophile	1
fimbriae	1
gpu	1
gut	1
histidine-kinase	1
hiv-1	1
hmmer	1
hsp70	1
human	1
humans	1
hydrogen_bonding	1
hydrolase	1
information_theory	1
inhibitors	1
inner_membrane	1
ion	1
isoform	1
j-domain	1
kinase	1
kinetics	1
large	1
ldao	1
library	1
ligand	1
ligand_binding	1
ligation	1
literature	1
loop	1
lysin	1
lytic	1
machine_learning	1
malaria	1
mathematics	1
metagenomics	1
metaxin	1
microbial	1
molecular	1
molecular_replacement	1
motifs	1
mutagenesis	1
mutation	1
normal_modes	1
of	1
online	1
open_source	1
orthologs	1
outer	1
overexpression	1
parasite	1
pca	1
pepstatin	1
peptidoglycan	1
perforin	1
peripheral	1
permeability	1
pilus	1
plasmodium	1
plastid	1
portal	1
probability	1
propeller	1
proteases	1
protein-engineering	1
protein-structure	1
protocols	1
quackery	1
rare_codons	1
refolding	1
regulation	1
repeat	1
repeat_proteins	1
repeats	1
restriction_enzyme	1
ribosome	1
rosetta	1
salt_bridge	1
secondary	1
secreted	1
sec-translocon	1
sequence_complexity	1
sequence_logo	1
sequencing	1
signaling	1
simulation	1
site	1
skp	1
snps	1
solid_state	1
sorting	1
stress	1
svm	1
symbiosis	1
targeting	1
tertiary	1
tetratricopeptide	1
therapy	1
thermophile	1
tom20	1
toxin	1
two-component	1
ultracentrifugation	1
unfolding	1
urea	1
vault	1
virulence	1
wd_repeat	1
web	1
web_based	1
yeast	1

pansapiens's bioinformatics [31 articles] Export

pansapiens's tags