pansapiens's modelling [32 articles] Export

Recent papers added to pansapiens's library classified by the tag modelling. You can also see everyone's modelling.

	Building alternate protein structures using the elastic network model [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Qingyi Yang, Kim A. Sharp posted to protein normal_modes modelling dynamics conformation by pansapiens on 2009-10-16 09:52:57 as along with 5 people and 2 groups klexa abovell sobolevnrm oteri middledomain baker-group Structural Biology Group TorVergata
	Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000475. by Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz posted to protein peptide modelling chaperone binding by pansapiens on 2009-09-01 07:40:45 as along with 2 people klexa biomcgary
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to bioinformatics modelling motif protein structure tools web_based by pansapiens on 2009-08-11 07:08:31 as along with 6 people HawkinsJohnC tjimenez reyez massivemayhem chad_davis Evangelia
	Protein Structure Prediction: Inroads to Biology [My Copy] Molecular Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819. by Donald Petrey, Barry Honig posted to modelling prediction protein review structure by pansapiens on 2009-08-10 03:42:52 as along with 4 people and 2 groups vavi marcius penka Haggan BioinfoCIPF SGU-CIPF
	Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Theresa A. Ramelot, Srivatsan Raman, Alexandre P. Kuzin, et al.Rong Xiao, Li-Chung Ma, Thomas B. Acton, John F. Hunt, Gaetano T. Montelione, David Baker, Michael A. Kennedy posted to crystallography methods modelling molecular_replacement nmr protein rosetta structure by pansapiens on 2009-06-29 06:27:14 as along with 2 people sunhwan neils
	Biological Systems from an Engineer's Point of View [My Copy] PLoS Biol, Vol. 7, No. 1. (20 January 2009), e1000021. by Gregory T. Reeves, Scott E. Fraser posted to development differentiation engineering mathematics modelling synthetic_biology by pansapiens on 2009-02-07 03:22:19 as along with 9 people GeeSharpMinor nuin pablocarb pawelszczesny tswayne dswan dullhunk aalibes druvus
	Fuzzy domains: New way of describing flexibility and interdependence of the protein domains [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Semen O. Yesylevskyy, Valery N. Kharkyanen posted to domain dynamics modelling nmr protein structure by pansapiens on 2008-11-04 02:43:05 as
	An evaluation of automated homology modelling methods at low target template sequence similarity [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908. by James A. Dalton, Richard M. Jackson posted to bioinformatics modelling protein structure by pansapiens on 2008-05-05 00:09:25 as along with 5 people cdeane chad_davis biehl neils marti
	Protein Homology Modeling with Heuristic Search for Sequence Alignment [My Copy] (2007) by Doong posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:42 as
	The FoldX web server: an online force field [My Copy] Nucleic acids research, Vol. 33 (July 2005), pp. W382-8. by Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano posted to folding modelling protein software structure zotero-import by pansapiens on 2008-01-11 00:08:42 as
	Detection of homologous proteins by an intermediate sequence search [My Copy] Protein Sci, Vol. 13 (2004), pp. 54-62. by Bino John, Andrej Sali posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:42 as
	Prediction of the structure of symmetrical protein assemblies [My Copy] Proceedings of the National Academy of Sciences, Vol. 104 (November 2007), pp. 17656-17661. by Ingemar Andre, Philip Bradley, Chu Wang, David Baker posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:42 as
	Comparative protein structure modeling by iterative alignment, model building and model assessment [My Copy] Nucleic acids research, Vol. 31 (July 2003), pp. 3982-92. by Bino John, Andrej Sali posted to algorithm alignment modelling of protein structure zotero-import by pansapiens on 2008-01-11 00:08:41 as
	High-resolution design of a protein loop [My Copy] Proceedings of the National Academy of Sciences, Vol. 104 (November 2007), pp. 17668-17673. by Xiaozhen Hu, Huanchen Wang, Hengming Ke, Brian Kuhlman posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:41 as
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450 (November 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. Mccoy, Randy J. Read, David Baker posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:41 as
	Comparative Modeling in Structural Genomics [My Copy] Structure, Vol. 16 (2008), pp. 14-16. by John Moult posted to modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:41 as
	The victor/FRST function for model quality estimation [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12 (December 2005), pp. 1316-27. by Silvio C. E. Tosatto posted to computational databases modelling protein structure zotero-import by pansapiens on 2008-01-11 00:08:41 as
	A multidomain outer membrane protein from Pasteurella multocida: Modelling and simulation studies of PmOmpA [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Corrected Proof by Timothy Carpenter, Syma Khalid, Mark S. P. Sansom posted to dynamics homology membrane modelling protein zotero-import by pansapiens on 2008-01-10 23:59:26 as
	Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space. [My Copy] BMC Bioinformatics, Vol. 6 (28 June 2005) by W. Boomsma, T. Hamelryck posted to loop modelling protein structure by pansapiens on 2006-09-22 06:17:22 as along with 3 people cdeane vavi wouterboomsma
	The Relationship Between Sequence and Interaction Divergence in Proteins [My Copy] Journal of Molecular Biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by Patrick Aloy, Hugo Ceulemans, Alexander Stark, Robert B. Russell posted to complex interactions modelling protein structure by pansapiens on 2006-06-29 07:23:40 as along with 4 people and 2 groups ana eweaver Evangelia RebeccaHamer structural_bioinformatics Bioinformatics
	Tunnel plasticity and quaternary structural integrity of a pentameric protein ring. [My Copy] Protein Sci, Vol. 15, No. 5. (May 2006), pp. 1106-1114. by K. J. Woycechowsky, F. P. Seebeck, D. Hilvert posted to engineering modelling multimer protein structure by pansapiens on 2006-04-30 09:17:33 as
	Packing helices in proteins by global optimization of a potential energy function. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1706-1710. by M. Nanias, M. Chinchio, J. Pillardy, D. R. Ripoll, H. A. Scheraga posted to helix modelling protein structure by pansapiens on 2006-04-27 03:00:02 as along with 1 person kgutwin
	Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances. [My Copy] J Mol Biol, Vol. 233, No. 3. (5 October 1993), pp. 464-479. by B. V. Reddy, T. L. Blundell posted to helix modelling protein structure by pansapiens on 2006-03-23 04:34:18 as along with 3 people and 2 groups ana barry medic0747 structural_bioinformatics Bioinformatics
	Helix packing angle preferences [My Copy] Nat Struct Mol Biol, Vol. 4, No. 11. (November 1997), pp. 915-917. by James U. Bowie posted to helix modelling protein structure by pansapiens on 2006-03-23 04:26:58 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
	Historical review: another 50th anniversary--new periodicities in coiled coils. [My Copy] Trends in biochemical sciences, Vol. 28, No. 12. (December 2003), pp. 679-685. by Markus Gruber, Andrei N. Lupas posted to coiled-coil helix modelling protein structure by pansapiens on 2006-03-23 04:26:09 as along with 2 people martainn TLVincent
	Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion [My Copy] Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354. by Nobuyuki Ota, David A. Agard posted to dynamics methods modelling network protein by pansapiens on 2006-02-15 07:41:29 as along with 3 people and 2 groups barry lna choonpeng structural_bioinformatics Bioinformatics
	Folding in lipid membranes (FILM): A novel method for the prediction of small membrane protein 3D structures [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 4. (30 January 2003), pp. 537-545. by M. Pellegrini-Calace, A. Carotti, D. T. Jones posted to membrane modelling proteins by pansapiens on 2005-11-04 06:52:05 as along with 1 person thaliana
	Accuracy of structure-derived properties in simple comparative models of protein structures. [My Copy] Nucleic Acids Res, Vol. 33, No. 1. (2005), pp. 244-259. by S. Chakravarty, L. Wang, R. Sanchez posted to modelling protein structure by pansapiens on 2005-10-27 07:59:20 as along with 1 person arojas
	Modeling conformational change in macromolecules as an elastic deformation. [My Copy] Proteins, Vol. 10, No. 2. (1991), pp. 162-170. by L. C. Andrews, R. W. Harrison posted to conformation modelling protein structure by pansapiens on 2005-09-01 06:56:27 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Structural mechanisms for domain movements in proteins [My Copy] Biochemistry, Vol. 33, No. 22. (1994), pp. 6739-6749. by M. Gerstein, A. Lesk, C. Chothia posted to dynamics modelling protein by pansapiens on 2005-08-15 09:40:14 as along with 4 people and 5 groups ana barry tny joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Thermodynamic calculations in biological systems [My Copy] Biophysical Chemistry, Vol. In Press, Corrected Proof by Mario L. Amzel, Xavier Siebert, Anthony Armstrong, German Pabon posted to modelling protein theromdynamics by pansapiens on 2005-07-06 03:32:14 as along with 6 people and 3 groups Scis0000002 barry shuns imouthesmp ttjoseph nknii structural_bioinformatics Bioinformatics TCR_Signaling
	Patterns that define the four domains conserved in known and novel isoforms of the protein import receptor Tom20. [My Copy] J Mol Biol, Vol. 347, No. 1. (18 March 2005), pp. 81-93. by V. A. Likić, A. Perry, J. Hulett, et al.M. Derby, A. Traven, R. F. Waller, P. J. Keeling, C. M. Koehler, S. P. Curran, P. R. Gooley, T. Lithgow posted to import isoform mitochondrial modelling protein structure tom20 by pansapiens on 2005-03-23 03:39:25 as along with 1 person Cortel

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protein	213
zotero-import	132
membrane	108
structure	84
beta_barrel	42
omp85	37
evolution	32
modelling	32
bioinformatics	31
sam50	22
sam_complex	22
sequence	18
methods	15
nmr	15
protein_engineering	14
alignment	13
bacteria	13
review	13
dna	10
folding	9
mitochondria	9
prediction	9
dynamics	8
import	8
sam35sam37	8
crystallography	7
interactions	7
molbiol	7
mitochondrial	6
outer_membrane	6
software	6
expression	5
function	5
helix	5
homology	5
motif	5
phylogeny	5
purification	5
synthetic_biology	5
biology	4
blast	4
chaperone	4
disorder	4
fat_virus	4
genomics	4
lipid	4
neofunctionalization	4
obesity	4
pore	4
proteins	4
search	4
vdac	4
virus	4
assembly	3
autotransporter	3
comparison	3
computation	3
conformation	3
conservation	3
duplication	3
endosymbiosis	3
hmm	3
network	3
phylogenetics	3
porin	3
secretion	3
similarity	3
tools	3
tpr	3
transport	3
14-3-3	2
a2	2
bilayer	2
binding	2
casein	2
chaperones	2
chemistry	2
cloning	2
collaboration	2
correlated_mutations	2
database	2
domain	2
drug_design	2
electrostatic	2
engineering	2
exon	2
fold	2
gene_duplication	2
gram-negative	2
gram-positive	2
graph	2
intron	2
lattice	2
lipoprotein	2
liposome	2
macpf	2
md	2
mdm10	2
mdm12	2
milk	2
mmm1	2
multimer	2
peptide	2
periplasmic	2
protease	2
redundancy	2
science	2
shuffling	2
stability	2
statistics	2
structural	2
surface	2
taxonomy	2
theory	2
theromdynamics	2
two-partner	2
vectors	2
visualization	2
active	1
adhesins	1
afm	1
algorithm	1
amphiphilicity	1
analysis	1
analytical	1
ap4a	1
apoptosis	1
arabidopsis	1
aspartate	1
backbone	1
beta	1
beta-strand	1
bibliometrics	1
bicelle	1
biofuel	1
biophysics	1
biopython	1
celegans	1
cell_wall	1
channel	1
chemical_shift	1
cheminformatics	1
chloroplasts	1
circuits	1
citation	1
code	1
coiled-coil	1
cold	1
compartment	1
complex	1
computational	1
computational-biology	1
construct	1
counter	1
crystalization	1
culture	1
databases	1
design	1
development	1
differentiation	1
dipole	1
disease	1
drug	1
drug-resistance	1
drugs	1
ecoli	1
electrophysiology	1
eletrostatic	1
encapsulin	1
environment	1
enzyme	1
enzymes	1
er	1
exported	1
extremeophile	1
fimbriae	1
gpu	1
gut	1
histidine-kinase	1
hiv-1	1
hmmer	1
hsp70	1
human	1
humans	1
hydrogen_bonding	1
hydrolase	1
information_theory	1
inhibitors	1
inner_membrane	1
ion	1
isoform	1
j-domain	1
kinase	1
kinetics	1
large	1
ldao	1
library	1
ligand	1
ligand_binding	1
ligation	1
literature	1
loop	1
lysin	1
lytic	1
machine_learning	1
malaria	1
mathematics	1
metagenomics	1
metaxin	1
microbial	1
molecular	1
molecular_replacement	1
motifs	1
mutagenesis	1
mutation	1
normal_modes	1
of	1
online	1
open_source	1
orthologs	1
outer	1
overexpression	1
parasite	1
pca	1
pepstatin	1
peptidoglycan	1
perforin	1
peripheral	1
permeability	1
pilus	1
plasmodium	1
plastid	1
portal	1
probability	1
propeller	1
proteases	1
protein-engineering	1
protein-structure	1
protocols	1
quackery	1
rare_codons	1
refolding	1
regulation	1
repeat	1
repeat_proteins	1
repeats	1
restriction_enzyme	1
ribosome	1
rosetta	1
salt_bridge	1
secondary	1
secreted	1
sec-translocon	1
sequence_complexity	1
sequence_logo	1
sequencing	1
signaling	1
simulation	1
site	1
skp	1
snps	1
solid_state	1
sorting	1
stress	1
svm	1
symbiosis	1
targeting	1
tertiary	1
tetratricopeptide	1
therapy	1
thermophile	1
tom20	1
toxin	1
two-component	1
ultracentrifugation	1
unfolding	1
urea	1
vault	1
virulence	1
wd_repeat	1
web	1
web_based	1
yeast	1

pansapiens's modelling [32 articles] Export

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