pansapiens's watchlist [more than 800 articles] Export

Recent papers matching pansapiens's watchlist criteria

	Service-based analysis of biological pathways [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 10. (2009), S6. by George Zheng, Athman Bouguettaya posted to web_service soap pathways data-mining analysis by neils on 2009-11-15 23:42:32 as along with 1 person druvus
	Interaction between Plate Make and Protein in Protein Crystallisation Screening [My Copy] PLoS ONE, Vol. 4, No. 11. (16 November 2009), e7851. by Gordon J. King, Kai-En Chen, Gautier Robin, et al.Jade K. Forwood, Begoña Heras, Anil S. Thakur, Bostjan Kobe, Simon P. Blomberg, Jennifer L. Martin posted to structure screening protein methods crystallography by neils on 2009-11-15 22:25:34 as
	Spontaneous liposome formation induced by grafted poly(ethylene oxide) layers: Theoretical prediction and experimentalâverification [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 3. (3 February 1998), pp. 1032-1037. by Igal Szleifer, Oleg V. Gerasimov, David H. Thompson posted to szleif09pdf size shape liposome formation by paulschlesinger on 2009-11-14 21:54:41 as
	Orientational Landscapes of Peptides in Membranes: Prediction of 2H NMR Couplings in a Dynamic Context [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Santi Esteban-Martín, Diana Giménez, Gustavo Fuertes, Jesús Salgado posted to peptides nmr membrane esteb09pdf by paulschlesinger on 2009-11-14 01:53:54 as
	Role of a Conserved Active Site Cation−π Interaction in Escherichia coli Serine Hydroxymethyltransferase [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Mirella Vivoli, Francesco Angelucci, Andrea Ilari, et al.Veronica Morea, Sebastiana Angelaccio, Martino L. di Salvo, Roberto Contestabile posted to vivoli09pdf pi interaction cation by paulschlesinger on 2009-11-14 01:44:21 as
	Expressing and functional analysis of mammalian apoptotic regulators in yeast [My Copy] Cell Death & Differentiation (13 November 2009) by M. T. Greenwood, P. Ludovico posted to yeast regulators greenw09pdf functional expression apoptotic analysis by paulschlesinger on 2009-11-14 01:33:54 as
	Statistical mechanical theory for nonequilibrium systems. X. Nonequilibrium phase transitions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 18. (2009), 184509. by Phil Attard posted to transitions statistical phase mechanic attard09pdf by paulschlesinger on 2009-11-14 01:09:22 as
	Partitioning Recent Greenland Mass Loss [My Copy] Science, Vol. 326, No. 5955. (13 November 2009), pp. 984-986. by Michiel van den Broeke, Jonathan Bamber, Janneke Ettema, et al.Eric Rignot, Ernst Schrama, Willem J. van de Berg, Erik van Meijgaard, Isabella Velicogna, Bert Wouters posted to satellite measurement ice greenland environment climate arctic by neils on 2009-11-14 00:54:38 as along with 2 people and 2 groups SuzanneBevan jago UNFCCC climate_change
	Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. [My Copy] Nucleic acids research (11 November 2009) by Catherine Y. Cormier, Stephanie E. Mohr, Dongmei Zuo, et al.Yanhui Hu, Andreas Rolfs, Jason Kramer, Elena Taycher, Fontina Kelley, Michael Fiacco, Greggory Turnbull, Joshua Labaer posted to structural-genomics repository psi protein plasmid methods expression by neils on 2009-11-14 00:53:28 as
	MicrobesOnline: an integrated portal for comparative and functional genomics. [My Copy] Nucleic acids research (11 November 2009) by Paramvir S. Dehal, Marcin P. Joachimiak, Morgan N. Price, et al.John T. Bates, Jason K. Baumohl, Dylan Chivian, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna L. Dubchak, Eric J. Alm, Adam P. Arkin posted to portal microbial genomics database by neils on 2009-11-14 00:52:33 as along with 1 person kshameer
	Identification of substrates for Ser/Thr kinases using residue based statistical pair potentials [My Copy] Bioinformatics (12 November 2009), btp633. by Narendra Kumar, Debasisa Mohanty posted to substrate statistics protein-serine-threonine prediction potential kinase energy by neils on 2009-11-14 00:51:39 as along with 1 person kshameer
	Co-expression Networks: Graph Properties and Topological Comparisons [My Copy] Bioinformatics (12 November 2009), btp632. by Ramon Xulvi-Brunet, Hongzhe Li posted to topology networks graph comparative coexpression analysis by neils on 2009-11-14 00:50:07 as along with 2 people kshameer phoenixzxl
	The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata [My Copy] Nucl. Acids Res. (13 November 2009), gkp848. by Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavromatis, et al.Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos C. Kyrpides posted to status microbial genomics fold database by neils on 2009-11-14 00:42:35 as
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to unstructured simulation rosetta folding docking das09pdf binding based by paulschlesinger on 2009-11-12 00:10:36 as along with 3 people apaydin ibuch zwang
	The MiST2 database: a comprehensive genomics resource on microbial signal transduction [My Copy] Nucl. Acids Res. (9 November 2009), gkp940. by Luke E. Ulrich, Igor B. Zhulin posted to transduction signal pathways microbiology genomics database by neils on 2009-11-11 22:51:07 as
	Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API [My Copy] PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7710. by Nobuaki Kono, Kazuharu Arakawa, Ryu Ogawa, et al.Nobuhiro Kido, Kazuki Oshita, Keita Ikegami, Satoshi Tamaki, Masaru Tomita posted to web pathways maps kegg google browser api by neils on 2009-11-11 22:48:43 as along with 3 people brianb renatomilani thomaskelder
	How to mark off paths on the protein energy landscape [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18879-18880. by Martin Gruebele posted to protein folding energy_landscape by apaydin on 2009-11-11 16:26:43 as
	Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 19011-19016. by Frank NoÃ©, Christof SchÃ¼tte, Eric Vanden-Eijnden, Lothar Reich, Thomas R. Weikl posted to protein folding by apaydin on 2009-11-11 16:18:08 as
	Physical arguments for distance-weighted interactions in elastic network models for proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. E128-E128. by Konrad Hinsen posted to network model elastic by apaydin on 2009-11-11 16:14:14 as
	Membrane Lipid Polymorphism [My Copy] Methods in Membrane Lipids (2007), pp. 15-26. by Richard M. Epand posted to polymorphism lipid epand07bpdf curvature by paulschlesinger on 2009-11-11 01:15:19 as
	Protein Shape and Crowding Drive Domain Formation and Curvature in Biological Membranes [My Copy] Vol. 94, No. 2. (15 January 2008), pp. 640-647. by Raoul N. Frese, Josep C. Pàmies, John D. Olsen, et al.Svetlana Bahatyrova, Chantal D. van der Weij-de Wit, Thijs J. Aartsma, Cees Otto, C. Neil Hunter, Daan Frenkel, Rienk van Grondelle posted to shape protein membrane frese09pdf curvature crowding by paulschlesinger on 2009-11-10 23:21:33 as
	Protein-Induced Membrane Curvature Investigated through Molecular Dynamics Flexible Fitting [My Copy] Biophysical Journal, Vol. 97, No. 1. (08 July 2009), pp. 321-329. by Jen Hsin, James Gumbart, Leonardo G. Trabuco, et al.Elizabeth Villa, Pu Qian, C. Neil Hunter, Klaus Schulten posted to simulation membrane hsin09pdf curvature by paulschlesinger on 2009-11-10 23:17:19 as
	hPDI: a database of experimental human protein-DNA interactions [My Copy] Bioinformatics (9 November 2009), btp631. by Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian posted to protein-dna interaction human experimental database by neils on 2009-11-10 22:34:00 as along with 2 people roys frohike
	GWIDD: Genome-wide protein docking database [My Copy] Nucl. Acids Res. (9 November 2009), gkp944. by Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser posted to protein-protein modelling genomics docking database by neils on 2009-11-10 22:32:22 as
	MicroRNA-206 Targets notch3, Activates Apoptosis, and Inhibits Tumor Cell Migration and Focus Formation [My Copy] Journal of Biological Chemistry, Vol. 284, No. 46. (13 November 2009), pp. 31921-31927. by Guisheng Song, Yuxia Zhang, Li Wang posted to tumor song09pdf microrna cell cancer by paulschlesinger on 2009-11-10 18:38:35 as along with 3 people and 1 group tonamswish heliopais valeriehilgers microRNA
	Reduced Digestive Vacuolar Accumulation of Chloroquine Is Not Linked to Resistance to Chloroquine Toxicity [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Mynthia Cabrera, Michelle F. Paguio, Changan Xie, Paul D. Roepe posted to resistance reduced choloriquine cabre09pdf accumulation by paulschlesinger on 2009-11-10 02:13:57 as
	BH3 response profiles from neuroblastoma mitochondria predict activity of small molecule Bcl-2 family antagonists [My Copy] Cell Death & Differentiation (06 November 2009) by K. C. Goldsmith, B. J. Lestini, M. Gross, et al.L. Ip, A. Bhumbla, X. Zhang, H. Zhao, X. Liu, M. D. Hogarty posted to profile neuroblastoma goldsm09pdf bh3 antagonists by paulschlesinger on 2009-11-10 02:10:42 as
	Formation of 10−100 nm Size-Controlled Emulsions through a Sub-PIT Cycle [My Copy] Langmuir, Vol. 0, No. 0. (0000) by Kevin Roger, Bernard Cabane, Ulf Olsson posted to roger09pdf pit formation emulsion cycle by paulschlesinger on 2009-11-10 02:05:35 as
	Beyond diffusion-limited aggregation kinetics in microparticle suspensions [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 5. (2009), 051402. by Randall M. Erb, Melissa D. Krebs, Eben Alsberg, Bappaditya Samanta, Vincent M. Rotello, Benjamin B. Yellen posted to particles limit erb09pdf diffusion colloid by paulschlesinger on 2009-11-10 02:00:55 as
	Self-assembly of soft nanoparticles with tunable patchiness [My Copy] Nature Nanotechnology, Vol. 4, No. 11. (30 August 2009), pp. 721-726. by Thomas M. Hermans, A. C. BroerenMaarten, Nikos Gomopoulos, et al.Van D. SchootPaul, H. P. van GenderenMarcel, A. J. M. SommerdijkNico, George Fytas, E. W. Meijer posted to self nanoparticles herman09pdf assembly by paulschlesinger on 2009-11-10 01:59:43 as along with 1 person yse
	Two-Dimensional Difference Gel Electrophoresis (DiGE) Analysis of Plasmas from Dengue Fever Patients [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Lidiane M. Albuquerque, Monique R. O. Trugilho, Alex Chapeaurouge, et al.Patrícia B. Jurgilas, Patrícia T. Bozza, Fernando A. Bozza, Jonas Perales, Ana G. C. Neves-Ferreira posted to virus proteomics plasma human disease dengue 2d-dige by neils on 2009-11-09 22:20:54 as
	Robust-Linear-Model Normalization To Reduce Technical Variability in Functional Protein Microarrays [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Andrea Sboner, Alexander Karpikov, Gengxin Chen, et al.Michael Smith, Mattoon Dawn, Lisa Freeman-Cook, Barry Schweitzer, Mark B. Gerstein posted to statistics protein normalization microarray linear-model by neils on 2009-11-09 22:19:47 as
	Quantification of Membrane Proteins Using Nonspecific Protease Digestions. [My Copy] Journal of proteome research, Vol. 0, No. 0. (9 November 2009) by Maria Bendz, Mirja Carlsson C. Möller, Giorgio Arrigoni, et al.Asa Wåhlander, Roberto Stella, Salvatore Cappadona, Fredrik Levander, Lars Hederstedt, Peter James posted to quantitation proteomics protein protease membrane mass-spec by neils on 2009-11-09 22:13:58 as
	High Diversity of the Viral Community from an Antarctic Lake [My Copy] Science, Vol. 326, No. 5954. (6 November 2009), pp. 858-861. by Alberto Lopez-Bueno, Javier Tamames, David Velazquez, Andres Moya, Antonio Quesada, Antonio Alcami posted to virus metagenomics ecology community antarctic by neils on 2009-11-08 22:22:37 as along with 1 person hughitt1
	T3DB: a comprehensively annotated database of common toxins and their targets [My Copy] Nucl. Acids Res. (6 November 2009), gkp934. by Emilia Lim, Allison Pon, Yannick Djoumbou, et al.Craig Knox, Savita Shrivastava, An C. Guo, Vanessa Neveu, David S. Wishart posted to toxin target database annotation by neils on 2009-11-08 22:20:59 as
	MINT, the molecular interaction database: 2009 update [My Copy] Nucl. Acids Res. (6 November 2009), gkp983. by Arnaud Ceol, Andrew Chatr Aryamontri, Luana Licata, et al.Daniele Peluso, Leonardo Briganti, Livia Perfetto, Luisa Castagnoli, Gianni Cesareni posted to protein-protein mint interaction database by neils on 2009-11-08 22:19:35 as along with 1 person brianb
	STITCH 2: an interaction network database for small molecules and proteins [My Copy] Nucl. Acids Res. (6 November 2009), gkp937. by Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, et al.Monica Campillos, Christian von Mering, Lars J. Jensen, Andreas Beyer, Peer Bork posted to stitch protein-protein protein-ligand network interaction database by neils on 2009-11-08 22:18:17 as
	Accreditation and attribution in data sharing [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 984-985. by Gudmundur A. Thorisson posted to sharing opinion openaccess letter data attribution accreditation by neils on 2009-11-08 22:15:03 as along with 2 people dullhunk gthorisson
	The comprehensive microbial resource [My Copy] Nucl. Acids Res. (5 November 2009), gkp912. by Tanja Davidsen, Erin Beck, Anuradha Ganapathy, et al.Robert Montgomery, Nikhat Zafar, Qi Yang, Ramana Madupu, Phil Goetz, Kevin Galinsky, Owen White, Granger Sutton posted to web microbial genomics database by neils on 2009-11-08 22:12:40 as
	Generating Multiple Solutions for Mixed Integer Programming Problems [My Copy] Integer Programming and Combinatorial Optimization (2007), pp. 280-294. by Emilie Danna, Mary Fenelon, Zonghao Gu, Roland Wunderling posted to programming nmr linear integer diversity assignments by apaydin on 2009-11-08 10:43:29 as
	Experiments concerning sequential versus simultaneous maximization of objective function and distance [My Copy] Journal of Heuristics, Vol. 14, No. 6. (1 December 2008), pp. 613-625. by Peter Greistorfer, Arne Løkketangen, Stefan Voß, David Woodruff posted to programming linear integer diversity by apaydin on 2009-11-08 10:36:47 as along with 1 person and 1 group nojhan Optimization
	Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Nurit Haspel, Brian V. Geisbrecht, John Lambris, Lydia Kavraki posted to multiscale energy_landscape by apaydin on 2009-11-08 08:16:51 as
	PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2743-2744. by T. Aleksiev, R. Potestio, F. Pontiggia, S. Cozzini, C. Micheletti posted to rigidity protein_structure by apaydin on 2009-11-08 07:58:36 as along with 1 person and 1 group oteri Structural Biology Group TorVergata
	Structure-Based Predictive Models for Allosteric Hot Spots [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000531. by Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell posted to allostery by apaydin on 2009-11-08 07:55:47 as along with 3 people and 1 group nickolay klexa barry McCammon
	Structural relationships among proteins with different global topologies and their implications for function annotation strategies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17377-17382. by Donald Petrey, Markus Fischer, Barry Honig posted to structural alignment by apaydin on 2009-11-08 07:45:55 as along with 5 people and 1 group philcarter carlosjavierna TRHvidsten zwang phoenixzxl Orengo Group Journal Picks
	A soft-core Gay--Berne model for the simulation of liquid crystals by Hamiltonian replica exchange [My Copy] The Journal of Chemical Physics, Vol. 131, No. 17. (2009), 174107. by Roberto Berardi, Claudio Zannoni, Juho S. Lintuvuori, Mark R. Wilson posted to replica-exchange coarse-grain by agrossfield on 2009-11-06 20:34:51 as
	Mitochondrial outer-membrane permeabilization and remodelling in apoptosis [My Copy] The International Journal of Biochemistry & Cell Biology, Vol. 41, No. 10. (09 October 2009), pp. 1884-1889. by Alexis Jourdain, Jean-Claude Martinou posted to review remodelling permeabilization outer mitochondrial membrane jourda09pdf apoptosis by paulschlesinger on 2009-11-05 20:11:47 as
	Buffers May Adversely Affect Model Lipid Membranes: A Cautionary Tale [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Teresa Peiró-Salvador, Oscar Ces, Richard H. Templer, Annela M. Seddon posted to peiro09pdf membrane interaction hepes buffer by paulschlesinger on 2009-11-05 19:35:12 as
	Detergent-activated BAX Protein Is a Monomer [My Copy] Journal of Biological Chemistry, Vol. 284, No. 36. (4 September 2009), pp. 23935-23946. by Olena Ivashyna, Ana J. GarcÃa-SÃ¡ez, Jonas Ries, Eric T. Christenson, Petra Schwille, Paul H. Schlesinger posted to ivashy09pdf fcs by paulschlesinger on 2009-11-05 17:51:39 as
	Treatment of Cells with Detergent Activates Caspases and Induces Apoptotic Cell Death [My Copy] Journal of Membrane Biology, Vol. 175, No. 3. (24 June 2000), pp. 181-189. by W. Strupp, G. Weidinger, C. Scheller, et al.R. Ehret, H. Ohnimus, H. Girschick, P. Tas, E. Flory, M. Heinkelein, C. Jassoy posted to treatment strupp00pdf signalling detergent apoptosis by paulschlesinger on 2009-11-04 19:12:28 as

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protein	213
zotero-import	132
membrane	108
structure	84
beta_barrel	42
omp85	37
evolution	32
modelling	32
bioinformatics	31
sam50	22
sam_complex	22
sequence	18
methods	15
nmr	15
protein_engineering	14
alignment	13
bacteria	13
review	13
dna	10
folding	9
mitochondria	9
prediction	9
dynamics	8
import	8
sam35sam37	8
crystallography	7
interactions	7
molbiol	7
mitochondrial	6
outer_membrane	6
software	6
expression	5
function	5
helix	5
homology	5
motif	5
phylogeny	5
purification	5
synthetic_biology	5
biology	4
blast	4
chaperone	4
disorder	4
fat_virus	4
genomics	4
lipid	4
neofunctionalization	4
obesity	4
pore	4
proteins	4
search	4
vdac	4
virus	4
assembly	3
autotransporter	3
comparison	3
computation	3
conformation	3
conservation	3
duplication	3
endosymbiosis	3
hmm	3
network	3
phylogenetics	3
porin	3
secretion	3
similarity	3
tools	3
tpr	3
transport	3
14-3-3	2
a2	2
bilayer	2
binding	2
casein	2
chaperones	2
chemistry	2
cloning	2
collaboration	2
correlated_mutations	2
database	2
domain	2
drug_design	2
electrostatic	2
engineering	2
exon	2
fold	2
gene_duplication	2
gram-negative	2
gram-positive	2
graph	2
intron	2
lattice	2
lipoprotein	2
liposome	2
macpf	2
md	2
mdm10	2
mdm12	2
milk	2
mmm1	2
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peptide	2
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protease	2
redundancy	2
science	2
shuffling	2
stability	2
statistics	2
structural	2
surface	2
taxonomy	2
theory	2
theromdynamics	2
two-partner	2
vectors	2
visualization	2
active	1
adhesins	1
afm	1
algorithm	1
amphiphilicity	1
analysis	1
analytical	1
ap4a	1
apoptosis	1
arabidopsis	1
aspartate	1
backbone	1
beta	1
beta-strand	1
bibliometrics	1
bicelle	1
biofuel	1
biophysics	1
biopython	1
celegans	1
cell_wall	1
channel	1
chemical_shift	1
cheminformatics	1
chloroplasts	1
circuits	1
citation	1
code	1
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cold	1
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complex	1
computational	1
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construct	1
counter	1
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culture	1
databases	1
design	1
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dipole	1
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drug	1
drug-resistance	1
drugs	1
ecoli	1
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encapsulin	1
environment	1
enzyme	1
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er	1
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extremeophile	1
fimbriae	1
gpu	1
gut	1
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hiv-1	1
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hsp70	1
human	1
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ion	1
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of	1
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pilus	1
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plastid	1
portal	1
probability	1
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proteases	1
protein-engineering	1
protein-structure	1
protocols	1
quackery	1
rare_codons	1
refolding	1
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ribosome	1
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tom20	1
toxin	1
two-component	1
ultracentrifugation	1
unfolding	1
urea	1
vault	1
virulence	1
wd_repeat	1
web	1
web_based	1
yeast	1

pansapiens's watchlist [more than 800 articles] Export

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