paszkows's library 99 articles Export

	Evaluation and optimization of clustering in gene expression data analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 10. (10 July 2004), pp. 1535-1545. by A. Fazel Famili, Ganming Liu, Ziying Liu posted to silhouette kmeans gene-expression clustering-evaluation clustering cluster-stability by paszkows on 2009-10-14 10:10:28 as along with 3 people meanerelk jfr dps
	Comparison and meta-analysis of microarray data: from the bench to the computer desk [My Copy] Trends in Genetics, Vol. 19, No. 10. (October 2003), pp. 570-577. by Yves Moreau, Stein Aerts, Bart D. Moor, Bart D. Strooper, Michal Dabrowski posted to review microarray meta-analysis by paszkows on 2009-09-16 11:06:13 as
	Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells. [My Copy] PLoS biology, Vol. 7, No. 7. (7 July 2009), e1000149. by Tibor Kalmar, Chea Lim, Penelope Hayward, et al.Silvia Muñoz-Descalzo, Jennifer Nichols, Jordi Garcia-Ojalvo, Alfonso Martinez Arias posted to stem-cell pluripotency nanog model gene-expression embryonic-stem-cells dynamics by paszkows on 2009-09-01 15:53:19 as along with 2 people and 1 group biomcgary balabu cube_and_beyond
	Statistical methods for analysis of high-throughput RNA interference screens. [My Copy] Nature methods, Vol. 6, No. 8. (30 August 2009), pp. 569-575. by Amanda Birmingham, Laura M. Selfors, Thorsten Forster, et al.David Wrobel, Caleb J. Kennedy, Emma Shanks, Javier Santoyo-Lopez, Dara J. Dunican, Aideen Long, Dermot Kelleher, Queta Smith, Roderick L. Beijersbergen, Peter Ghazal, Caroline E. Shamu posted to gene-selection high-throughput hit-selection normalization review rnai screening by paszkows on 2009-08-03 10:23:25 as along with 3 people ashrafsanju gbloeb guhjy
	Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13350-13355. by Jamie M. Sperger, Xin Chen, Jonathan S. Draper, et al.Jessica E. Antosiewicz, Chris H. Chon, Sunita B. Jones, James D. Brooks, Peter W. Andrews, Patrick O. Brown, James A. Thomson posted to embryonic-stem-cells gene-expression pluripotency sema tumor by paszkows on 2009-07-28 15:32:20 as along with 1 person tonamswish
	Rotation Testing in Gene Set Enrichment Analysis for Small Direct Comparison Experiments [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 8, No. 1. (January 2009) by Guro Dørum, Lars Snipen, Margrete Solheim, Solve Sæbø posted to algorithm enrichment gene-set-enrichment-analysis gsea permutation rotation statistical-testing statistics by paszkows on 2009-07-28 13:33:30 as
	Rotation tests [My Copy] Statistics and Computing, Vol. 15, No. 1. (1 January 2005), pp. 53-60. by Øyvind Langsrud posted to algorithm microarray permutation rotation significance statistical-testing statistics by paszkows on 2009-07-28 13:10:05 as
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to bayesian gene-expression hit-selection linear-model microarray statistical-testing statistics by paszkows on 2009-04-29 10:47:05 as along with 19 people and 1 group schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron isimpson Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	Hit selection with false discovery rate control in genome-scale RNAi screens. [My Copy] Nucleic acids research, Vol. 36, No. 14. (August 2008), pp. 4667-4679. by X. D. Zhang, P. F. Kuan, M. Ferrer, et al.X. Shu, Y. C. Liu, A. T. Gates, P. Kunapuli, E. M. Stec, M. Xu, S. D. Marine, D. J. Holder, B. Strulovici, J. F. Heyse, A. S. Espeseth posted to algorithm bayesian fdr hit-selection rnai screening statistics by paszkows on 2009-04-23 15:33:21 as along with 3 people aviad_work aramesh2 guhjy
	A Genome-Scale RNAi Screen for Oct4 Modulators Defines a Role of the Paf1 Complex for Embryonic Stem Cell Identity [My Copy] (2 April 2009) by Li Ding, Maciej Paszkowski-Rogacz, Anja Nitzsche, et al.Mikolaj M. Slabicki, Anne-Kristin Heninger, Ingrid Vries, Ralf Kittler, Magno Junqueira, Andrej Shevchenko, Herbert Schulz, Norbert Hubner, Michael X. Doss, Agapios Sachinidis, Juergen Hescheler, Roberto Iacone, Konstantinos Anastassiadis, Francis A. Stewart, Teresa M. Pisabarro, Antonio Caldarelli, Ina Poser, Mirko Theis, Frank Buchholz posted to chip-chip enrichment esirna gene-expression high-throughput microarray oct4 paf1 pluripotency rnai screening stem-cell by paszkows on 2009-04-06 16:21:15 as
	Gene set enrichment analysis for non-monotone association and multiple experimental categories [My Copy] BMC Bioinformatics, Vol. 9 (14 November 2008), 481. by Rongheng, Leping Li posted to association-mapping gene-set-enrichment-analysis meta-analysis microarray pathway phenotype statistics by paszkows on 2009-03-20 11:27:45 as along with 7 people jfr heliopais tg150 guhjy imina lptolik barriot
	PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. [My Copy] Nature genetics, Vol. 34, No. 3. (July 2003), pp. 267-273. by Vamsi K. Mootha, Cecilia M. Lindgren, Karl-Fredrik F. Eriksson, et al.Aravind Subramanian, Smita Sihag, Joseph Lehar, Pere Puigserver, Emma Carlsson, Martin Ridderstråle, Esa Laurila, Nicholas Houstis, Mark J. Daly, Nick Patterson, Jill P. Mesirov, Todd R. Golub, Pablo Tamayo, Bruce Spiegelman, Eric S. Lander, Joel N. Hirschhorn, David Altshuler, Leif C. Groop posted to algorithm gene-expression gene-profiling gene-set-enrichment-analysis microarray statistical-testing statistics by paszkows on 2009-03-20 11:20:02 as along with 10 people and 2 groups jperkins yaredo ipark-kaist dragonrez maryee ealloza giovanni shikin magusina heliopais BioinfoCIPF GeschwindLab
	Statistical concerns about the GSEA procedure. [My Copy] Nat Genet, Vol. 36, No. 7. (July 2004) by D. Damian, M. Gorfine posted to gene-set-enrichment-analysis by paszkows on 2009-03-20 11:16:49 as along with 3 people and 1 group ealloza schuylrp heliopais BioinfoCIPF
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to das database hidden-markov-model pfam protein-family proteins web-service web-tool by paszkows on 2009-03-20 11:01:47 as along with 13 people sjcockell badi MarcoAlvarez calderonv katholt urgi guhjy idoerg BioNica bicko niallhaslam gjuggler coela
	Natural concepts in pigeons. [My Copy] Journal of experimental psychology. Animal behavior processes, Vol. 2, No. 4. (October 1976), pp. 285-302. by R. J. Hernstein, D. H. Loveland, C. Cable posted to discrimination mann-whitney-u rank-order-statistic rho by paszkows on 2009-03-19 13:51:03 as
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to algorithm genome-browser hilbert-curve software visualization by paszkows on 2009-03-19 10:12:54 as along with 14 people and 1 group jfr jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz BergmanLab
	Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios [My Copy] Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963. by Andrew G. Clark, Stephen Glanowski, Rasmus Nielsen, et al.Paul D. Thomas, Anish Kejariwal, Melissa A. Todd, David M. Tanenbaum, Daniel Civello, Fu Lu, Brian Murphy, Steve Ferriera, Gary Wang, Xianqgun Zheng, Thomas J. White, John J. Sninsky, Mark D. Adams, Michele Cargill posted to evolution mann-whitney-u mendel nucleotide-substitution panther-database sequence sequence-alignment by paszkows on 2009-03-17 15:54:53 as along with 9 people and 1 group clearbluespring athma provero renewang ejeffery gjuggler hdopazo djkt Ema BioinfoCIPF
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to enrichment review by paszkows on 2009-02-11 14:04:46 as along with 44 people and 2 groups darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Stew inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	Quick and Easy Implementation of the Benjamini-Hochberg Procedure for Controlling the False Positive Rate in Multiple Comparisons [My Copy] JOURNAL OF EDUCATIONAL AND BEHAVIORAL STATISTICS, Vol. 27, No. 1. (1 January 2002), pp. 77-83. by David Thissen, Lynne Steinberg, Daniel Kuang posted to benjamini-hochberg excel fdr multiple-comparisons statistical-testing statistics by paszkows on 2009-02-09 15:11:36 as
	GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists [My Copy] BMC Bioinformatics, Vol. 10 (03 February 2009), 48. by Eran, Zohar Yakhini posted to enrichment gene-ontology gene-set-enrichment-analysis high-throughput hypergeometric statistical-testing statistics web-tool by paszkows on 2009-02-04 16:09:30 as along with 8 people and 1 group Effie guhjy RamuAnandakrishnan kshameer renatomilani grahamc cmzmasek jmeppley NaCTeM
	STRING: a database of predicted functional associations between proteins [My Copy] Nucleic Acids Res, Vol. 31, No. 1., 258-61. by C. von Mering, M. Huynen, D. Jaeggi, S. Schmidt, P. Bork, B. Snel posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	Robust statistical methods for hit selection in RNA interference high-throughput screening experiments [My Copy] Pharmacogenomics, Vol. 7, No. 3., 299-309. by X. D. Zhang, X. C. Yang, N. Chung, et al.A. Gates, E. Stec, P. Kunapuli, D. J. Holder, M. Ferrer, A. S. Espeseth posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue., D479-83. by D. Sims, B. Bursteinas, Q. Gao, M. Zvelebil, B. Baum posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	BioGRID: a general repository for interaction datasets [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue., D535-9. by C. Stark, B. J. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	Genome browsing with Ensembl: a practical overview [My Copy] Brief Funct Genomic Proteomic, Vol. 6, No. 3., 202-19. by G. Spudich, X. M. Fernandez-Suarez, E. Birney posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	SCOP: a structural classification of proteins database for the investigation of sequences and structures [My Copy] J Mol Biol, Vol. 247, No. 4., 536-40. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	A resource for large-scale RNA-interference-based screens in mammals [My Copy] Nature, Vol. 428, No. 6981., 427-31. by P. J. Paddison, J. M. Silva, D. S. Conklin, et al.M. Schlabach, M. Li, S. Aruleba, V. Balija, A. O'Shaughnessy, L. Gnoj, K. Scobie, K. Chang, T. Westbrook, M. Cleary, R. Sachidanandam, W. R. Mccombie, S. J. Elledge, G. J. Hannon posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies [My Copy] Nat Methods, Vol. 4, No. 4., 337-44. by R. Kittler, V. Surendranath, A. K. Heninger, et al.M. Slabicki, M. Theis, G. Putz, K. Franke, A. Caldarelli, H. Grabner, K. Kozak, J. Wagner, E. Rees, B. Korn, C. Frenzel, C. Sachse, B. Sonnichsen, J. Guo, J. Schelter, J. Burchard, P. S. Linsley, A. L. Jackson, B. Habermann, F. Buchholz posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:03 as
	An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division [My Copy] Nature, Vol. 432, No. 7020., 1036-40. by R. Kittler, G. Putz, L. Pelletier, et al.I. Poser, A. K. Heninger, D. Drechsel, S. Fischer, I. Konstantinova, B. Habermann, H. Grabner, M. L. Yaspo, H. Himmelbauer, B. Korn, K. Neugebauer, M. T. Pisabarro, F. Buchholz posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs [My Copy] Cell Cycle, Vol. 4, No. 4., 564-7. by R. Kittler, F. Buchholz posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	Genome-scale RNAi profiling of cell division in human tissue culture cells [My Copy] Nat Cell Biol, Vol. 9, No. 12., 1401-12. by R. Kittler, L. Pelletier, A. K. Heninger, et al.M. Slabicki, M. Theis, L. Miroslaw, I. Poser, S. Lawo, H. Grabner, K. Kozak, J. Wagner, V. Surendranath, C. Richter, W. Bowen, A. L. Jackson, B. Habermann, A. A. Hyman, F. Buchholz posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification [My Copy] Nucleic Acids Res, Vol. 31, No. 1., 334-41. by P. D. Thomas, A. Kejariwal, M. J. Campbell, et al.H. Mi, K. Diemer, N. Guo, I. Ladunga, B. Ulitsky-Lazareva, A. Muruganujan, S. Rabkin, J. A. Vandergriff, O. Doremieux posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	RNA interference: gene silencing in the fast lane [My Copy] Semin Cancer Biol, Vol. 13, No. 4., 259-65. by R. Kittler, F. Buchholz posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	Enrichment analysis in high-throughput genomics - accounting for dependency in the NULL [My Copy] Brief Bioinform, Vol. 8, No. 2., 71-7. by D. L. Gold, K. R. Coombes, J. Wang, B. Mallick posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	Taverna: a tool for building and running workflows of services [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue., W729-32. by D. Hull, K. Wolstencroft, R. Stevens, et al.C. Goble, M. R. Pocock, P. Li, T. Oinn posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	Reactome: a knowledge base of biologic pathways and processes [My Copy] Genome Biol, Vol. 8, No. 3. (2007), R39. by I. Vastrik, P. D'Eustachio, E. Schmidt, et al.G. Joshi-Tope, G. Gopinath, D. Croft, B. de Bono, M. Gillespie, B. Jassal, S. Lewis, L. Matthews, G. Wu, E. Birney, L. Stein posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	UniProtJAPI: a remote API for accessing UniProt data [My Copy] Bioinformatics, Vol. 24, No. 10., 1321-2. by S. Patient, D. Wieser, M. Kleen, E. Kretschmann, Jesus, R. Apweiler posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	EnsMart: a generic system for fast and flexible access to biological data [My Copy] Genome Res, Vol. 14, No. 1., 160-9. by A. Kasprzyk, D. Keefe, D. Smedley, et al.D. London, W. Spooner, C. Melsopp, M. Hammond, P. Rocca-Serra, T. Cox, E. Birney posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	dictyBase, the model organism database for Dictyostelium discoideum [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue., D423-7. by R. L. Chisholm, P. Gaudet, E. M. Just, et al.K. E. Pilcher, P. Fey, S. N. Merchant, W. A. Kibbe posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	WormBase: better software, richer content [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue., D475-8. by E. M. Schwarz, I. Antoshechkin, C. Bastiani, et al.T. Bieri, D. Blasiar, P. Canaran, J. Chan, N. Chen, W. J. Chen, P. Davis, T. J. Fiedler, L. Girard, T. W. Harris, E. E. Kenny, R. Kishore, D. Lawson, R. Lee, H. M. Muller, C. Nakamura, P. Ozersky, A. Petcherski, A. Rogers, W. Spooner, M. A. Tuli, K. Van Auken, D. Wang, R. Durbin, J. Spieth, L. D. Stein, P. W. Sternberg posted to file-import-09-02-02 by paszkows on 2009-02-02 12:49:02 as
	BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3439-3440. by Steffen Durinck, Yves Moreau, Arek Kasprzyk, et al.Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber posted to bioconductor biomart das database r software web-service web-tool by paszkows on 2009-02-02 12:36:41 as along with 10 people jfr taroleo renatomilani brdwilde druvus wenhui dullhunk asddd natstreet guhjy
	The distributed annotation system. [My Copy] BMC bioinformatics, Vol. 2, No. 1. (2001) by R. D. Dowell, R. M. Jokerst, A. Day, S. R. Eddy, L. Stein posted to das software web-service by paszkows on 2009-02-02 12:34:42 as along with 7 people fisherp daforerog taroleo nlapalu niallhaslam moborg dullhunk
	WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by Nansheng Chen, Todd W. Harris, Igor Antoshechkin, et al.Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K. Chen, Wen J. Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M. Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M. Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W. Sternberg, Lincoln D. Stein posted to caenorhabditis-elegans database web-tool by paszkows on 2009-02-02 12:32:59 as along with 8 people rshe biomcgary thegoose2 rklancer nuke2005 maryee GustavoLacerda tharris
	Enzymatically prepared RNAi libraries [My Copy] Nature Methods, Vol. 3, No. 9. (2006), pp. 696-700. by Frank Buchholz, Ralf Kittler, Mikolaj Slabicki, Mirko Theis posted to esirna high-throughput rnai by paszkows on 2009-02-02 12:30:28 as along with 5 people and 3 groups guhjy tardigrade dchughes Fritz janasont G4ID neurolit Genetics-of-Gambling
	The BioGRID Interaction Database: 2008 update. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by Bobby-Joe J. Breitkreutz, Chris Stark, Teresa Reguly, et al.Lorrie Boucher, Ashton Breitkreutz, Michael Livstone, Rose Oughtred, Daniel H. Lackner, Jürg Bähler, Valerie Wood, Kara Dolinski, Mike Tyers posted to database protein-interaction web-tool by paszkows on 2009-02-02 12:28:55 as along with 3 people daforerog raiyar guhjy
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to gene-ontology web-tool by paszkows on 2009-02-02 12:26:32 as along with 74 people and 7 groups Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to algorithm enrichment gene-expression gene-profiling gene-selection gene-set-enrichment-analysis gsea significance statistical-testing statistics by paszkows on 2009-01-29 10:07:26 as along with 45 people and 4 groups gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	A novel meta-analysis method exploiting consistency of high-throughput experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 5. (1 March 2009), pp. 636-642. by Satwik Rajaram posted to internal-consistency meta-analysis software by paszkows on 2009-01-29 10:00:16 as along with 5 people daforerog jfr rdiaz dswan Yanno
	KEA: Kinase Enrichment Analysis [My Copy] Bioinformatics (28 January 2009), btp026. by Alexander Lachmann, Avi Ma'ayan posted to enrichment kinase web-tool by paszkows on 2009-01-29 09:57:00 as along with 4 people jfr guhjy Yanno renatomilani
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to algorithm bioconductor fdr microarray r significance statistical-testing statistics by paszkows on 2009-01-29 09:50:59 as along with 12 people and 1 group shikin jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani Bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/paszkows

Result page: 1 2 Next

statistics	40
file-import-09-02-02	20
gene-expression	19
microarray	18
web-tool	18
enrichment	16
gene-ontology	14
statistical-testing	14
high-throughput	12
software	12
algorithm	11
go	11
fdr	9
gene-set-enrichment-analysis	9
database	8
r	7
meta-analysis	6
review	6
rnai	6
screening	6
significance	6
web-service	6
clustering	5
contingency-table	5
gsea	5
pipeline	5
das	4
gene-selection	4
normalization	4
permutation	4
pluripotency	4
similarity	4
validation	4
association-mapping	3
bioconductor	3
gene-profiling	3
hit-selection	3
interrater-agreement	3
pathway	3
phenotype	3
standard	3
stem-cell	3
time-course	3
bayesian	2
categorical-data-analysis	2
chip-chip	2
cohens-kappa	2
community	2
distance	2
embryonic-stem-cells	2
esirna	2
framework	2
genome-browser	2
least-squares	2
linear-model	2
mann-whitney-u	2
pca	2
principal-components-analysis	2
proteins	2
qtl	2
rotation	2
semantic-similarity	2
sequence	2
sequence-alignment	2
variable-weighting	2
visualization	2
yules-y	2
alignment	1
benjamini-hochberg	1
biomart	1
caenorhabditis-elegans	1
classification	1
clustering-evaluation	1
cluster-stability	1
correlation	1
discrimination	1
dissimilarity	1
dynamic-programming	1
dynamics	1
ebi	1
e-learning	1
evolution	1
excel	1
format	1
genotype	1
goa	1
heat-transfer	1
hidden-markov-model	1
hierarchical-clustering	1
hilbert-curve	1
hypergeometric	1
information	1
internal-consistency	1
kinase	1
kmeans	1
lexical-taxonomy	1
local-alignment	1
mendel	1
microelectronics	1
model	1
monte-carlo	1
multiple-comparisons	1
multivariate-association	1
nanog	1
nucleotide-substitution	1
oct4	1
odds-ratio	1
ora	1
paf1	1
panther-database	1
pfam	1
protein-family	1
protein-interaction	1
rank-order-statistic	1
relative-difference	1
repeatability	1
rho	1
robust-mean	1
sam	1
scop	1
scowlp	1
sema	1
silhouette	1
simulation	1
snp	1
structure	1
tumor	1
ultrametric-trees	1
variable-importance	1
web-20	1
weighted-euclidean	1

paszkows's library 99 articles Export

paszkows's tags