paszkows's microarray [18 articles] Export

Recent papers added to paszkows's library classified by the tag microarray. You can also see everyone's microarray.

	Comparison and meta-analysis of microarray data: from the bench to the computer desk [My Copy] Trends in Genetics, Vol. 19, No. 10. (October 2003), pp. 570-577. by Yves Moreau, Stein Aerts, Bart D. Moor, Bart D. Strooper, Michal Dabrowski posted to review microarray meta-analysis by paszkows on 2009-09-16 11:06:13 as
	Rotation tests [My Copy] Statistics and Computing, Vol. 15, No. 1. (1 January 2005), pp. 53-60. by Øyvind Langsrud posted to algorithm microarray permutation rotation significance statistical-testing statistics by paszkows on 2009-07-28 13:10:05 as
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to bayesian gene-expression hit-selection linear-model microarray statistical-testing statistics by paszkows on 2009-04-29 10:47:05 as along with 19 people and 1 group schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron isimpson Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	A Genome-Scale RNAi Screen for Oct4 Modulators Defines a Role of the Paf1 Complex for Embryonic Stem Cell Identity [My Copy] (2 April 2009) by Li Ding, Maciej Paszkowski-Rogacz, Anja Nitzsche, et al.Mikolaj M. Slabicki, Anne-Kristin Heninger, Ingrid Vries, Ralf Kittler, Magno Junqueira, Andrej Shevchenko, Herbert Schulz, Norbert Hubner, Michael X. Doss, Agapios Sachinidis, Juergen Hescheler, Roberto Iacone, Konstantinos Anastassiadis, Francis A. Stewart, Teresa M. Pisabarro, Antonio Caldarelli, Ina Poser, Mirko Theis, Frank Buchholz posted to chip-chip enrichment esirna gene-expression high-throughput microarray oct4 paf1 pluripotency rnai screening stem-cell by paszkows on 2009-04-06 16:21:15 as
	Gene set enrichment analysis for non-monotone association and multiple experimental categories [My Copy] BMC Bioinformatics, Vol. 9 (14 November 2008), 481. by Rongheng, Leping Li posted to association-mapping gene-set-enrichment-analysis meta-analysis microarray pathway phenotype statistics by paszkows on 2009-03-20 11:27:45 as along with 7 people jfr heliopais tg150 guhjy imina lptolik barriot
	PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. [My Copy] Nature genetics, Vol. 34, No. 3. (July 2003), pp. 267-273. by Vamsi K. Mootha, Cecilia M. Lindgren, Karl-Fredrik F. Eriksson, et al.Aravind Subramanian, Smita Sihag, Joseph Lehar, Pere Puigserver, Emma Carlsson, Martin Ridderstråle, Esa Laurila, Nicholas Houstis, Mark J. Daly, Nick Patterson, Jill P. Mesirov, Todd R. Golub, Pablo Tamayo, Bruce Spiegelman, Eric S. Lander, Joel N. Hirschhorn, David Altshuler, Leif C. Groop posted to algorithm gene-expression gene-profiling gene-set-enrichment-analysis microarray statistical-testing statistics by paszkows on 2009-03-20 11:20:02 as along with 10 people and 2 groups jperkins yaredo ipark-kaist dragonrez maryee ealloza giovanni shikin magusina heliopais BioinfoCIPF GeschwindLab
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to algorithm bioconductor fdr microarray r significance statistical-testing statistics by paszkows on 2009-01-29 09:50:59 as along with 12 people and 1 group shikin jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani Bioinformatics
	Repeatability of published microarray gene expression analyses. [My Copy] Nature genetics, Vol. 41, No. 2. (28 February 2009), pp. 149-155. by John P. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedin C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted to community gene-expression microarray repeatability validation by paszkows on 2009-01-28 14:51:44 as along with 21 people and 1 group hzoltan heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt Roswell Cancer Crosstalk
	Regularized gene selection in cancer microarray meta-analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (01 January 2009), 1. by Shuangge Ma, Jian Huang posted to gene-expression gene-selection meta-analysis microarray normalization statistics by paszkows on 2009-01-07 12:01:36 as along with 9 people and 1 group Zephyrus daforerog lwaldron jfr rdiaz guhjy dswan taguchi nuin Bioinformatics
	GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Keller, C. Backes, M. Al-Awadhi, et al.A. Gerasch, J. Küntzer, O. Kohlbacher, M. Kaufmann, H. P. Lenhof posted to enrichment gene-expression gene-ontology gene-set-enrichment-analysis gsea high-throughput meta-analysis microarray ora pathway pipeline web-tool by paszkows on 2008-12-22 10:46:29 as along with 7 people and 1 group guhjy jfr nuin dswan renatomilani druvus reyez Bioinformatics
	Gene profiling for determining pluripotent genes in a time course microarray experiment. [My Copy] Biostatistics (Oxford, England) (18 June 2008) by J Tuke, G F V F. Glonek, P J J. Solomon posted to gene-expression gene-profiling linear-model microarray pluripotency stem-cell time-course by paszkows on 2008-12-15 11:14:06 as along with 3 people mayercd lptolik guhjy
	GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2798-2800. by Yuelin Zhu, Sean Davis, Robert Stephens, Paul S. Meltzer, Yidong Chen posted to database gene-expression microarray r software web-tool by paszkows on 2008-10-08 09:00:18 as along with 5 people daforerog giovenko jfr dswan guhjy
	A probabilistic generative model for GO enrichment analysis [My Copy] Nucl. Acids Res. (1 August 2008), gkn434. by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J. Nau, Ziv Bar-Joseph posted to algorithm enrichment fdr gene-expression gene-ontology go microarray statistics by paszkows on 2008-10-02 16:24:57 as along with 10 people jfr guhjy inesdesantiago yaredo rdiaz barriot waszak tmmurali raiyar jandot
	MergeMaid: R tools for merging and cross-study validation of gene expression data. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3 (2004) by L. Cope, X. Zhong, E. Garrett, G. Parmigiani posted to gene-expression meta-analysis microarray r statistics validation by paszkows on 2008-09-16 11:06:06 as
	Significance analysis of microarrays applied to the ionizing radiation response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121. by V. G. Tusher, R. Tibshirani, G. Chu posted to fdr gene-expression microarray relative-difference sam significance statistics by paszkows on 2008-09-02 09:29:49 as along with 19 people jperkins ipark-kaist bertelsen daforerog marboe roys ihpark bassene frohike miguel jen_drake gpalidwor olympos ccr incovoma ugengma shikin askrajiv renatomilani
	A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4280-4288. by Yang Xie, Wei Pan, Arkady B. Khodursky posted to fdr microarray permutation statistics by paszkows on 2008-09-02 09:16:18 as along with 6 people and 8 groups rdiaz klaudius shantanu dquest shigepong shikin structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Supervised Principal Component Analysis for Gene Set Enrichment of Microarray Data with Continuous or Survival Outcomes [My Copy] Bioinformatics (27 August 2008), btn458. by Xi Chen, Lily Wang, Jonathan D. Smith, Bing Zhang posted to enrichment microarray pca principal-components-analysis statistics by paszkows on 2008-08-28 10:09:06 as along with 5 people guhjy jfr druvus ptrobajo aconesa
	Principal components analysis to summarize microarray experiments: application to sporulation time series. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2000), pp. 455-466. by S. Raychaudhuri, J. M. Stuart, R. B. Altman posted to gene-expression microarray pca principal-components-analysis statistics time-course by paszkows on 2008-07-10 11:01:05 as along with 1 person jmeppley

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statistics	40
file-import-09-02-02	20
gene-expression	19
web-tool	18
microarray	18
enrichment	16
gene-ontology	14
statistical-testing	14
software	12
high-throughput	12
algorithm	11
go	11
gene-set-enrichment-analysis	9
fdr	9
database	8
r	7
meta-analysis	6
rnai	6
significance	6
review	6
screening	6
web-service	6
clustering	5
pipeline	5
gsea	5
contingency-table	5
normalization	4
pluripotency	4
permutation	4
das	4
gene-selection	4
validation	4
similarity	4
interrater-agreement	3
bioconductor	3
association-mapping	3
pathway	3
standard	3
stem-cell	3
gene-profiling	3
hit-selection	3
phenotype	3
time-course	3
principal-components-analysis	2
variable-weighting	2
pca	2
distance	2
categorical-data-analysis	2
visualization	2
qtl	2
chip-chip	2
mann-whitney-u	2
bayesian	2
genome-browser	2
least-squares	2
rotation	2
linear-model	2
sequence	2
cohens-kappa	2
semantic-similarity	2
sequence-alignment	2
embryonic-stem-cells	2
proteins	2
esirna	2
framework	2
community	2
yules-y	2
scowlp	1
weighted-euclidean	1
model	1
paf1	1
ebi	1
genotype	1
microelectronics	1
alignment	1
panther-database	1
excel	1
scop	1
rho	1
goa	1
tumor	1
local-alignment	1
hypergeometric	1
ultrametric-trees	1
dynamics	1
relative-difference	1
biomart	1
evolution	1
clustering-evaluation	1
silhouette	1
protein-interaction	1
web-20	1
correlation	1
oct4	1
rank-order-statistic	1
monte-carlo	1
hidden-markov-model	1
lexical-taxonomy	1
robust-mean	1
e-learning	1
caenorhabditis-elegans	1
heat-transfer	1
hilbert-curve	1
dynamic-programming	1
format	1
structure	1
internal-consistency	1
variable-importance	1
multivariate-association	1
kmeans	1
benjamini-hochberg	1
ora	1
discrimination	1
odds-ratio	1
mendel	1
cluster-stability	1
nanog	1
multiple-comparisons	1
snp	1
repeatability	1
protein-family	1
hierarchical-clustering	1
nucleotide-substitution	1
classification	1
simulation	1
sam	1
sema	1
dissimilarity	1
pfam	1
kinase	1
information	1

paszkows's microarray [18 articles] Export

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