paulschlesinger's analysis [38 articles] Export

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	Detection of multiscale pockets on protein surfaces using mathematical morphology [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Takeshi Kawabata posted to surface simulation protein pockets multiscale kawab09pdf binding analysis by paulschlesinger on 2009-11-26 00:06:34 as
	Expressing and functional analysis of mammalian apoptotic regulators in yeast [My Copy] Cell Death & Differentiation (13 November 2009) by M. T. Greenwood, P. Ludovico posted to yeast regulators greenw09pdf functional expression apoptotic analysis by paulschlesinger on 2009-11-14 01:33:54 as
	X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution [My Copy] Quarterly Reviews of Biophysics, Vol. 40, No. 03. (14 August 2007), pp. 191-285. by Christopher D. Putnam, Michal Hammel, Greg L. Hura, John A. Tainer posted to x-ray small scattering saxs putnam07pdf angle analysis by paulschlesinger on 2009-10-09 18:51:32 as along with 4 people dgront bratwurst birte ColumbusLabs
	Normal Mode Analysis of Biomolecular Structures: Functional Mechanisms of Membrane Proteins [My Copy] Chemical Reviews, Vol. 0, No. 0. (0000) by Ivet Bahar, Timothy R. Lezon, Ahmet Bakan, Indira H. Shrivastava posted to proteins normal mode membranes bahar09pdf analysis by paulschlesinger on 2009-09-29 00:51:29 as
	Protein dynamics from single-molecule fluorescence intensity correlation functions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 9. (2009), 095102. by Irina V. Gopich, Daniel Nettels, Benjamin Schuler, Attila Szabo posted to transfer resonance intensity gopich09pdf fcs diffusion analysis by paulschlesinger on 2009-09-03 02:00:30 as along with 1 person doktornoe
	Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data [My Copy] PLoS ONE, Vol. 4, No. 8. (26 August 2009), e6522. by Jason W. Locasale, Alejandro Wolf-Yadlin posted to signalling network maximum locas09pdf entropy analysis by paulschlesinger on 2009-08-27 01:42:22 as along with 1 person frohike
	Multiple regimes of diffusion [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 1. (2009), 011139. by B. Mehlig, M. Wilkinson, V. Bezuglyy, K. Gustavsson, K. Nakamura posted to analysis assymptotes diffusion multiple regeimes theoretial by paulschlesinger on 2009-08-04 01:40:04 as
	Nature of the protein universe [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 11079-11084. by Michael Levitt posted to analysis characteristics domain levitt09pdf protein universe by paulschlesinger on 2009-07-08 01:45:57 as along with 9 people and 1 group martainn pmung ldiambra VGreiff carlosjavierna philcarter TRHvidsten apaydin renatomilani Orengo Group Journal Picks
	Reconstitution of Rab- and SNARE-dependent membrane fusion by synthetic endosomes [My Copy] Nature, Vol. 459, No. 7250. (25 June 2009), pp. 1091-1097. by Takeshi Ohya, Marta Miaczynska, Unal Coskun, et al.Barbara Lommer, Anja Runge, David Drechsel, Yannis Kalaidzidis, Marino Zerial posted to analysis fusion membrane ohya09pdf reconstitution by paulschlesinger on 2009-06-26 01:16:25 as along with 1 person jtownson
	Impact of External Stimuli and Cell Micro-Architecture on Intracellular Transport States [My Copy] ChemPhysChem, Vol. 9999, No. 9999. (2009), NA. by Jean Mahowald, Delphine Arcizet, Doris Heinrich posted to analysis intracelluar mahow09pdf transport by paulschlesinger on 2009-06-10 01:22:33 as
	Entropy of continuous Markov processes in local thermal equilibrium [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 5. (2009), 051123. by Miguel Hoyuelos posted to analysis bolstmann equilibirum processes thermal by paulschlesinger on 2009-06-04 00:37:52 as
	BlockMaster: Partitioning Protein Kinase Structures Using Normal-Mode Analysis† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 26. (2 July 2009), pp. 7528-7534. by Marina Shudler, Masha Y. Niv posted to analysis kinase mode normal partitioning protein structure by paulschlesinger on 2009-06-03 00:54:11 as along with 3 people and 1 group carlosjavierna barry sobolevnrm McCammon
	Characterizing the resistance generated by a molecular bond as it is forcibly separated [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8818-8823. by L. B. Freund posted to analysis bond freun09pdf molecular separation by paulschlesinger on 2009-06-03 00:46:27 as along with 2 people sobolevnrm bobturner
	Single-molecule mechanics: New insights from the escape-over-a-barrier problem [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8795-8796. by Olga K. Dudko posted to analysis dudko09pdf escape molecule single by paulschlesinger on 2009-06-03 00:40:31 as
	Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes [My Copy] Cell Death and Differentiation, Vol. aop, No. current. (17 April 2009) by L. Galluzzi, S. A. Aaronson, J. Abrams, et al.E. S. Alnemri, D. W. Andrews, E. H. Baehrecke, N. G. Bazan, M. V. Blagosklonny, K. Blomgren, C. Borner, D. E. Bredesen, C. Brenner, M. Castedo, J. A. Cidlowski, A. Ciechanover, G. M. Cohen, V. De Laurenzi, R. De Maria, M. Deshmukh, B. D. Dynlacht, W. S. El-Deiry, R. A. Flavell, S. Fulda, C. Garrido, P. Golstein, M. L. Gougeon, D. R. Green, H. Gronemeyer, G. Hajnóczky, J. M. Hardwick, M. O. Hengartner, H. Ichijo, M. Jäättel￤, O. Kepp, A. Kimchi, D. J. Klionsky, R. A. Knight, S. Kornbluth, S. Kumar, B. Levine, S. A. Lipton, E. Lugli, F. Madeo, W. Malorni, J-Cw Marine, S. J. Martin, J. P. Medema, P. Mehlen, G. Melino, U. M. Moll, E. Morselli, S. Nagata, D. W. Nicholson, P. Nicotera, G. Nuñez, M. Oren, J. Penninger, S. Pervaiz, M. E. Peter, M. Piacentini, J. H. M. Prehn, H. Puthalakath, G. A. Rabinovich, R. Rizzuto, C. M. P. Rodrigues, D. C. Rubinsztein, T. Rudel, L. Scorrano, H. U. Simon, H. Steller, J. Tschopp, Y. Tsujimoto, P. Vandenabeele, I. Vitale, K. H. Vousden, R. J. Youle, J. Yuan, B. Zhivotovsky, G. Kroemer posted to analysis apoptosis cell eukayotic galuzzi09pdf by paulschlesinger on 2009-04-21 01:25:08 as along with 1 person guhjy
	Modelling biological complexity: a physical scientist's perspective [My Copy] Journal of The Royal Society Interface, Vol. 2, No. 4. (22 September 2005), pp. 267-280. by Peter V. Coveney, Philip W. Fowler posted to analysis behavior coven05pdf mesotropic scale systems by paulschlesinger on 2009-03-11 16:18:14 as along with 6 people bertelsen jonathancooper Scis0000002 PaulSherwood6 jjray danscott
	The middle way [My Copy] Proceedings of the National Academy of Sciences, Vol. 97, No. 1. (4 January 2000), pp. 32-37. by R. B. Laughlin, David Pines, Joerg Schmalian, Branko P. Stojkovic, Peter Wolynes posted to analysis behavior luaghl00pdf mesotropic by paulschlesinger on 2009-03-11 16:10:43 as along with 4 people and 1 group sobolevnrm Elena_Zubova madhadron samjlord baker-group
	A new approach for fluorescence correlation spectroscopy (FCS) based immunoassays [My Copy] Journal of Biotechnology, Vol. 107, No. 2. (22 January 2004), pp. 185-192. by O. Mayboroda posted to analysis correlation fcs fluorescence maybor04pdf spectroscopy by paulschlesinger on 2009-02-17 19:01:29 as
	Macrophage ion currents are fit by a fractional model and therefore are a time series with memory [My Copy] European Biophysics Journal by Darío Domínguez, Mariela Marín, Marcela Camacho posted to analysis currents doming09pdf ion macrophage by paulschlesinger on 2009-01-13 01:10:25 as
	Aggregation of the Naturally Occurring Lipopeptide, Surfactin, at Interfaces and in Solution: An Unusual Type of Surfactant?† [My Copy] Langmuir, Vol. 0, No. 0. (0000) by Hsin-Hui Shen, Robert K. Thomas, Chien-Yen Chen, Richard C. Darton, Simon C. Baker, Jeffrey Penfold posted to aggregation analysis neutron shen09pdf surfactant by paulschlesinger on 2009-01-13 00:54:38 as
	Structural analysis of ion selectivity in the NaK channel [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 1. (21 December 2008), pp. 35-41. by Amer Alam, Youxing Jiang posted to alam09apdf analysis channel ion k na of selectivity structural by paulschlesinger on 2009-01-09 01:09:45 as
	Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation [My Copy] Science, Vol. 322, No. 5906. (28 November 2008), pp. 1365-1368. by Jorg Gsponer, Matthias E. Futschik, Sarah A. Teichmann, Madan M. Babu posted to analysis gspond08pdf proteins systematics unstructured by paulschlesinger on 2008-11-28 22:36:47 as along with 3 people guhjy cactus jbhiatt
	Advances in structure analysis using small-angle scattering in solution [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 5. (01 October 2002), pp. 654-660. by D. Svergun posted to analysis angle scattering small strucutre sverg02pdf x-ray by paulschlesinger on 2008-11-06 17:55:58 as
	FRET analysis of domain formation and properties in complex membrane systems [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (30 October 2008) by L. Loura, R. Dealmeida, L. Silva, M. Prieto posted to analysis complex domain formation fret loura08pdf membrane by paulschlesinger on 2008-10-31 23:17:28 as
	Measuring binding kinetics of surface-bound molecules using the surface plasmon resonance technique [My Copy] Analytical Biochemistry, Vol. 377, No. 2. (15 June 2008), pp. 195-201. by B. Li, J. Chen, M. Long posted to analysis binding kinetic li08pdf plasmon spr by paulschlesinger on 2008-10-23 22:27:22 as
	Lipid lateral diffusion and membrane heterogeneity [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript by Göran Lindblom, Greger Orädd posted to analysis diffusion heterogenity lateral lindblo08pdf membrane nmr by paulschlesinger on 2008-09-09 22:37:08 as
	Quantitative reevaluation of the redox active sites of crystalline bovine heart cytochrome c oxidase. [My Copy] The Journal of biological chemistry, Vol. 274, No. 47. (19 November 1999), pp. 33403-33411. by M. Mochizuki, H. Aoyama, K. Shinzawa-Itoh, T. Usui, T. Tsukihara, S. Yoshikawa posted to analysis cytochrome redox spectra by paulschlesinger on 2008-08-27 01:07:01 as
	The utility of molecular dynamics simulations for understanding site-directed mutagenesis of glycine residues in biotin carboxylase [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Tee Bordelon, Sten, Grover L. Waldrop posted to analysis bordel08pdf glycine mutation simulation by paulschlesinger on 2008-08-20 01:00:25 as
	Kinetic Reconstruction of the Free-Energy Landscape [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 35. (4 September 2008), pp. 11060-11063. by Jan Wedekind, David Reguera posted to analysis data free-energy landscape simulation wedek08pdf by paulschlesinger on 2008-08-16 00:38:31 as along with 3 people Diego_Prada janwedekind michaelbussmann
	Coarse-Grained Simulation Studies of Peptide-Induced Pore Formation☆ [My Copy] Biophysical Journal, Vol. 95, No. 9. (01 November 2008), pp. 4163-4173. by G. Illya, M. Deserno posted to analysis formation illya08pdf mechanisn peptide pore simulation by paulschlesinger on 2008-08-12 23:12:18 as along with 2 people edws agrossfield
	In vivo mitochondrial oxygen tension measured by a delayed fluorescence lifetime technique [My Copy] Biophys. J. (8 August 2008), biophysj.107.126094. by Egbert G. Mik, Tanja Johannes, Coert J. Zuurbier, et al.Andre Heinen, Judith H. Houben-Weerts, Gianmarco M. Balestra, Jan Stap, Johan F. Beek, Can Ince posted to analysis mitochondria oxygen tension by paulschlesinger on 2008-08-12 22:32:20 as
	Unravelling the Bcl-2 Apoptosis Code with a Simple Model System [My Copy] PLoS Biology, Vol. 6, No. 6. (1 June 2008), e154. by Gorka Basañez, Marie J. Hardwick posted to analysis bcl-2 interactions by paulschlesinger on 2008-06-21 00:16:33 as
	Cholesterol Is Found To Reside in the Center of a Polyunsaturated Lipid Membrane [My Copy] Biochemistry (11 June 2008) by Thad A. Harroun, John Katsaras, Stephen R. Wassall posted to analysis beam cholesterol deuterated neutron by paulschlesinger on 2008-06-13 01:00:08 as along with 2 people and 1 group anniegitomer sobolevnrm baker-group
	A Flexible Approach to the Calculation of Resonance Energy Transfer Efficiency between Multiple Donors and Acceptors in Complex Geometries [My Copy] Biophysical Journal, Vol. 89, No. 6. (1 December 2005), pp. 3822-3836. by B. Corry posted to analysis complex fret signal simulation by paulschlesinger on 2008-06-12 23:11:45 as along with 2 people quanwang waszak
	An analytic solution to the Forster energy transfer problem in two dimensions. [My Copy] Biophys. J., Vol. 28, No. 2. (1 November 1979), pp. 197-210. by P. K. Wolber, B. S. Hudson posted to analysis energy fret transfer wolber79pdf by paulschlesinger on 2008-06-12 23:03:10 as
	The steroidal analog GW707 activates the SREBP pathway through disruption of intracellular cholesterol trafficking. [My Copy] Journal of lipid research, Vol. 45, No. 2. (February 2004), pp. 223-231. by J. Zhang, N. Dudley-Rucker, J. R. Crowley, et al.E. Lopez-Perez, M. Issandou, J. E. Schaffer, D. S. Ory posted to analysis cholesterol lipid oxysterol by paulschlesinger on 2008-05-05 22:55:14 as
	Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment [My Copy] Archives of Biochemistry and Biophysics In Highlight section: Methodologies for the measurement of the macular pigment, Vol. 430, No. 2. (15 October 2004), pp. 218-228. by Bradley J. Baas, Ilia G. Denisov, Stephen G. Sligar posted to analysis binding fitting math by paulschlesinger on 2008-01-26 00:20:50 as
	Convection, diffusion and reaction in a surface-based biosensor: Modeling of cooperativity and binding site competition on the surface and in the hydrogel [My Copy] Journal of Colloid and Interface Science, Vol. 296, No. 2. (15 April 2006), pp. 527-537. by Konstantin Lebedev, Salvador Mafe, Pieter Stroeve posted to analysis biacore diffusion transport by paulschlesinger on 2007-10-10 18:18:35 as along with 1 person and 1 group sobolevnrm baker-group

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membrane	529
protein	285
apoptosis	213
simulation	157
peptide	123
lipid	112
structure	112
cholesterol	108
binding	102
mitochondria	86
channel	85
cell	78
review	73
diffusion	67
bax	66
interaction	66
bcl-2	62
membranes	61
dynamics	55
fcs	52
pore	52
surface	51
fusion	50
folding	47
bilayer	45
proteins	42
proton	42
activation	41
death	39
molecular	39
analysis	38
transport	38
cells	37
curvature	37
mitochondrial	36
hydrophobic	35
kinetics	35
micelle	34
model	34
regulation	34
energy	33
phase	33
formation	32
lateral	32
receptor	30
peptides	29
channels	28
cytochrome	28
thermodynamics	28
c	27
cardiolipin	27
water	27
domain	26
tumor	26
mechanism	25
bclxl	24
cancer	24
family	23
interactions	23
ion	23
transfer	23
acid	22
activity	22
effect	22
helix	22
liposome	22
tension	21
toxin	21
bh3	20
bid	20
bim	20
permeability	20
antimicrobial	19
vesicles	19
amyloid	18
p53	18
bak	17
force	17
metabolism	17
ph	17
solution	17
transition	17
calcium	16
fluorescence	16
function	16
melittin	16
oxysterol	16
sterol	16
biology	15
insertion	15
modeling	15
size	15
aggregation	14
fret	14
interfacial	14
k	14
monolayer	14
nmr	14
rafts	14
single	14
vesicle	14
bcl-xl	13
coarse	13
fluctuations	13
fluorescent	13
free	13
puma	13
vdac	13
complex	12
detergent	12
mcl-1	12
molecule	12
phospholipid	12
properties	12
transmembrane	12
volume	12
yeast	12
acids	11
amino	11
atp	11
ceramide	11
chain	11
conformational	11
enzyme	11
er	11
fatty	11
g	11
influenza	11
inhibitor	11
lysosome	11
orientation	11
pump	11
scattering	11
shape	11
small	11
stability	11
structural	11
two	11
area	10
bilayers	10
cation	10
chloride	10
cyclodextrin	10
disease	10
domains	10
expression	10
imaging	10
inhibition	10
ligand	10
lipids	10
liposomes	10
micelles	10
microscopy	10
oligomerization	10
pi	10
theory	10
time	10
virus	10
voltage	10
angle	9
apolipoprotein	9
bacteria	9
caspase	9
conformation	9
crowding	9
dimerization	9
flow	9
intracellular	9
landscape	9
line	9
mutation	9
nanoparticle	9
nanoparticles	9
physics	9
pressure	9
resistance	9
stabilization	9
stress	9
strucutre	9
supported	9
systems	9
transporter	9
x-ray	9
actin	8
bad	8
brownian	8
correlation	8
effects	8
fluctuation	8
heterogeneity	8
in	8
interface	8
kinase	8
movement	8
osteoclast	8
pathway	8
receptors	8
red	8
resonance	8
rhodanese	8
scale	8
signalling	8
spr	8
surfactant	8
targeting	8
tryptophan	8
active	7
assembly	7
association	7
atpase	7
behavior	7
carlo	7
cleavage	7
crystal	7
endocytosis	7
endothelial	7
entropy	7
evolution	7
field	7
gating	7
hydration	7
intramembrane	7
md	7
monte	7
motion	7
neutron	7
oxidase	7
packing	7
particles	7
phospholipase	7
phospholipids	7
plasmon	7
pores	7
potassium	7
prion	7
selectivity	7
self	7
spectroscopy	7
thermal	7
unstructured	7
viral	7
adp	6
alzheimer	6
amphipile	6
and	6
anion	6
apoptotic	6
beta	6
biacore	6
bond	6
calculation	6
casimir	6
charge	6
chemistry	6
comparison	6
complexes	6
composition	6
concentration	6
critical	6
cytoskeleton	6
der	6
distribution	6
docking	6
droplets	6
fission	6
gene	6
giant	6
grain	6
grained	6
growth	6
helices	6
history	6
hiv	6
index	6
inhibitors	6
integration	6
intrinsically	6
lee08pdf	6
localization	6
long	6
mechanics	6
mode	6
na	6
nix	6
normal	6
order	6
particle	6
permeabilization	6
phosphorylation	6
polymer	6
potential	6
ptp	6
refractive	6
scanning	6
sds	6
solvent	6
sphingomyelin	6
state	6
stochastic	6
surfaces	6
temperature	6
ternary	6
therapy	6
transitions	6
van	6
afm	5
alpha	5
bending	5
block	5
carrier	5
caspase-8	5
cl	5
cooperativity	5
cubic	5
degradation	5
dimer	5
disruption	5
distance	5
drug	5
dsc	5
egfr	5
elastic	5
elasticity	5
electrostatic	5
exchange	5
fas	5
flip	5
flop	5
fluid	5
fluids	5
frap	5
glycine	5
guv	5
hydrogen	5
hydrophobicity	5
induced	5
inhibit	5
inhomogeneous	5
ising	5
langmuir	5
lipoprotein	5
liquid	5
m2	5
malaria	5
mesotropic	5
mice	5
mobility	5
models	5
multiple	5
nuclear	5
oligomers	5
osmotic	5
pc	5
perturbation	5
pfob	5
proline	5
proteases	5
proteolysis	5
quantum	5
quenching	5
recognition	5
rhomboid	5
ripening	5
salts	5
sensitivity	5
separation	5
sequence	5
signaling	5
states	5
statistical	5
suppression	5
survival	5
synthesis	5
thermodynamic	5
translocation	5
waals	5
xray	5
zhang08pdf	5
action	4
adsorption	4
alanine	4
anti	4
approach	4
based	4
bile	4
biophysics	4
biosynthesis	4
bone	4
calorimetry	4
cardiac	4
cationic	4
cellular	4
changes	4
charged	4
chemical	4
clc	4
clc-0	4
commentary	4
constant	4
control	4
crac	4
cross	4
c-terminal	4
deformation	4
delivery	4
dependent	4
detergents	4
diabetes	4
disordered	4
dppc	4
drugs	4
dynamic	4
e	4
efflux	4
electron	4
electrostatics	4
em	4
energetics	4
environment	4
factor	4
fibril	4
forces	4
gases	4
gated	4
globule	4
gramicidin	4
h	4
homology	4
hydrodynamic	4
identification	4
inclusions	4
incorporation	4
increment	4
induction	4
interfaces	4
ischemia	4
kim08pdf	4
kim09pdf	4
kinetic	4
lamellar	4
langevin	4
large	4
lattice	4
lifetime	4
like	4
lipase	4
lysis	4
macrophage	4
manuscript	4
measurement	4
mechanical	4
membrne	4
mg	4
molten	4
motif	4
multiscale	4
of	4
omm	4
optical	4
organization	4
ostwald	4
outer	4
oxygen	4
parasite	4
penetration	4
phagosome	4
phases	4
pick	4
protease	4
raft	4
rapid	4
reconstitution	4
region	4
release	4
residues	4
role	4
salt	4
saxs	4
signal	4
sites	4
space	4
spectra	4
sterols	4
surfactants	4
synthase	4
system	4
target	4
tat	4
tnf	4
toxicity	4
trans	4
uptake	4
vacuolar	4
vascular	4
wang09pdf	4
wu08pdf	4
xiap	4
zhang09pdf	4
8	3
a2	3

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