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pcarbo's library [277 articles]

Recent papers added to pcarbo's library.
  • Training Conditional Random Fields by Periodic Step Size Adaptation for Large-Scale Text Mining
    Data Mining, 2007. ICDM 2007. Seventh IEEE International Conference on (2007), pp. 511-516.
    by Han-Shen Huang, Yu-Ming Chang, Chun-Nan Hsu
    posted to optimization graphical-models by pcarbo on 2008-09-18 20:34:22 as **
  • An Efficient Primal-Dual Interior-Point Method for Minimizing a Sum of Euclidean Norms
    SIAM Journal on Scientific Computing, Vol. 22, No. 1. (2000), pp. 243-262.
    by Knud D Andersen, Edmund Christiansen, Andrew R Conn, Michael L Overton
    posted to optimization lasso interior-point-methods by pcarbo on 2008-09-17 20:55:22 as ***
  • A Generalized WangLandau Algorithm for Monte Carlo Computation
    Journal of the American Statistical Association, Vol. 100, No. 472. (December 2005), pp. 1311-1327.
    by Faming Liang
    posted to stochastic-approximation statistical-physics monte-carlo by pcarbo on 2008-09-10 21:45:53 as **
  • A new approach to Monte Carlo simulations in statistical physics: Wang-Landau sampling
    American Journal of Physics, Vol. 72, No. 10. (2004), pp. 1294-1302.
    by DP Landau, Shan H Tsai, M Exler
    posted to statistical-physics spin-glasses monte-carlo by pcarbo on 2008-09-10 21:01:39 as ** along with 3 people dgront rabio softsimu
  • Graphical models
    Statistical Science, Vol. 19, No. 1. (2004), pp. 140-155.
    by Michael I Jordan
    posted to statistics graphical-models bayesian bayes-nets by pcarbo on 2008-09-09 00:07:04 as **
  • Exact integer algorithm for the two-dimensional ±J Ising spin glass
    Physical Review E, Vol. 48, No. 5. (1 November 1993), R3221.
    by Lawrence Saul, Mehran Kardar
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-05 20:45:09 as **
  • Phase transition in the three-dimensional ±J Ising spin glass
    Physical Review B, Vol. 53, No. 2. (1 January 1996), R484.
    by N Kawashima, AP Young
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-05 05:45:54 as **
  • Spin glasses: Experimental facts, theoretical concepts, and open questions
    Reviews of Modern Physics, Vol. 58, No. 4. (1 October 1986), 801.
    by K Binder, AP Young
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-05 05:40:53 as ** along with 1 person alexphys
  • Search for a transition in the three-dimensional J Ising spin-glass
    Physical Review Letters, Vol. 54, No. 9. (4 March 1985), 924.
    by RN Bhatt, AP Young
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-05 05:39:43 as **
  • Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 64, No. 5. (2001)
    by Fugao Wang, DP Landau
    posted to statistical-physics spin-glasses monte-carlo by pcarbo on 2008-09-05 01:10:48 as read along with 3 people dsanders Akimasa softsimu
  • New Algorithm for the Ising Problem: Partition Function for Finite Lattice Graphs
    Physical Review Letters, Vol. 84, No. 26. (26 June 2000), 5924.
    by Anna Galluccio, Martin Loebl, Jan Vondrák
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-04 19:05:50 as **
  • Spin Glasses
    (2007)
    by Edwin Bolthausen, Anton Bovier
    posted to statistical-physics spin-glasses by pcarbo on 2008-09-04 19:04:36 as **
  • Linear and Nonlinear Programming
    (2008)
    by David Luenberger, Ye
    posted to optimization linear-programming by pcarbo on 2008-09-02 21:33:42 as **
  • Finite size corrections in the Sherrington-Kirkpatrick model
    (21 Nov 2007)
    by T Aspelmeier, A Billoire, E Marinari, MA Moore
    posted to spin-glasses mcmc statistical-physics by pcarbo on 2008-09-01 19:47:56 as **
  • On the Modification of $LDL^T$ Factorizations
    Mathematics of Computation, Vol. 28, No. 128. (1974), pp. 1067-1087.
    by R Fletcher, MJD Powell
    posted to numerical-linear-algebra quasi-newton-methods by pcarbo on 2008-08-28 04:08:10 as **
  • Comparison of Bayesian and maximum-likelihood inference of population genetic parameters
    Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 341-345.
    by Peter Beerli
    posted to coalescent population-genetics by pcarbo on 2008-08-20 16:06:33 as ** along with 4 people and 1 group Borelli spavey beerli ryanraaum FAB-lab
  • Interacting sequential Monte Carlo samplers for trans-dimensional simulation
    Comput. Stat. Data Anal., Vol. 52, No. 4. (January 2008), pp. 1765-1791.
    by Ajay Jasra, Arnaud Doucet, David A Stephens, Christopher C Holmes
    posted to bayesian mixture-models monte-carlo population-genetics sequential-importance-sampling by pcarbo on 2008-08-18 17:52:20 as **
  • On population-based simulation for static inference
    Statistics and Computing, Vol. 17, No. 3. (2007), pp. 263-279.
    by Ajay Jasra, David Stephens, Christopher Holmes
    posted to bayesian inference mcmc sequential-importance-sampling by pcarbo on 2008-08-15 17:25:34 as *** along with 1 person nurban
  • Computational methods for complex stochastic systems: a review of some alternatives to MCMC
    Statistics and Computing, Vol. 18, No. 2. (1 June 2008), pp. 151-171.
    by Paul Fearnhead
    posted to importance-sampling inference mcmc monte-carlo sequential-importance-sampling by pcarbo on 2008-08-14 20:21:48 as *** along with 1 person Borelli
  • Two-Metric Projection Methods for Constrained Optimization
    SIAM Journal on Control and Optimization, Vol. 22, No. 6. (1984), pp. 936-964.
    by Eli M Gafni, Dimitri P Bertsekas
    posted to optimization by pcarbo on 2008-08-12 23:30:37 as ***
  • Annealed importance sampling
    Statistics and Computing, Vol. 11, No. 2. (1 April 2001), pp. 125-139.
    by Radford M Neal
    posted to graphical-models importance-sampling mcmc by pcarbo on 2008-08-08 20:31:08 as *** along with 2 people helsley casutton
  • Bayesian Model Choice via Markov Chain Monte Carlo Methods
    by Bradley P Carlin, Siddhartha Chib
    posted to bayesian mcmc by pcarbo on 2008-08-08 08:10:26 as ** along with 2 people maxin106 ddahlem
  • Bayes Factors
    Journal of the American Statistical Association, Vol. 90, No. 430. (1995), pp. 773-795.
    by Robert E Kass, Adrian E Raftery
    posted to bayesian by pcarbo on 2008-08-08 07:41:51 as ** along with 2 people ppeeling vplagnol
  • distruct: a program for the graphical display of population structure
    Molecular Ecology Notes, Vol. 4, No. 1. (2004), pp. 137-138.
    by Noah A Rosenberg
    posted to population-genetics by pcarbo on 2008-08-04 22:57:10 as ***
  • Source population of dispersing rock-wallabies (<i>Petrogale lateralis</i>) idengified by assignment tests on multilocus genotypic data
    Molecular Ecology, Vol. 10, No. 12. (2001), pp. 2867-2876.
    by MDB Eldridge, JE Kinnear, ML Onus
    posted to population-genetics by pcarbo on 2008-08-04 22:53:17 as **
  • Association Mapping in Structured Populations
    The American Journal of Human Genetics, Vol. 67, No. 1. (July 2000), pp. 170-181.
    by Jonathan K Pritchard, Matthew Stephens, Noah A Rosenberg, Peter Donnelly
    posted to bayesian population-genetics by pcarbo on 2008-08-04 22:04:48 as **
  • Detecting Wildlife Poaching: Identifying the Origin of Individuals with Bayesian Assignment Tests and Multilocus Genotypes
    Conservation Biology, Vol. 16, No. 3. (2002), pp. 650-659.
    by Stéphanie Manel, Pierre Berthier, Gordon Luikart
    posted to bayesian population-genetics by pcarbo on 2008-08-04 21:39:08 as ***
  • Microsatellite analysis of genetic variation in black bear populations
    Molecular Ecology, Vol. 3, No. 5. (1994), pp. 489-495.
    by D Paetkau, C Strobeck
    posted to population-genetics by pcarbo on 2008-08-04 19:27:40 as ***
  • Determining the source of individuals: multilocus genotyping in nonequilibrium population genetics
    Trends in Ecology & Evolution, Vol. 14, No. 1. (1 January 1999), pp. 17-21.
    by Neil Davies, Francis X Villablanca, George K Roderick
    posted to population-genetics by pcarbo on 2008-08-04 19:04:33 as ***
  • Inference of Population Structure Under a Dirichlet Process Model
    Genetics, Vol. 175, No. 4. (1 April 2007), pp. 1787-1802.
    by John P Huelsenbeck, Peter Andolfatto
    posted to bayesian dirichletprocess mcmc phylogeny population-genetics by pcarbo on 2008-08-02 22:38:46 as ***
  • Explaining the Gibbs Sampler
    The American Statistician, Vol. 46, No. 3. (1992), pp. 167-174.
    by George Casella, Edward I George
    posted to mcmc by pcarbo on 2008-07-23 21:53:27 as ** along with 9 people bayes thijswesterveld fishtank navil seitentaisei adamsi abbie_riner vlachmore bhaddow
  • The Monte Carlo Method
    Journal of the American Statistical Association, Vol. 44, No. 247. (1949), pp. 335-341.
    by Nicholas Metropolis, S Ulam
    posted to monte-carlo statistics by pcarbo on 2008-07-23 20:08:25 as ** along with 1 person and_ped10
  • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1567-1587.
    by D Falush, M Stephens, JK Pritchard
    posted to bayesian mcmc phylogeny population-genetics by pcarbo on 2008-07-19 01:45:29 as *** along with 4 people sriram_s hms Xavier dmc
  • Inference of population structure using multilocus genotype data: dominant markers and null alleles
    Molecular Ecology Notes, Vol. 7, No. 4. (2007), pp. 574-578.
    by Daniel Falush, Matthew Stephens, Jonathan K Pritchard
    posted to bayesian mcmc phylogeny population-genetics by pcarbo on 2008-07-19 01:43:40 as **
  • Algorithm AS 266: Maximum Likelihood Estimation of the Parameters of the Dirichlet Distribution
    Applied Statistics, Vol. 40, No. 2. (1991), pp. 365-374.
    by A Narayanan
    posted to exponential-families maximum-likelihood by pcarbo on 2008-07-18 01:53:05 as ***
  • Natural Exponential Families with Quadratic Variance Functions
    The Annals of Statistics, Vol. 10, No. 1. (1982), pp. 65-80.
    by Carl N Morris
    posted to exponential-families by pcarbo on 2008-07-16 19:04:58 as ** along with 1 person yaroslavvb
  • Clines, Clusters, and the Effect of Study Design on the Inference of Human Population Structure.
    PLoS Genet, Vol. 1, No. 6. (9 December 2005)
    by Noah A A Rosenberg, Saurabh Mahajan, Sohini Ramachandran, Chengfeng Zhao, Jonathan K K Pritchard, Marcus W W Feldman
    posted to phylogeny by pcarbo on 2008-07-09 04:43:35 as ** along with 3 people ccots larios ryanraaum
  • Inference of Population Structure Using Multilocus Genotype Data
    Genetics, Vol. 155, No. 2. (1 June 2000), pp. 945-959.
    by Jonathan K Pritchard, Matthew Stephens, Peter Donnelly
    posted to bayesian graphical-models mcmc phylogeny by pcarbo on 2008-07-08 19:55:40 as *** along with 2 people sriram_s dalexander
  • Microsatellite DNA analysis of rainbow trout (Oncorhynchus mykiss) from western Alberta, Canada: native status and evolutionary distinctiveness of Athabasca rainbow trout
    Conservation Genetics, Vol. 8, No. 1. (February 2007), pp. 1-15.
    by Taylor, Eric, Tamkee, , Sterling, , Hughson,
    posted to phylogeny by pcarbo on 2008-07-07 23:59:55 as ***
  • Modeling recurrent DNA copy number alterations in array CGH data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by SP Shah, WL Lam, RT Ng, KP Murphy
    posted to bioinformatics mcmc by pcarbo on 2008-07-04 19:32:46 as ** along with 1 person and 1 group frohike Bioinformatics
  • The genetic structure of Pacific Islanders.
    PLoS Genet, Vol. 4, No. 1. (January 2008)
    by JS Friedlaender, FR Friedlaender, FA Reed, KK Kidd, JR Kidd, GK Chambers, RA Lea, JH Loo, G Koki, JA Hodgson, DA Merriwether, JL Weber
    posted to phylogeny by pcarbo on 2008-07-04 04:13:11 as ***
  • Inference of Bacterial Microevolution Using Multilocus Sequence Data
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1251-1266.
    by Xavier Didelot, Daniel Falush
    posted to bayesian mcmc phylogeny by pcarbo on 2008-07-04 03:55:13 as *** along with 5 people operon AaronDarling echinotrix Xavier CharlesM
  • Bayesian Inference in Econometric Models Using Monte Carlo Integration
    Econometrica, Vol. 57, No. 6. (1989), pp. 1317-1339.
    by John Geweke
    posted to importance-sampling by pcarbo on 2008-06-18 02:45:47 as ***
  • Bootstrap Methods: Another Look at the Jackknife
    The Annals of Statistics, Vol. 7, No. 1. (1979), pp. 1-26.
    by B Efron
    posted to bootstrap delta-method statistics by pcarbo on 2008-06-17 19:02:16 as *** along with 1 person alexv
  • Exact tests for the rasch model via sequential importance sampling
    Psychometrika, Vol. 70, No. 1. (1 March 2005), pp. 11-30.
    by Yuguo Chen, Dylan Small
    posted to importance-sampling sequential-importance-sampling by pcarbo on 2008-06-17 05:10:44 as **
  • Sequential Monte Carlo Methods for Statistical Analysis of Tables
    Journal of the American Statistical Association, Vol. 100, No. 469. (March 2005), pp. 109-120.
    by Yuguo Chen, Persi Diaconis, Susan P Holmes, Jun S Liu
    posted to importance-sampling sequential-importance-sampling by pcarbo on 2008-06-17 05:10:10 as ** along with 1 person syoyo
  • Additive models, boosting, and inference for generalized divergences
    (1999), pp. 125-133.
    by John Lafferty
    posted to convexity exponential-families information-theory by pcarbo on 2008-06-16 20:09:05 as *** along with 1 person and 1 group ciga Computational_Information_Geometry
  • Representations of quasi-Newton matrices and their use in limited memory methods
    Mathematical Programming, Vol. 63, No. 1. (1 January 1994), pp. 129-156.
    by Richard H Byrd, Jorge Nocedal, Robert B Schnabel
    posted to optimization quasi-newton-methods by pcarbo on 2008-06-08 02:04:56 as ***
  • An interior algorithm for nonlinear optimization that combines line search and trust region steps
    Mathematical Programming, Vol. 107, No. 3. (14 July 2006), pp. 391-408.
    by RA Waltz, JL Morales, J Nocedal, D Orban
    posted to interior-point-methods optimization quasi-newton-methods by pcarbo on 2008-06-08 01:54:22 as **
  • Interior path following primal-dual algorithms. part I: Linear programming
    Mathematical Programming, Vol. 44, No. 1. (1 May 1989), pp. 27-41.
    by Renato D Monteiro, Ilan Adler
    posted to interior-point-methods linear-programming optimization by pcarbo on 2008-05-29 22:06:36 as **
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