pedrobeltrao's library 1024 articles Export

	Synthetic biology: understanding biological design from synthetic circuits [My Copy] Nature Reviews Genetics, Vol. 10, No. 12. (10 November 2009), pp. 859-871. by Shankar Mukherji, Alexander van Oudenaarden posted to synthetic-biology review design by pedrobeltrao on 2009-11-23 03:32:48 as along with 4 people TRHvidsten megraw mtaschuk karthikraman
	Systems-level dynamic analyses of fate change in murine embryonic stem cells [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 358-362. by Rong Lu, Florian Markowetz, Richard D. Unwin, et al.Jeffrey T. Leek, Edoardo M. Airoldi, Ben D. MacArthur, Alexander Lachmann, Roye Rozov, Avi Ma/'ayan, Laurie A. Boyer, Olga G. Troyanskaya, Anthony D. Whetton, Ihor R. Lemischka posted to systems-biology human data cell-fate by pedrobeltrao on 2009-11-19 00:15:07 as along with 2 people and 1 group frohike balabu Journal picks
	Multiple myeloma phosphotyrosine proteomic profile associated with FGFR3 expression, ligand activation, and drug inhibition [My Copy] Proceedings of the National Academy of Sciences (9 November 2009) by Jonathan R. St-Germain, Paul Taylor, Jiefei Tong, et al.Lily L. Jin, Ana Nikolic, Ian I. Stewart, Robert M. Ewing, Moyez Dharsee, Zhihua Li, Suzanne Trudel, Michael F. Moran posted to signaling phosphorylation human data by pedrobeltrao on 2009-11-16 21:48:59 as along with 1 person williamgunn
	Singularity in Polarization: Rewiring Yeast Cells to Make Two Buds [My Copy] Vol. 139, No. 4. (13 November 2009), pp. 731-743. by Audrey S. Howell, Natasha S. Savage, Sam A. Johnson, et al.Indrani Bose, Allison W. Wagner, Trevin R. Zyla, H. Frederik Nijhout, Michael C. Reed, Andrew B. Goryachev, Daniel J. Lew posted to systems-biology signaling scerevisiae modelling cell-decision by pedrobeltrao on 2009-11-12 22:34:23 as
	Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions [My Copy] Vol. 139, No. 4. (13 November 2009), pp. 707-718. by Tobias Bollenbach, Selwyn Quan, Remy Chait, Roy Kishony posted to ecoli drug-interactions bacteria by pedrobeltrao on 2009-11-12 22:31:57 as
	H2S Signals Through Protein S-Sulfhydration [My Copy] Sci. Signal., Vol. 2, No. 96. (10 November 2009), ra72. by Asif K. Mustafa, Moataz M. Gadalla, Nilkantha Sen, et al.Seyun Kim, Weitong Mu, Sadia K. Gazi, Roxanne K. Barrow, Guangdong Yang, Rui Wang, Solomon H. Snyder posted to sulfhydration ptm by pedrobeltrao on 2009-11-11 00:36:54 as
	McsB Is a Protein Arginine Kinase That Phosphorylates and Inhibits the Heat-Shock Regulator CtsR [My Copy] Science, Vol. 324, No. 5932. (5 June 2009), pp. 1323-1327. by Jakob Fuhrmann, Andreas Schmidt, Silvia Spiess, et al.Anita Lehner, Kursad Turgay, Karl Mechtler, Emmanuelle Charpentier, Tim Clausen posted to phosphorylation kinase bacteria arginine-kinase by pedrobeltrao on 2009-11-11 00:34:27 as along with 2 people absterga neils
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted to evolution bacteria adaptive_evolution adaptation by pedrobeltrao on 2009-11-04 19:48:30 as along with 6 people dbikard yyfwuhan Winzer pkm megraw jjray
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to transcription-factor-binding gene-expression expression_patterns drosophila data bioinformatics by pedrobeltrao on 2009-11-04 19:42:35 as along with 10 people emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to yeast scerevisiae metabolism kinase gene-expression data by pedrobeltrao on 2009-11-04 00:31:09 as along with 3 people ptrobajo arne greg
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to protein-protein-interfaces protein-protein-interactions networks mutations human disease by pedrobeltrao on 2009-11-04 00:25:08 as along with 5 people mingzhi phoenixzxl tmmurali roys brianb
	Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 623-633. by Xiao Liu, Fuhui Long, Hanchuan Peng, et al.Sarah J. Aerni, Min Jiang, Adolfo Sánchez-Blanco, John I. Murray, Elicia Preston, Barbara Mericle, Serafim Batzoglou, Eugene W. Myers, Stuart K. Kim posted to gene-expression data cell-fate c_elegans by pedrobeltrao on 2009-10-30 01:21:32 as
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to specificity protein-dna-interactions motifs human data by pedrobeltrao on 2009-10-29 17:51:32 as along with 2 people and 1 group snow_dragon daveGerrard BergmanLab
	'Edgetic' perturbation of a C. elegans BCL2 ortholog [My Copy] Nature Methods, Vol. 6, No. 11. (25 October 2009), pp. 843-849. by Matija Dreze, Benoit Charloteaux, Stuart Milstein, et al.Pierre-Olivier Vidalain, Muhammed A. Yildirim, Quan Zhong, Nenad Svrzikapa, Viviana Romero, Geraldine Laloux, Robert Brasseur, Jean Vandenhaute, Mike Boxem, Michael E. Cusick, David E. Hill, Marc Vidal posted to protein-protein-interactions perturbation networks method c_elegans by pedrobeltrao on 2009-10-27 21:35:56 as
	Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. [My Copy] Molecular cell, Vol. 36, No. 2. (23 October 2009), pp. 326-339. by Chunaram Choudhary, Jesper V. Olsen, Christian Brandts, et al.Jürgen Cox, Pavankumar N. Reddy, Frank D. Böhmer, Volker Gerke, Dirk-E E. Schmidt-Arras, Wolfgang E. Berdel, Carsten Müller-Tidow, Matthias Mann, Hubert Serve posted to silac phosphorylation mass-spec kinase human data by pedrobeltrao on 2009-10-27 17:36:54 as along with 1 person kentsis
	Survey of large protein complexes in D. vulgaris reveals great structural diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 39. (29 September 2009), pp. 16580-16585. by Bong-Gyoon Han, Ming Dong, Haichuan Liu, et al.Lauren Camp, Jil Geller, Mary Singer, Terry C. Hazen, Megan Choi, H. Ewa Witkowska, David A. Ball, Dieter Typke, Kenneth H. Downing, Maxim Shatsky, Steven E. Brenner, John-Marc Chandonia, Mark D. Biggin, Robert M. Glaeser posted to structures protein-protein-interactions evolution drosophila complexes by pedrobeltrao on 2009-10-26 18:22:41 as
	Evolution of biomolecular networks \|[mdash]\| lessons from metabolic and protein interactions [My Copy] Nat Rev Mol Cell Biol, Vol. 10, No. 11. (01 November 2009), pp. 791-803. by Takuji Yamada, Peer Bork posted to review evolution by pedrobeltrao on 2009-10-23 21:12:54 as along with 6 people venancio biomcgary colmryan pinney nzm tmmurali
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biology, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted to specificity sh3 scerevisiae motifs data bioinformatics by pedrobeltrao on 2009-10-21 21:45:29 as along with 2 people venancio cabbagesofdoom
	What recent ribosome structures have revealed about the mechanism of translation. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1234-1242. by T. Martin Schmeing, V. Ramakrishnan posted to translation ribosome review by pedrobeltrao on 2009-10-21 19:54:32 as along with 5 people and 1 group caducadu Winzer dchughes ppgardne richardfranzese Journal picks
	Structural evolution of p53, p63, and p73: Implication for heterotetramer formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 42. (20 October 2009), pp. 17705-17710. by Andreas C. Joerger, Sridharan Rajagopalan, Eviatar Natan, Dmitry B. Veprintsev, Carol V. Robinson, Alan R. Fersht posted to transcription-factors structures structural-analysis evolution by pedrobeltrao on 2009-10-21 18:23:07 as
	Evolution of complexity in signaling pathways [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 44. (31 October 2006), pp. 16337-16342. by Orkun Soyer, Sebastian Bonhoeffer posted to signaling evolution complexity by pedrobeltrao on 2009-10-21 18:18:03 as
	Probalign: multiple sequence alignment using partition function posterior probabilities [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2715-2715. posted to method bioinformatics alignment by pedrobeltrao on 2009-10-21 18:18:03 as
	CAPS: coevolution analysis using protein sequences [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2821-2821. posted to method co-evolution bioinformatics by pedrobeltrao on 2009-10-21 18:18:03 as
	Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2746-2746. posted to structures protein-rna protein-interactions interactions by pedrobeltrao on 2009-10-21 18:18:03 as
	Discovering disease-genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2800-2800. posted to networks method disease bioinformatics by pedrobeltrao on 2009-10-21 18:18:03 as
	Synthetic biology--putting engineering into biology [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2790-2790. posted to synthetic-biology review by pedrobeltrao on 2009-10-21 18:18:03 as
	Small dsRNAs induce transcriptional activation in human cells [My Copy] Proceedings of the National Academy of Sciences (2006) posted to rnai gene-expression dsrna by pedrobeltrao on 2009-10-21 18:18:03 as
	Accelerated Evolution of Conserved Noncoding Sequences in Humans [My Copy] Science, Vol. 314, No. 5800. (3 November 2006), pp. 786-786. by Shyam Prabhakar, James Noonan, Svante Paabo, Edward Rubin posted to protein-evolution human evolution by pedrobeltrao on 2009-10-21 18:18:03 as
	Preferential Duplication in the Sparse Part of Yeast Protein Interaction Network [My Copy] Molecular Biology and Evolution, Vol. 23, No. 12. (2006), pp. 2467-2467. posted to protein-interactions networks gene-duplication evolution by pedrobeltrao on 2009-10-21 18:18:03 as
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] by Jv Olsen, B. Blagoev, F. Gnad, et al.B. Macek, C. Kumar, P. Mortensen, M. Mann posted to signaling phosphorylation human data by pedrobeltrao on 2009-10-21 18:18:03 as
	Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia [My Copy] Nature, Vol. advanced online publication (1 November 2006) by Jean-Marc Aury, Olivier Jaillon, Laurent Duret, et al.Benjamin Noel, Claire Jubin, Betina Porcel, Beatrice Segurens, Vincent Daubin, Veronique Anthouard, Nathalie Aiach, Olivier Arnaiz, Alain Billaut, Janine Beisson, Isabelle Blanc, Khaled Bouhouche, Francisco Camara, Sandra Duharcourt, Roderic Guigo, Delphine Gogendeau, Michael Katinka, Anne-Marie Keller, Roland Kissmehl, Catherine Klotz, France Koll, Anne Le Mouel, Gersende Lepere, Sophie Malinsky, Mariusz Nowacki, Jacek Nowak, Helmut Plattner, Julie Poulain, Francoise Ruiz, Vincent Serrano, Marek Zagulski, Philippe Dessen, Mireille Betermier, Jean Weissenbach, Claude Scarpelli, Vincent Schachter, Linda Sperling, Eric Meyer, Jean Cohen, And Wincker posted to genome-duplication genome evolution ciliate by pedrobeltrao on 2009-10-21 18:18:02 as
	Systems approach to refining genome annotation [My Copy] Proceedings of the National Academy of Sciences (6 November 2006), pp. 0603364103-0603364103. by Jennifer Reed, Trina Patel, Keri Chen, et al.Andrew Joyce, Margaret Applebee, Christopher Herring, Olivia Bui, Eric Knight, Stephen Fong, Bernhard Palsson posted to systems-biology networks metabolic-netwoks fba by pedrobeltrao on 2009-10-21 18:18:02 as
	Combinatorial methods for small-molecule placement in computational enzyme design [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16710-16715. by Jonathan Lassila, Heidi Privett, Benjamin Allen, Stephen Mayo posted to structures modeling method bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	Quantitative Modeling in Cell Biology: What Is It Good for? [My Copy] Developmental Cell, Vol. 11, No. 3. (2006), pp. 279-279. posted to systems-biology review modeling by pedrobeltrao on 2009-10-21 18:18:02 as
	Latent Pathway Activation and Increased Pathway Capacity Enable Escherichia coli Adaptation to Loss of Key Metabolic Enzymes [My Copy] Journal of Biological Chemistry, Vol. 281, No. 12. (2006), pp. 8024-8024. posted to metabolic-netwoks evolvability evolution by pedrobeltrao on 2009-10-21 18:18:02 as
	An extended consensus motif enhances the specificity of substrate modification by SUMO [My Copy] posted to sumo motifs by pedrobeltrao on 2009-10-21 18:18:02 as
	A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (2006), pp. 151-151. posted to localization lipids bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	Expression Profiling of MAP Kinase–Mediated Meiotic Progression in Caenorhabditis elegans [My Copy] PLoS Genetics, Vol. 2, No. 11. (1 November 2006), pp. 174-174. by Stefanie Leacock, Valerie Reinke posted to signaling mapk expression data celegans by pedrobeltrao on 2009-10-21 18:18:02 as
	Selection for Unequal Densities of σ70 Promoter-Like Signals in Different Regions of Large Bacterial Genomes [My Copy] PLoS Genetics, Vol. 2, No. 11. (1 November 2006), pp. 185-185. by Araceli Huerta, M. Francino, Enrique Morett, And Collado-Vides posted to promoters gene-expression evolution bioinformatics bacteria by pedrobeltrao on 2009-10-21 18:18:02 as
	A statistical score for assessing the quality of multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (3 November 2006), pp. 484-484. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, And Uusipaikka posted to bioinformatics alignment by pedrobeltrao on 2009-10-21 18:18:02 as
	Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2 November 2006), pp. 483-483. by Maria Rodriguez-Fernandez, Jose Egea, Julio Banga posted to systems-biology parameter-estimation bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	PI(3,4,5)P3 and PI(4,5)P2 Lipids Target Proteins with Polybasic Clusters to the Plasma Membrane [My Copy] Science (9 November 2006), pp. 1134389-1134389. by Won Heo, Takanari Inoue, Wei Park, et al.Man Kim, Byung Park, Thomas Wandless, And Meyer posted to localization lipids imaging data by pedrobeltrao on 2009-10-21 18:18:02 as
	The Genome of the Sea Urchin Strongylocentrotus purpuratus [My Copy] Science, Vol. 314, No. 5801. (10 November 2006), pp. 941-952. by Erica Sodergren, George Weinstock, Eric Davidson, et al.R. Cameron, Richard Gibbs, Robert Angerer, Lynne Angerer, Maria Arnone, David Burgess, Robert Burke, James Coffman, Michael Dean, Maurice Elphick, Charles Ettensohn, Kathy Foltz, Amro Hamdoun, Richard Hynes, William Klein, William Marzluff, David McClay, Robert Morris, Arcady Mushegian, Jonathan Rast, L. Smith, Michael Thorndyke, Victor Vacquier, Gary Wessel, Greg Wray, Lan Zhang, Christine Elsik, Olga Ermolaeva, Wratko Hlavina, Gretchen Hofmann, Paul Kitts, Melissa Landrum, Aaron MacKey, Donna Maglott, Georgia Panopoulou, Albert Poustka, Kim Pruitt, Victor Sapojnikov, Xingzhi Song, Alexandre Souvorov, Victor Solovyev, Zheng Wei, Charles Whittaker, Kim Worley, K. Durbin, Yufeng Shen, Olivier Fedrigo, David Garfield, Ralph Haygood, Alexander Primus, Rahul Satija, Tonya Severson, Manuel Gonzalez-Garay, Andrew Jackson, Aleksandar Milosavljevic, Mark Tong, Christopher Killian, Brian Livingston, Fred Wilt, Nikki Adams, Robert Belle, Seth Carbonneau, Rocky Cheung, Patrick Cormier, Bertrand Cosson, Jenifer Croce, Antonio Fernandez-Guerra, Anne-Marie Geneviere, Manisha Goel, Hemant Kelkar, Julia Morales, Odile Mulner-Lorillon, Anthony Robertson, Jared Goldstone, Bryan Cole, David Epel, Bert Gold, Mark Hahn, Meredith Howard-Ashby, Mark Scally, John Stegeman, Erin Allgood, Jonah posted to spurpuratus genome by pedrobeltrao on 2009-10-21 18:18:02 as
	The Transcriptome of the Sea Urchin Embryo [My Copy] Science, Vol. 314, No. 5801. (10 November 2006), pp. 960-962. by Manoj Samanta, Waraporn Tongprasit, Sorin Istrail, et al.R. Cameron, Qiang Tu, Eric Davidson, And Stolc posted to transcription spurpuratus expression data by pedrobeltrao on 2009-10-21 18:18:02 as
	Evolutionary constraints on yeast protein size [My Copy] BMC Evolutionary Biology, Vol. 6, No. 1. (15 August 2006), pp. 61-61. by Jonas Warringer, Anders Blomberg posted to protein-evolution networks evolution by pedrobeltrao on 2009-10-21 18:18:02 as
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (9 November 2006), pp. 104-104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted to protein-interactions networks domain-interactions bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	Yeast Ste2 receptors as tools for study of mammalian protein kinases and adaptors involved in receptor trafficking [My Copy] Journal of Molecular Signaling, Vol. 1, No. 1. (10 November 2006), pp. 2-2. by Dezhong Yin, Elena Shumay, Hsien-Yu Wang, Craig Malbon posted to signaling mapk evolution by pedrobeltrao on 2009-10-21 18:18:02 as
	Analysis of the S. cerevisiae proteome with PeptideAtlas [My Copy] Genome Biology, Vol. 7, No. 11. (13 November 2006), pp. 106-106. by Nichole King, Eric Deutsch, Jeffrey Ranish, et al.Alexey Nesvizhskii, James Eddes, Parag Mallick, Jimmy Eng, Frank Desiere, Mark Flory, Daniel Martin, Bong Kim, Hookeun Lee, Brian Raught, And Aebersold posted to scerevisiae proteomics data by pedrobeltrao on 2009-10-21 18:18:02 as
	The effects of incomplete protein interaction data on structural and evolutionary inferences [My Copy] BMC Biology, Vol. 4, No. 1. (3 November 2006), pp. 39-39. by Eric De Silva, Thomas Thorne, Piers Ingram, et al.Ino Agrafioti, Jonathan Swire, Carsten Wiuf, Michael Stumpf posted to protein-interactions networks bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (18 November 2006), pp. 508-508. by Kai Xia, Dong Dong, Jing-Dong Han posted to protein-interactions predictions networks database bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as

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evolution	270
bioinformatics	236
systems-biology	164
data	128
review	120
networks	110
method	102
gene-expression	90
signaling	83
protein-protein-interactions	81
scerevisiae	72
structures	72
modelling	68
human	62
phosphorylation	51
motifs	43
genetic-interactions	36
bacteria	35
metabolic-networks	33
genome	31
synthetic-biology	30
opinion	29
protein-interactions	29
protein-evolution	28
gene-regulation	27
disease	26
robustness	26
specificity	25
modularity	24
network-reconstruction	24
mass-spec	22
microscopy	22
transcription-factor-binding	22
ecoli	21
design	20
evolvability	20
proteomics	20
snps	20
transcription	20
localization	19
cell-cycle	18
dmelanogaster	18
rnai	18
transcription-factors	18
yeast	18
drosophila	17
expression	17
fba	17
mapk	17
cancer	16
mutations	15
virus	15
domains	14
expression-data	14
saccharomyces-cerevisiae	14
host-pathogen-interactions	13
kinases	13
modeling	13
protein-dna-interactions	13
spatial-regulation	13
fungi	12
gene-duplication	12
genome-mapping	12
network-evolution	12
qtl	12
sumo	12
domain-interactions	11
drug-interactions	11
imaging	11
neurobiology	11
protein	11
ptm	11
binding-energy	10
data-integration	10
machine-learning	10
mouse	10
sequencing	10
arabidopsis	9
chemical-screening	9
dynamics	9
genetic-interaction	9
kinase	9
mutation-rate	9
signal-transduction	9
celegans	8
chromatin	8
comparative-genomics	8
complexes	8
essential-genes	8
mating	8
metabolic-netwoks	8
micrornas	8
noise	8
polymorphisms	8
rna	8
alignment	7
ancestral	7
cell-fate	7
database	7
fitness	7
gene-regulatory-network	7
mammalian	7
metagenomics	7
microfluidics	7
neutral-evolution	7
perturbation	7
population-genetics	7
protein-concentration	7
protein-protein-interaction	7
scientific-modelling	7
splicing	7
complexity	6
development	6
fret	6
genome-duplication	6
metabolic-network	6
morphology	6
motif-finding	6
motility	6
orthology	6
oscillation	6
osmotic-stress	6
pathogens	6
predictions	6
protein-function	6
silac	6
spatial	6
structural-analysis	6
ubiquitination	6
bayes	5
binding-sites	5
co-evolution	5
drugs	5
genetics	5
hog	5
parameter-estimation	5
parts	5
protein-protein-interfaces	5
single-cell	5
bacillus-subtilis	4
biology	4
caenorhabditis	4
directed-evolution	4
engineering	4
eqtls	4
evolutionary-systems-biology	4
gm_rating_4	4
grandients	4
lipids	4
metabolism	4
pathogen	4
phylogenetic-reconstruction	4
polymorphism	4
response-to-stress	4
spombe	4
stress	4
systems	4
tool	4
tyrosine-kinase	4
ubiquitylation	4
cell-decision	3
clustering	3
comparative-interactomics	3
cooperation	3
drug-design	3
encode	3
enzyme	3
essay	3
expression-divergence	3
flux-balance-analysis	3
folding	3
functional-interactions	3
gene	3
gene-deletion	3
glycosylation	3
growth	3
horizontal-gene-transfer	3
interactions	3
kinetics	3
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personal-medicine	3
phosphatase	3
phylogenetic-tree	3
positive-selection	3
principles	3
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protein-domains	3
protocols	3
publishing	3
sh2	3
sh3	3
stem-cells	3
structural-genomics	3
acetylation	2
adaptation	2
archaea	2
calbicans	2
candidate-gene	2
c_elegans	2
cell-signaling	2
co-expression	2
control-theory	2
cooperativity	2
co-regulation	2
dna	2
dna-damage	2
docking	2
drug-interaction	2
drug-resistance	2
education	2
escherichia-coli	2
evolutionary-developmental-biology	2
evolution-of-complexity	2
fish	2
fluorescence	2
flux	2
gene-dosage	2
gfp	2
gradients	2
hapmap	2
information-theory	2
inhibitor	2
insects	2
kss1	2
memory	2
microfabrication	2
minimal-genome	2
mitochondria	2
multicellular	2
neurophysiology	2
nucleosome	2
optimality	2
patterns	2
pdz	2
phosphorylation-predictor	2
population-evolution	2
positive-feedback	2
protease	2
protein-protein-interaction-prediction	2
quantitative-data	2
quorum-sensing	2
recognition	2
recombination	2
regulation-of-gene-expression	2
regulatory-motifs	2
ribosome	2
rna-protein-interactions	2
software	2
spatial-modeling	2
spurpuratus	2
standards	2
statistics	2
svm	2
tor-pathway	2
trait-evolution	2
translation	2
two-component	2
adaptive_evolution	1
aneuploidy	1
archean	1
arginine-kinase	1
ascomycota	1
benchmark	1
bhlh	1
bibtex-import	1
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bioinformatics_bln	1
biological-engineering	1
biological-tissue	1
bistability	1
camp-mediated-signaling_bp	1
cdc28	1
cdk2	1
cdna	1
cell_decision	1
cell-membrane	1
cell-motility	1
cellular-localization	1
cglabrata	1
chip-seq	1
chromatin-silencing_bp	1
ciliate	1
citation-metrics	1
clinical-trials	1
comparative	1
concept	1
conference	1
convergent-evolution	1
copy-number	1
cryo-em	1
cryo-et	1
cryptococcus-neoformans	1
cyanobacteria	1
decision-tree-learning	1
developmental-biology	1
dna-assembly	1
dna-synthesis	1
druggability	1
dsrna	1
editorial	1
embryo	1
endosomal	1
endosome	1
energy	1
epidemiology	1
epigenetic-modifications	1
epigentics	1
epistasis	1
eukaryotes	1
expression_patterns	1
facs	1
false-discovery-rate	1
feature-selection	1
fold	1
functional-residues	1
fungus	1
gaculeatus	1
game-theory	1
gene-function	1
genetic-code	1
genetic-redundancy	1
go	1
golgi-apparatus	1
growth-phenotypes	1
gtpase	1
half-life	1
hidden-markov-model	1
high-throughput-screening	1
histone	1
histone-modifications	1
history	1
hmm	1
hog1	1
immune-effector-process_bp	1
immunity	1
infection	1
information	1
insulin	1
interaction-interference	1
interactomics	1
in-vitro	1
kroganlab	1
language	1
lim	1
limlab	1
lipid-metabolism	1
local-properties	1
lumier	1
m	1
macroevolution	1
malaria	1
medicine	1
membrane	1
membrane-fusion	1
membrane-proteins	1
messenger-rna	1
microrna	1
mirna	1
mitogen-activated-protein-kinase	1
mobility	1
molecular-biology	1
molecular-evolution	1
morphogen	1
mrna	1
mrna-stability	1
mtuberculosis	1
mycobacterium-tuberculosis	1
mycoplasma	1
neanderthal	1
negative-feedback	1
netwoks	1
network-motifs	1
neural-networks	1
normalization	1
nrm	1
ontology	1
open-access	1
open-science	1
organelle-localization	1
ortholog	1
pdz-domain	1
phagosome	1
photochromism	1
physiology	1
pluripotency	1
podospora-anserina	1
prenylation	1
pre-replication-complex	1
primate	1
probes	1
promiscuity	1
promoter	1
protein-data-bank	1
protein-degradation	1
protein-design	1
protein-rna	1
proteolysis	1
proteome	1
pssm	1
rational-design	1
regulation-of-cell-motility	1
regulation-of-cell-shape	1
relative-synonymous-codon-usage	1
response-to-pheromone	1
rhodopsin	1
rt-pcr	1
schizosaccharomyces-pombe	1
self-organization	1
semantic-web	1
sequence-alignment	1
sh2-domain	1
sh3-domain	1
shape	1
signal-transduction_bp	1
sirna	1
small-rnas	1
srna	1
sscrofa	1
stability	1
statistic	1
stem-cell	1
sulfhydration	1
symbiont	1
synaptic-connectivity	1
synthetic-lethality	1
text-mining	1
theory	1
tissues	1
virtual-worlds	1
visualisation	1
xenopus	1
zinc-fingers	1

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