pedrobeltrao's Vidal:M [14 articles] Export

Recent papers posted to pedrobeltrao's library by the author Vidal:M. You can also see everyone's Vidal:M.

	Edgetic perturbation models of human inherited disorders. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru R. Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amélie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to protein-protein-interfaces protein-protein-interactions networks mutations human disease by pedrobeltrao on 2009-11-04 00:25:08 as along with 9 people maren fenghezi karthikraman aceol mingzhi phoenixzxl tmmurali roys brianb
	'Edgetic' perturbation of a C. elegans BCL2 ortholog [My Copy] Nature Methods, Vol. 6, No. 11. (25 October 2009), pp. 843-849. by Matija Dreze, Benoit Charloteaux, Stuart Milstein, et al.Pierre-Olivier Vidalain, Muhammed A. Yildirim, Quan Zhong, Nenad Svrzikapa, Viviana Romero, Geraldine Laloux, Robert Brasseur, Jean Vandenhaute, Mike Boxem, Michael E. Cusick, David E. Hill, Marc Vidal posted to protein-protein-interactions perturbation networks method c_elegans by pedrobeltrao on 2009-10-27 21:35:56 as along with 2 people karthikraman aceol
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biol, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted to specificity sh3 scerevisiae motifs data bioinformatics by pedrobeltrao on 2009-10-21 21:45:29 as along with 4 people kiekyon phoenixzxl venancio cabbagesofdoom
	Epstein-Barr virus and virus human protein interaction maps [My Copy] Proceedings of the National Academy of Sciences (19 April 2007), pp. 0702332104-0702332104. by Michael Calderwood, Kavitha Venkatesan, Li Xing, et al.Michael Chase, Alexei Vazquez, Amy Holthaus, Alexandra Ewence, Ning Li, Tomoko Hirozane-Kishikawa, David Hill, Marc Vidal, Elliott Kieff, Eric Johannsen posted to virus protein-protein-interactions networks human host-pathogen-interactions data by pedrobeltrao on 2009-10-21 18:17:37 as
	The human disease network [My Copy] Proceedings of the National Academy of Sciences (14 May 2007), pp. 0701361104-0701361104. by Kwang-Il Goh, Michael Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi posted to systems-biology protein-protein-interactions networks disease by pedrobeltrao on 2009-10-21 18:17:33 as
	Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans [My Copy] Nat Biotech, Vol. advanced online publication (7 May 2007) by Denis Dupuy, Nicolas Bertin, Cesar Hidalgo, et al.Kavitha Venkatesan, Domena Tu, David Lee, Jennifer Rosenberg, Nenad Svrzikapa, Aurelie Blanc, Alain Carnec, Anne-Ruxandra Carvunis, Rock Pulak, Jane Shingles, John Reece-Hoyes, Rebecca Hunt-Newbury, Ryan Viveiros, William Mohler, Murat Tasan, Frederick Roth, Christian Le Peuch, Ian Hope, Robert Johnsen, Donald Moerman, Albert-Laszlo Barabasi, David Baillie, Marc Vidal posted to spatial-regulation networks gene-expression caenorhabditis by pedrobeltrao on 2009-10-21 18:17:32 as
	Confirmation of Organized Modularity in the Yeast Interactome [My Copy] PLoS Biology, Vol. 5, No. 6. (1 June 2007), pp. 153-153. by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, et al.Michael Cusick, Jing-Dong Han, Hunter Fraser, Frederick Roth, Marc Vidal posted to protein-protein-interactions networks modularity evolution by pedrobeltrao on 2009-10-21 18:17:32 as
	Drug[mdash]target network [My Copy] Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1119-1126. by Muhammed Yildirim, Kwang-Il Goh, Michael Cusick, Albert-Laszlo Barabasi, Marc Vidal posted to networks drugs bioinformatics by pedrobeltrao on 2009-10-21 18:17:30 as
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nat Genet, Vol. 39, No. 11. (November 2007), pp. 1338-1349. by Miguel Pujana, Jing-Dong Han, Lea Starita, et al.Kristen Stevens, Muneesh Tewari, Jin Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael Elshamy, Jean-Francois Rual, Douglas Levine, Laura Rozek, Rebecca Gelman, Kristin Gunsalus, Roger Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine Nathanson, Barbara Weber, Michael Cusick, David Hill, Kenneth Offit, David Livingston, Stephen Gruber, Jeffrey Parvin, Marc Vidal posted to human disease data cancer bioinformatics by pedrobeltrao on 2009-10-21 18:17:30 as
	Hepatitis C virus infection protein network [My Copy] Molecular Systems Biology, Vol. 4, No. 1. (4 November 2008), 230. by B. de Chassey, V. Navratil, L. Tafforeau, et al.M. Hiet, A. Aublin-Gex, S. Agaugue, G. Meiffren, F. Pradezynski, B. Faria, T. Chantier, M. Le Breton, J. Pellet, N. Davoust, P. Mangeot, A. Chaboud, F. Penin, Y. Jacob, P. Vidalain, M. Vidal, P. Andre, C. Rabourdin-Combe, V. Lotteau posted to virus protein-protein-interactions networks host-pathogen-interactions by pedrobeltrao on 2009-10-21 18:17:23 as
	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network [My Copy] Nat Meth, Vol. 6, No. 1. (January 2009), pp. 47-54. by Nicolas Simonis, Jean-Francois Rual, Anne-Ruxandra Carvunis, et al.Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amelie Dricot, Muhammed Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin S. Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin Gunsalus, Michael Cusick, David Hill, Jan Tavernier, Frederick Roth, Marc Vidal posted to protein-protein-interactions data celegans by pedrobeltrao on 2009-10-21 18:17:22 as
	Literature-curated protein interaction datasets [My Copy] Nat Methods, Vol. 6, No. 1. (January 2009), pp. 39-46. by Michael E. Cusick, Haiyuan Yu, Alex Smolyar, et al.Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Jean Vandenhaute, Mary Galli, Junshi Yazaki, David E. Hill, Joseph R. Ecker, Frederick P. Roth, Marc Vidal posted to protein-protein-interactions bioinformatics by pedrobeltrao on 2009-10-21 18:17:22 as
	An empirical framework for binary interactome mapping [My Copy] Nat Methods, Vol. advanced online publication, No. 1. (7 December 2008), pp. 83-90. by Kavitha Venkatesan, Jean-Francois Rual, Alexei Vazquez, et al.Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il Goh, Muhammed Yildirim, Nicolas Simonis, Kathrin Heinzmann, Fana Gebreab, Julie Sahalie, Sebiha Cevik, Christophe Simon, Anne-Sophie de Smet, Elizabeth Dann, Alex Smolyar, Arunachalam Vinayagam, Haiyuan Yu, David Szeto, Heather Borick, Amelie Dricot, Niels Klitgord, Ryan Murray, Chenwei Lin, Maciej Lalowski, Jan Timm, Kirstin Rau, Charles Boone, Pascal Braun, Michael Cusick, Frederick Roth, David Hill, Jan Tavernier, Erich Wanker, Albert-Laszlo Barabasi, Marc Vidal posted to protein-protein-interactions method bioinformatics by pedrobeltrao on 2009-10-21 18:17:22 as
	An experimentally derived confidence score for binary protein-protein interactions [My Copy] Nat Meth, Vol. 6, No. 1. (January 2009), pp. 91-97. by Pascal Braun, Murat Tasan, Matija Dreze, et al.Miriam Barrios-Rodiles, Irma Lemmens, Haiyuan Yu, Julie Sahalie, Ryan Murray, Luba Roncari, Anne-Sophie de Smet, Kavitha Venkatesan, Jean-Francois Rual, Jean Vandenhaute, Michael Cusick, Tony Pawson, David Hill, Jan Tavernier, Jeffrey Wrana, Frederick Roth, Marc Vidal posted to protein-protein-interactions method data-integration by pedrobeltrao on 2009-10-21 18:17:22 as

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evolution	271
bioinformatics	238
systems-biology	164
data	129
review	121
networks	110
method	103
gene-expression	90
signaling	84
protein-protein-interactions	82
scerevisiae	73
structures	73
modelling	69
human	64
phosphorylation	52
motifs	45
genetic-interactions	37
bacteria	35
metabolic-networks	33
genome	31
opinion	30
synthetic-biology	30
protein-interactions	29
protein-evolution	28
gene-regulation	27
specificity	27
robustness	26
disease	26
modularity	24
network-reconstruction	24
transcription-factor-binding	22
microscopy	22
mass-spec	22
ecoli	21
proteomics	20
transcription	20
design	20
snps	20
evolvability	20
localization	19
rnai	18
cell-cycle	18
transcription-factors	18
yeast	18
dmelanogaster	18
expression	17
fba	17
mapk	17
drosophila	17
cancer	16
virus	15
mutations	15
saccharomyces-cerevisiae	14
expression-data	14
domains	14
host-pathogen-interactions	13
spatial-regulation	13
modeling	13
kinases	13
protein-dna-interactions	13
gene-duplication	12
network-evolution	12
sumo	12
genome-mapping	12
fungi	12
qtl	12
protein	11
domain-interactions	11
imaging	11
drug-interactions	11
ptm	11
neurobiology	11
binding-energy	10
mouse	10
data-integration	10
machine-learning	10
sequencing	10
genetic-interaction	9
mutation-rate	9
dynamics	9
chemical-screening	9
kinase	9
arabidopsis	9
signal-transduction	9
mating	8
micrornas	8
database	8
polymorphisms	8
rna	8
essential-genes	8
chromatin	8
celegans	8
comparative-genomics	8
metabolic-netwoks	8
noise	8
complexes	8
fitness	7
neutral-evolution	7
metagenomics	7
mammalian	7
microfluidics	7
scientific-modelling	7
splicing	7
ancestral	7
protein-protein-interaction	7
population-genetics	7
cell-fate	7
perturbation	7
alignment	7
protein-concentration	7
gene-regulatory-network	7
spatial	6
ubiquitylation	6
osmotic-stress	6
development	6
protein-function	6
drugs	6
orthology	6
ubiquitination	6
fret	6
silac	6
metabolic-network	6
oscillation	6
morphology	6
motif-finding	6
predictions	6
complexity	6
pathogens	6
structural-analysis	6
motility	6
genome-duplication	6
parts	5
genetics	5
hog	5
co-evolution	5
spombe	5
protein-protein-interfaces	5
parameter-estimation	5
single-cell	5
binding-sites	5
bayes	5
response-to-stress	4
phylogenetic-reconstruction	4
eqtls	4
phosphatase	4
biology	4
stress	4
polymorphism	4
caenorhabditis	4
tyrosine-kinase	4
pathogen	4
lipids	4
grandients	4
bacillus-subtilis	4
gm_rating_4	4
tool	4
systems	4
engineering	4
evolutionary-systems-biology	4
metabolism	4
directed-evolution	4
cell-decision	3
flux-balance-analysis	3
sh3	3
protein-domains	3
phylogenetic-tree	3
drug-design	3
protocols	3
structural-genomics	3
essay	3
gene	3
comparative-interactomics	3
horizontal-gene-transfer	3
gene-deletion	3
positive-selection	3
expression-divergence	3
folding	3
functional-interactions	3
enzyme	3
encode	3
promoters	3
clustering	3
cooperation	3
glycosylation	3
growth	3
interactions	3
publishing	3
kinetics	3
sh2	3
principles	3
metabolic	3
stem-cells	3
personal-medicine	3
escherichia-coli	2
multicellular	2
statistics	2
gradients	2
information-theory	2
kss1	2
evolutionary-developmental-biology	2
cell-signaling	2
sirna	2
rna-protein-interactions	2
ribosome	2
svm	2
mitochondria	2
quorum-sensing	2
archaea	2
cooperativity	2
pdz	2
gene-dosage	2
standards	2
patterns	2
flux	2
quantitative-data	2
evolution-of-complexity	2
candidate-gene	2
dna-damage	2
regulation-of-gene-expression	2
control-theory	2
software	2
regulatory-motifs	2
minimal-genome	2
drug-interaction	2
inhibitor	2
memory	2
two-component	2
population-evolution	2
c_elegans	2
fish	2
spatial-modeling	2
hapmap	2
calbicans	2
co-regulation	2
spurpuratus	2
insects	2
gfp	2
acetylation	2
recognition	2
adaptation	2
co-expression	2
drug-resistance	2
dna	2
protease	2
positive-feedback	2
neurophysiology	2
nucleosome	2
phosphorylation-predictor	2
translation	2
tor-pathway	2
trait-evolution	2
protein-protein-interaction-prediction	2
optimality	2
education	2
microfabrication	2
docking	2
recombination	2
fluorescence	2
gaculeatus	1
pssm	1
citation-metrics	1
zinc-fingers	1
fold	1
open-science	1
limlab	1
text-mining	1
bioinformatics_bln	1
negative-feedback	1
history	1
statistic	1
copy-number	1
prenylation	1
messenger-rna	1
srna	1
druggability	1
mobility	1
insulin	1
membrane-fusion	1
cdna	1
cdc28	1
promiscuity	1
mtuberculosis	1
cellular-localization	1
tissues	1
morphogen	1
bistability	1
photochromism	1
half-life	1
visualisation	1
bhlh	1
neanderthal	1
archean	1
self-organization	1
mycoplasma	1
golgi-apparatus	1
biodegradation	1
lipid-metabolism	1
mirna	1
in-vitro	1
interactomics	1
expression_patterns	1
protein-degradation	1
fungus	1
membrane-proteins	1
promoter	1
protein-data-bank	1
phagosome	1
functional-residues	1
cryptococcus-neoformans	1
aneuploidy	1
false-discovery-rate	1
normalization	1
comparative	1
neural-networks	1
concept	1
genetic-redundancy	1
interaction-interference	1
protein-design	1
microrna	1
gtpase	1
probes	1
hog1	1
sulfhydration	1
stability	1
virtual-worlds	1
theory	1
gene-function	1
organelle-localization	1
eukaryotes	1
epidemiology	1
ascomycota	1
cell-motility	1
cell_decision	1
endosome	1
adaptive_evolution	1
membrane	1
infection	1
information	1
cryo-em	1
hidden-markov-model	1
mrna-stability	1
biological-tissue	1
endosomal	1
response-to-pheromone	1
rhodopsin	1
xenopus	1
network-motifs	1
game-theory	1
dna-synthesis	1
medicine	1
genetic-code	1
physiology	1
ortholog	1
sh3-domain	1
cyanobacteria	1
facs	1
histone	1
sequence-alignment	1
arginine-kinase	1
protein-rna	1
signal-transduction_bp	1
schizosaccharomyces-pombe	1
m	1
transcription_factor_binding_sites	1
energy	1
kroganlab	1
developmental-biology	1
epistasis	1
shape	1
synaptic-connectivity	1
proteome	1
stem-cell	1
embryo	1
relative-synonymous-codon-usage	1
feature-selection	1
chip-seq	1
regulation-of-cell-motility	1
clinical-trials	1
growth-phenotypes	1
benchmark	1
dsrna	1
local-properties	1
open-access	1
epigentics	1
lim	1
podospora-anserina	1
nrm	1
dna-assembly	1
symbiont	1
pluripotency	1
proteolysis	1
primate	1
ontology	1
mitogen-activated-protein-kinase	1
lumier	1
malaria	1
chromatin-silencing_bp	1
sh2-domain	1
go	1
pdz-domain	1
bibtex-import	1
mycobacterium-tuberculosis	1
rational-design	1
e3	1
semantic-web	1
hmm	1
netwoks	1
epigenetic-modifications	1
molecular-evolution	1
immunity	1
ciliate	1
convergent-evolution	1
cdk2	1
editorial	1
heterochromatin	1
synthetic-lethality	1
histone-modifications	1
rt-pcr	1
macroevolution	1
cryo-et	1
high-throughput-screening	1
cglabrata	1
small-rnas	1
decision-tree-learning	1
biological-engineering	1
language	1
pre-replication-complex	1
mrna	1
cell-membrane	1
conference	1
sscrofa	1
molecular-biology	1
regulation-of-cell-shape	1
camp-mediated-signaling_bp	1
immune-effector-process_bp	1

pedrobeltrao's Vidal:M [14 articles] Export

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