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	Negative feedback that improves information transmission in yeast signalling [My Copy] Nature, Vol. 456, No. 7223. (11 December 2008), pp. 755-761. by Richard C. Yu, Gustavo C. Pesce, Alejandro Colman-Lerner, et al.Larry Lok, David Pincus, Eduard Serra, Mark Holl, Kirsten Benjamin, Andrew Gordon, Roger Brent posted to biology mating modelling scerevisiae systems by pedrobeltrao on 2008-12-10 22:10:53 as along with 6 people behindtherabbit yeastyboy lflorez jbhiatt stringertheory jjray
	Protein sequestration generates a flexible ultrasensitive response in a genetic network [My Copy] Mol Syst Biol, Vol. 5 (19 May 2009) by Nicolas E. Buchler, Frederick R. Cross posted to biology evolution modelling principles systems by pedrobeltrao on 2009-05-21 19:25:44 as along with 4 people Vincent_Rouilly jdoconnell grahamc jjray
	2009: Signaling Breakthroughs of the Year [My Copy] Sci. Signal., Vol. 3, No. 103. (5 January 2010), eg1. by Elizabeth M. Adler posted to signaling opinion by pedrobeltrao on 2010-01-07 21:49:40 as along with 1 person renatomilani
	Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin-Expressing Cells [My Copy] Science In Science, Vol. 326, No. 5959. (11 December 2009), pp. 1502-1509. by Claus Jorgensen, Andrew Sherman, Ginny I. Chen, et al.Adrian Pasculescu, Alexei Poliakov, Marilyn Hsiung, Brett Larsen, David G. Wilkinson, Rune Linding, Tony Pawson posted to signaling phosphotyrosine phosphorylation networks data bioinformatics by pedrobeltrao on 2010-01-07 21:46:22 as along with 3 people yyfwuhan vshahrez roys
	Chemogenomic profiling predicts antifungal synergies [My Copy] Molecular Systems Biology, Vol. 5 (22 December 2009) by Gregor Jansen, Anna Y. Lee, Elias Epp, et al.Amelie Fredette, Jamie Surprenant, Doreen Harcus, Michelle Scott, Elaine Tan, Tamiko Nishimura, Malcolm Whiteway, Michael Hallett, David Y. Thomas posted to scerevisiae data chemogenomics chemical-screening calbicans bioinformatics by pedrobeltrao on 2009-12-29 20:49:25 as
	Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 286. by Alan Moses posted to transcription_factor_binding_sites motifs evolution bioinformatics by pedrobeltrao on 2009-12-16 16:42:29 as along with 1 person and 2 groups cisevol cis-regulatory-evolution BergmanLab
	Towards accurate imputation of quantitative genetic interactions [My Copy] Genome Biology, Vol. 10, No. 12. (2009), R140. by Igor Ulitsky, Nevan Krogan, Ron Shamir posted to scerevisiae method genetic-interactions bioinformatics by pedrobeltrao on 2009-12-16 16:39:46 as along with 4 people megraw sgusev venancio daforerog
	Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA [My Copy] The EMBO Journal, Vol. 28, No. 24. (26 November 2009), pp. 3832-3844. by Ingela Djupedal, Isabelle C. Kos-Braun, Rebecca A. Mosher, et al.Niklas Soderholm, Femke Simmer, Thomas J. Hardcastle, Aurelie Fender, Nadja Heidrich, Alexander Kagansky, Elizabeth Bayne, Wagner, David C. Baulcombe, Robin C. Allshire, Karl Ekwall posted to spombe sirna heterochromatin by pedrobeltrao on 2009-12-16 16:33:51 as along with 1 person and 1 group ppgardne Journal picks
	Detection of sequential polyubiquitylation on a millisecond timescale [My Copy] Nature In Nature, Vol. 462, No. 7273. (03 December 2009), pp. 615-619. by Nathan W. Pierce, Gary Kleiger, Shu-ou Shan, Raymond J. Deshaies posted to ubiquitylation by pedrobeltrao on 2009-12-09 23:15:10 as
	Cracking the Phosphatase Code: Docking Interactions Determine Substrate Specificity [My Copy] Sci. Signal. In Sci. Signal., Vol. 2, No. 100. (8 December 2009), re9. by Jagoree Roy, Martha S. Cyert posted to structures specificity review phosphatase by pedrobeltrao on 2009-12-09 01:41:51 as along with 3 people and 1 group anuragsethi hryk neils structural_bioinformatics
	Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000591. by Alexander Mitsos, Ioannis N. Melas, Paraskeuas Siminelakis, Aikaterini D. Chairakaki, Julio Saez-Rodriguez, Leonidas G. Alexopoulos posted to signaling phosphorylation modelling human drugs data by pedrobeltrao on 2009-12-04 19:40:46 as along with 5 people ptrobajo agomez karthikraman renatomilani shikin
	Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays [My Copy] Molecular Systems Biology, Vol. 5 (01 December 2009) by Avinash Persaud, Philipp Alberts, Eva M. Amsen, et al.Xuejian Xiong, James Wasmuth, Zachary Saadon, Chris Fladd, John Parkinson, Daniela Rotin posted to ubiquitylation specificity motifs human e3 by pedrobeltrao on 2009-12-01 21:44:34 as
	Recurated protein interaction datasets [My Copy] Nature Methods, Vol. 6, No. 12. (01 December 2009), pp. 860-861. by Lukasz Salwinski, Luana Licata, Andrew Winter, et al.David Thorneycroft, Jyoti Khadake, Arnaud Ceol, Andrew C. Aryamontri, Rose Oughtred, Michael Livstone, Lorrie Boucher, David Botstein, Kara Dolinski, Tanya Berardini, Eva Huala, Mike Tyers, David Eisenberg, Gianni Cesareni, Henning Hermjakob posted to protein-protein-interactions opinion database by pedrobeltrao on 2009-11-25 22:53:31 as along with 3 people aceol guhjy karthikraman
	Synthetic biology: understanding biological design from synthetic circuits [My Copy] Nature Reviews Genetics In Nat Rev Genet, Vol. 10, No. 12. (10 November 2009), pp. 859-871. by Shankar Mukherji, Alexander van Oudenaarden posted to synthetic-biology review design by pedrobeltrao on 2009-11-23 03:32:48 as along with 8 people and 1 group dbikard pinney abhishek_tiwari viren4388 TRHvidsten megraw mtaschuk karthikraman Synthetic Biology
	Systems-level dynamic analyses of fate change in murine embryonic stem cells [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 358-362. by Rong Lu, Florian Markowetz, Richard D. Unwin, et al.Jeffrey T. Leek, Edoardo M. Airoldi, Ben D. MacArthur, Alexander Lachmann, Roye Rozov, Avi Ma/'ayan, Laurie A. Boyer, Olga G. Troyanskaya, Anthony D. Whetton, Ihor R. Lemischka posted to systems-biology human data cell-fate by pedrobeltrao on 2009-11-19 00:15:07 as along with 7 people and 1 group arthegall leliavski inesdesantiago djkt gbloeb frohike balabu Journal picks
	Multiple myeloma phosphotyrosine proteomic profile associated with FGFR3 expression, ligand activation, and drug inhibition [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 20127-20132. by Jonathan R. St-Germain, Paul Taylor, Jiefei Tong, et al.Lily L. Jin, Ana Nikolic, Ian I. Stewart, Robert M. Ewing, Moyez Dharsee, Zhihua Li, Suzanne Trudel, Michael F. Moran posted to signaling phosphorylation human data by pedrobeltrao on 2009-11-16 21:48:59 as along with 1 person williamgunn
	Singularity in Polarization: Rewiring Yeast Cells to Make Two Buds [My Copy] Vol. 139, No. 4. (13 November 2009), pp. 731-743. by Audrey S. Howell, Natasha S. Savage, Sam A. Johnson, et al.Indrani Bose, Allison W. Wagner, Trevin R. Zyla, H. Frederik Nijhout, Michael C. Reed, Andrew B. Goryachev, Daniel J. Lew posted to systems-biology signaling scerevisiae modelling cell-decision by pedrobeltrao on 2009-11-12 22:34:23 as
	Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions [My Copy] Vol. 139, No. 4. (13 November 2009), pp. 707-718. by Tobias Bollenbach, Selwyn Quan, Remy Chait, Roy Kishony posted to ecoli drug-interactions bacteria by pedrobeltrao on 2009-11-12 22:31:57 as
	H2S Signals Through Protein S-Sulfhydration [My Copy] Sci. Signal., Vol. 2, No. 96. (10 November 2009), ra72. by Asif K. Mustafa, Moataz M. Gadalla, Nilkantha Sen, et al.Seyun Kim, Weitong Mu, Sadia K. Gazi, Roxanne K. Barrow, Guangdong Yang, Rui Wang, Solomon H. Snyder posted to sulfhydration ptm by pedrobeltrao on 2009-11-11 00:36:54 as
	McsB Is a Protein Arginine Kinase That Phosphorylates and Inhibits the Heat-Shock Regulator CtsR [My Copy] Science, Vol. 324, No. 5932. (5 June 2009), pp. 1323-1327. by Jakob Fuhrmann, Andreas Schmidt, Silvia Spiess, et al.Anita Lehner, Kursad Turgay, Karl Mechtler, Emmanuelle Charpentier, Tim Clausen posted to phosphorylation kinase bacteria arginine-kinase by pedrobeltrao on 2009-11-11 00:34:27 as along with 2 people absterga neils
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted to evolution bacteria adaptive_evolution adaptation by pedrobeltrao on 2009-11-04 19:48:30 as along with 9 people venancio pmalkus tomhebbron dbikard yyfwuhan Winzer pkm megraw jjray
	Combinatorial binding predicts spatio-temporal cis-regulatory activity. [My Copy] Nature In Nature, Vol. 462, No. 7269. (5 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. Furlong posted to transcription-factor-binding gene-expression expression_patterns drosophila data bioinformatics by pedrobeltrao on 2009-11-04 19:42:35 as along with 15 people marti gderwin idonaldson maximilianh cajunsushi emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to yeast scerevisiae metabolism kinase gene-expression data by pedrobeltrao on 2009-11-04 00:31:09 as along with 3 people ptrobajo arne greg
	Edgetic perturbation models of human inherited disorders. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru R. Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amélie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to protein-protein-interfaces protein-protein-interactions networks mutations human disease by pedrobeltrao on 2009-11-04 00:25:08 as along with 9 people maren fenghezi karthikraman aceol mingzhi phoenixzxl tmmurali roys brianb
	Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 623-633. by Xiao Liu, Fuhui Long, Hanchuan Peng, et al.Sarah J. Aerni, Min Jiang, Adolfo Sánchez-Blanco, John I. Murray, Elicia Preston, Barbara Mericle, Serafim Batzoglou, Eugene W. Myers, Stuart K. Kim posted to gene-expression data cell-fate c_elegans by pedrobeltrao on 2009-10-30 01:21:32 as
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to specificity protein-dna-interactions motifs human data by pedrobeltrao on 2009-10-29 17:51:32 as along with 2 people and 1 group snow_dragon daveGerrard BergmanLab
	'Edgetic' perturbation of a C. elegans BCL2 ortholog [My Copy] Nature Methods, Vol. 6, No. 11. (25 October 2009), pp. 843-849. by Matija Dreze, Benoit Charloteaux, Stuart Milstein, et al.Pierre-Olivier Vidalain, Muhammed A. Yildirim, Quan Zhong, Nenad Svrzikapa, Viviana Romero, Geraldine Laloux, Robert Brasseur, Jean Vandenhaute, Mike Boxem, Michael E. Cusick, David E. Hill, Marc Vidal posted to protein-protein-interactions perturbation networks method c_elegans by pedrobeltrao on 2009-10-27 21:35:56 as along with 2 people karthikraman aceol
	Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. [My Copy] Molecular cell, Vol. 36, No. 2. (23 October 2009), pp. 326-339. by Chunaram Choudhary, Jesper V. Olsen, Christian Brandts, et al.Jürgen Cox, Pavankumar N. Reddy, Frank D. Böhmer, Volker Gerke, Dirk-E E. Schmidt-Arras, Wolfgang E. Berdel, Carsten Müller-Tidow, Matthias Mann, Hubert Serve posted to silac phosphorylation mass-spec kinase human data by pedrobeltrao on 2009-10-27 17:36:54 as along with 1 person kentsis
	Survey of large protein complexes in D. vulgaris reveals great structural diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 39. (29 September 2009), pp. 16580-16585. by Bong-Gyoon Han, Ming Dong, Haichuan Liu, et al.Lauren Camp, Jil Geller, Mary Singer, Terry C. Hazen, Megan Choi, H. Ewa Witkowska, David A. Ball, Dieter Typke, Kenneth H. Downing, Maxim Shatsky, Steven E. Brenner, John-Marc Chandonia, Mark D. Biggin, Robert M. Glaeser posted to structures protein-protein-interactions evolution drosophila complexes by pedrobeltrao on 2009-10-26 18:22:41 as
	Evolution of biomolecular networks \|[mdash]\| lessons from metabolic and protein interactions [My Copy] Nature Reviews Molecular Cell Biology, Vol. 10, No. 11. (01 November 2009), pp. 791-803. by Takuji Yamada, Peer Bork posted to review evolution by pedrobeltrao on 2009-10-23 21:12:54 as along with 9 people and 1 group yanhongzhou PabloMarin vvoorr venancio biomcgary colmryan pinney nzm tmmurali Journal picks
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biol, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted to specificity sh3 scerevisiae motifs data bioinformatics by pedrobeltrao on 2009-10-21 21:45:29 as along with 4 people kiekyon phoenixzxl venancio cabbagesofdoom
	What recent ribosome structures have revealed about the mechanism of translation [My Copy] Nature, Vol. 461, No. 7268. (18 October 2009), pp. 1234-1242. by T. Martin Schmeing, V. Ramakrishnan posted to translation ribosome review by pedrobeltrao on 2009-10-21 19:54:32 as along with 6 people and 1 group okapi caducadu Winzer dchughes ppgardne richardfranzese Journal picks
	Structural evolution of p53, p63, and p73: Implication for heterotetramer formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 42. (20 October 2009), pp. 17705-17710. by Andreas C. Joerger, Sridharan Rajagopalan, Eviatar Natan, Dmitry B. Veprintsev, Carol V. Robinson, Alan R. Fersht posted to transcription-factors structures structural-analysis evolution by pedrobeltrao on 2009-10-21 18:23:07 as
	Evolution of complexity in signaling pathways [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 44. (31 October 2006), pp. 16337-16342. by Orkun Soyer, Sebastian Bonhoeffer posted to signaling evolution complexity by pedrobeltrao on 2009-10-21 18:18:03 as
	Probalign: multiple sequence alignment using partition function posterior probabilities [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2715-2715. posted to method bioinformatics alignment by pedrobeltrao on 2009-10-21 18:18:03 as
	CAPS: coevolution analysis using protein sequences [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2821-2821. posted to method co-evolution bioinformatics by pedrobeltrao on 2009-10-21 18:18:03 as
	Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2746-2746. posted to structures protein-rna protein-interactions interactions by pedrobeltrao on 2009-10-21 18:18:03 as
	Discovering disease-genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2800-2800. posted to networks method disease bioinformatics by pedrobeltrao on 2009-10-21 18:18:03 as
	Synthetic biology--putting engineering into biology [My Copy] Bioinformatics, Vol. 22, No. 22. (2006), pp. 2790-2790. posted to synthetic-biology review by pedrobeltrao on 2009-10-21 18:18:03 as
	Small dsRNAs induce transcriptional activation in human cells [My Copy] Proceedings of the National Academy of Sciences (2006) posted to rnai gene-expression dsrna by pedrobeltrao on 2009-10-21 18:18:03 as
	Accelerated Evolution of Conserved Noncoding Sequences in Humans [My Copy] Science, Vol. 314, No. 5800. (3 November 2006), pp. 786-786. by Shyam Prabhakar, James Noonan, Svante Paabo, Edward Rubin posted to protein-evolution human evolution by pedrobeltrao on 2009-10-21 18:18:03 as
	Preferential Duplication in the Sparse Part of Yeast Protein Interaction Network [My Copy] Molecular Biology and Evolution, Vol. 23, No. 12. (2006), pp. 2467-2467. posted to protein-interactions networks gene-duplication evolution by pedrobeltrao on 2009-10-21 18:18:03 as
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] by Jv Olsen, B. Blagoev, F. Gnad, et al.B. Macek, C. Kumar, P. Mortensen, M. Mann posted to signaling phosphorylation human data by pedrobeltrao on 2009-10-21 18:18:03 as
	Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia [My Copy] Nature, Vol. advanced online publication (1 November 2006) by Jean-Marc Aury, Olivier Jaillon, Laurent Duret, et al.Benjamin Noel, Claire Jubin, Betina Porcel, Beatrice Segurens, Vincent Daubin, Veronique Anthouard, Nathalie Aiach, Olivier Arnaiz, Alain Billaut, Janine Beisson, Isabelle Blanc, Khaled Bouhouche, Francisco Camara, Sandra Duharcourt, Roderic Guigo, Delphine Gogendeau, Michael Katinka, Anne-Marie Keller, Roland Kissmehl, Catherine Klotz, France Koll, Anne Le Mouel, Gersende Lepere, Sophie Malinsky, Mariusz Nowacki, Jacek Nowak, Helmut Plattner, Julie Poulain, Francoise Ruiz, Vincent Serrano, Marek Zagulski, Philippe Dessen, Mireille Betermier, Jean Weissenbach, Claude Scarpelli, Vincent Schachter, Linda Sperling, Eric Meyer, Jean Cohen, And Wincker posted to genome-duplication genome evolution ciliate by pedrobeltrao on 2009-10-21 18:18:02 as
	Systems approach to refining genome annotation [My Copy] Proceedings of the National Academy of Sciences (6 November 2006), pp. 0603364103-0603364103. by Jennifer Reed, Trina Patel, Keri Chen, et al.Andrew Joyce, Margaret Applebee, Christopher Herring, Olivia Bui, Eric Knight, Stephen Fong, Bernhard Palsson posted to systems-biology networks metabolic-netwoks fba by pedrobeltrao on 2009-10-21 18:18:02 as
	Combinatorial methods for small-molecule placement in computational enzyme design [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16710-16715. by Jonathan Lassila, Heidi Privett, Benjamin Allen, Stephen Mayo posted to structures modeling method bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as
	Quantitative Modeling in Cell Biology: What Is It Good for? [My Copy] Developmental Cell, Vol. 11, No. 3. (2006), pp. 279-279. posted to systems-biology review modeling by pedrobeltrao on 2009-10-21 18:18:02 as
	Latent Pathway Activation and Increased Pathway Capacity Enable Escherichia coli Adaptation to Loss of Key Metabolic Enzymes [My Copy] Journal of Biological Chemistry, Vol. 281, No. 12. (2006), pp. 8024-8024. posted to metabolic-netwoks evolvability evolution by pedrobeltrao on 2009-10-21 18:18:02 as
	An extended consensus motif enhances the specificity of substrate modification by SUMO [My Copy] posted to sumo motifs by pedrobeltrao on 2009-10-21 18:18:02 as
	A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (2006), pp. 151-151. posted to localization lipids bioinformatics by pedrobeltrao on 2009-10-21 18:18:02 as

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evolution	271
bioinformatics	240
systems-biology	164
data	131
review	121
networks	111
method	103
gene-expression	90
signaling	86
protein-protein-interactions	82
scerevisiae	74
structures	73
modelling	69
human	64
phosphorylation	53
motifs	45
genetic-interactions	37
bacteria	35
metabolic-networks	33
opinion	31
genome	31
synthetic-biology	30
protein-interactions	29
protein-evolution	28
gene-regulation	27
specificity	27
robustness	26
disease	26
modularity	24
network-reconstruction	24
microscopy	22
transcription-factor-binding	22
mass-spec	22
ecoli	21
snps	20
transcription	20
evolvability	20
proteomics	20
design	20
localization	19
rnai	18
yeast	18
dmelanogaster	18
cell-cycle	18
transcription-factors	18
drosophila	17
expression	17
mapk	17
fba	17
cancer	16
virus	15
mutations	15
expression-data	14
saccharomyces-cerevisiae	14
domains	14
spatial-regulation	13
host-pathogen-interactions	13
modeling	13
kinases	13
protein-dna-interactions	13
network-evolution	12
qtl	12
sumo	12
gene-duplication	12
genome-mapping	12
fungi	12
drug-interactions	11
ptm	11
neurobiology	11
domain-interactions	11
protein	11
imaging	11
machine-learning	10
sequencing	10
mouse	10
chemical-screening	10
binding-energy	10
data-integration	10
arabidopsis	9
genetic-interaction	9
kinase	9
signal-transduction	9
dynamics	9
mutation-rate	9
complexes	8
celegans	8
noise	8
comparative-genomics	8
chromatin	8
micrornas	8
essential-genes	8
polymorphisms	8
database	8
metabolic-netwoks	8
mating	8
rna	8
neutral-evolution	7
alignment	7
perturbation	7
population-genetics	7
fitness	7
metagenomics	7
ancestral	7
splicing	7
microfluidics	7
mammalian	7
gene-regulatory-network	7
protein-protein-interaction	7
protein-concentration	7
cell-fate	7
scientific-modelling	7
morphology	6
fret	6
drugs	6
orthology	6
metabolic-network	6
spatial	6
protein-function	6
development	6
silac	6
oscillation	6
motif-finding	6
osmotic-stress	6
complexity	6
structural-analysis	6
ubiquitination	6
motility	6
genome-duplication	6
predictions	6
pathogens	6
ubiquitylation	6
genetics	5
parts	5
parameter-estimation	5
binding-sites	5
hog	5
spombe	5
bayes	5
co-evolution	5
protein-protein-interfaces	5
single-cell	5
engineering	4
phosphatase	4
metabolism	4
systems	4
tool	4
response-to-stress	4
lipids	4
phylogenetic-reconstruction	4
evolutionary-systems-biology	4
stress	4
bacillus-subtilis	4
pathogen	4
polymorphism	4
directed-evolution	4
gm_rating_4	4
caenorhabditis	4
biology	4
grandients	4
tyrosine-kinase	4
eqtls	4
positive-selection	3
publishing	3
phylogenetic-tree	3
structural-genomics	3
protein-domains	3
calbicans	3
functional-interactions	3
kinetics	3
glycosylation	3
interactions	3
enzyme	3
sh2	3
horizontal-gene-transfer	3
promoters	3
sh3	3
stem-cells	3
protocols	3
personal-medicine	3
clustering	3
principles	3
metabolic	3
cooperation	3
drug-design	3
gene	3
folding	3
essay	3
cell-decision	3
encode	3
growth	3
comparative-interactomics	3
gene-deletion	3
expression-divergence	3
flux-balance-analysis	3
software	2
pdz	2
insects	2
patterns	2
tor-pathway	2
trait-evolution	2
svm	2
multicellular	2
protein-protein-interaction-prediction	2
gfp	2
archaea	2
gene-dosage	2
spatial-modeling	2
co-expression	2
escherichia-coli	2
memory	2
co-regulation	2
flux	2
acetylation	2
neurophysiology	2
information-theory	2
standards	2
control-theory	2
two-component	2
hapmap	2
positive-feedback	2
protease	2
recognition	2
candidate-gene	2
dna	2
sirna	2
optimality	2
dna-damage	2
docking	2
education	2
cooperativity	2
drug-resistance	2
quantitative-data	2
cell-signaling	2
population-evolution	2
gradients	2
statistics	2
adaptation	2
microfabrication	2
minimal-genome	2
c_elegans	2
spurpuratus	2
phosphorylation-predictor	2
ribosome	2
quorum-sensing	2
evolutionary-developmental-biology	2
recombination	2
fluorescence	2
evolution-of-complexity	2
mitochondria	2
rna-protein-interactions	2
fish	2
drug-interaction	2
translation	2
kss1	2
regulatory-motifs	2
inhibitor	2
nucleosome	2
regulation-of-gene-expression	2
sh3-domain	1
sh2-domain	1
histone	1
sequence-alignment	1
go	1
pdz-domain	1
schizosaccharomyces-pombe	1
rational-design	1
e3	1
kroganlab	1
developmental-biology	1
proteome	1
embryo	1
hmm	1
feature-selection	1
chip-seq	1
pssm	1
insulin	1
cellular-localization	1
lim	1
nrm	1
dna-assembly	1
symbiont	1
proteolysis	1
primate	1
ontology	1
lumier	1
chromatin-silencing_bp	1
bibtex-import	1
mycobacterium-tuberculosis	1
photochromism	1
local-properties	1
netwoks	1
histone-modifications	1
cryo-et	1
high-throughput-screening	1
promoter	1
srna	1
theory	1
ortholog	1
protein-data-bank	1
normalization	1
probes	1
hog1	1
ascomycota	1
chemogenomics	1
mrna-stability	1
hidden-markov-model	1
cryo-em	1
endosome	1
cell_decision	1
eukaryotes	1
podospora-anserina	1
biological-tissue	1
gene-function	1
endosomal	1
sulfhydration	1
microrna	1
clinical-trials	1
protein-design	1
growth-phenotypes	1
rhodopsin	1
genetic-redundancy	1
neural-networks	1
comparative	1
aneuploidy	1
cryptococcus-neoformans	1
phagosome	1
network-motifs	1
membrane-proteins	1
fungus	1
game-theory	1
phosphotyrosine	1
dna-synthesis	1
in-vitro	1
self-organization	1
archean	1
neanderthal	1
visualisation	1
morphogen	1
tissues	1
cdc28	1
mobility	1
medicine	1
messenger-rna	1
prenylation	1
copy-number	1
bioinformatics_bln	1
limlab	1
cyanobacteria	1
open-science	1
fold	1
facs	1
regulation-of-cell-shape	1
arginine-kinase	1
protein-rna	1
molecular-biology	1
signal-transduction_bp	1
sscrofa	1
conference	1
m	1
pre-replication-complex	1
small-rnas	1
transcription_factor_binding_sites	1
macroevolution	1
synthetic-lethality	1
convergent-evolution	1
ciliate	1
molecular-evolution	1
epigenetic-modifications	1
immunity	1
cdk2	1
heterochromatin	1
energy	1
rt-pcr	1
shape	1
cglabrata	1
synaptic-connectivity	1
decision-tree-learning	1
biological-engineering	1
language	1
mrna	1
cell-membrane	1
stem-cell	1
camp-mediated-signaling_bp	1
immune-effector-process_bp	1
gaculeatus	1
citation-metrics	1
zinc-fingers	1
relative-synonymous-codon-usage	1
text-mining	1
negative-feedback	1
history	1
statistic	1
regulation-of-cell-motility	1
druggability	1
membrane-fusion	1
cdna	1
benchmark	1
promiscuity	1
mtuberculosis	1
dsrna	1
bistability	1
half-life	1
bhlh	1
mycoplasma	1
golgi-apparatus	1
biodegradation	1
mirna	1
open-access	1
interactomics	1
expression_patterns	1
protein-degradation	1
epigentics	1
functional-residues	1
editorial	1
false-discovery-rate	1
concept	1
interaction-interference	1
gtpase	1
organelle-localization	1
stability	1
virtual-worlds	1
lipid-metabolism	1
pluripotency	1
mitogen-activated-protein-kinase	1
epidemiology	1
cell-motility	1
adaptive_evolution	1
membrane	1
infection	1
information	1
response-to-pheromone	1
semantic-web	1
xenopus	1
malaria	1
epistasis	1
genetic-code	1
physiology	1

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