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	Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data [My Copy] PLoS Computational Biology In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000591. by Alexander Mitsos,, Ioannis .. Melas,, Paraskeuas Siminelakis,, Aikaterini .. Chairakaki,, Julio Saez-Rodriguez,, Leonidas .. Alexopoulos, posted to signaling phosphorylation modelling human drugs data by pedrobeltrao on 2009-12-04 19:40:46 as along with 2 people renatomilani shikin
	Systems-level dynamic analyses of fate change in murine embryonic stem cells. [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 358-362. by Rong Lu, Florian Markowetz, Richard D. Unwin, et al.Jeffrey T. Leek, Edoardo M. Airoldi, Ben D. MacArthur, Alexander Lachmann, Roye Rozov, Avi Ma'ayan, Laurie A. Boyer, Olga G. Troyanskaya, Anthony D. Whetton, Ihor R. Lemischka posted to systems-biology human data cell-fate by pedrobeltrao on 2009-11-19 00:15:07 as along with 6 people and 1 group leliavski inesdesantiago djkt gbloeb frohike balabu Journal picks
	Multiple myeloma phosphotyrosine proteomic profile associated with FGFR3 expression, ligand activation, and drug inhibition [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 20127-20132. by Jonathan R. St-Germain, Paul Taylor, Jiefei Tong, et al.Lily L. Jin, Ana Nikolic, Ian I. Stewart, Robert M. Ewing, Moyez Dharsee, Zhihua Li, Suzanne Trudel, Michael F. Moran posted to signaling phosphorylation human data by pedrobeltrao on 2009-11-16 21:48:59 as along with 1 person williamgunn
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature In Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to transcription-factor-binding gene-expression expression_patterns drosophila data bioinformatics by pedrobeltrao on 2009-11-04 19:42:35 as along with 13 people idonaldson maximilianh cajunsushi emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to yeast scerevisiae metabolism kinase gene-expression data by pedrobeltrao on 2009-11-04 00:31:09 as along with 3 people ptrobajo arne greg
	Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 623-633. by Xiao Liu, Fuhui Long, Hanchuan Peng, et al.Sarah J. Aerni, Min Jiang, Adolfo Sánchez-Blanco, John I. Murray, Elicia Preston, Barbara Mericle, Serafim Batzoglou, Eugene W. Myers, Stuart K. Kim posted to gene-expression data cell-fate c_elegans by pedrobeltrao on 2009-10-30 01:21:32 as
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to specificity protein-dna-interactions motifs human data by pedrobeltrao on 2009-10-29 17:51:32 as along with 2 people and 1 group snow_dragon daveGerrard BergmanLab
	Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. [My Copy] Molecular cell, Vol. 36, No. 2. (23 October 2009), pp. 326-339. by Chunaram Choudhary, Jesper V. Olsen, Christian Brandts, et al.Jürgen Cox, Pavankumar N. Reddy, Frank D. Böhmer, Volker Gerke, Dirk-E E. Schmidt-Arras, Wolfgang E. Berdel, Carsten Müller-Tidow, Matthias Mann, Hubert Serve posted to silac phosphorylation mass-spec kinase human data by pedrobeltrao on 2009-10-27 17:36:54 as along with 1 person kentsis
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biol, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted to specificity sh3 scerevisiae motifs data bioinformatics by pedrobeltrao on 2009-10-21 21:45:29 as along with 4 people kiekyon phoenixzxl venancio cabbagesofdoom
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] by Jv Olsen, B. Blagoev, F. Gnad, et al.B. Macek, C. Kumar, P. Mortensen, M. Mann posted to signaling phosphorylation human data by pedrobeltrao on 2009-10-21 18:18:03 as
	Expression Profiling of MAP Kinase–Mediated Meiotic Progression in Caenorhabditis elegans [My Copy] PLoS Genetics, Vol. 2, No. 11. (1 November 2006), pp. 174-174. by Stefanie Leacock, Valerie Reinke posted to signaling mapk expression data celegans by pedrobeltrao on 2009-10-21 18:18:02 as
	PI(3,4,5)P3 and PI(4,5)P2 Lipids Target Proteins with Polybasic Clusters to the Plasma Membrane [My Copy] Science (9 November 2006), pp. 1134389-1134389. by Won Heo, Takanari Inoue, Wei Park, et al.Man Kim, Byung Park, Thomas Wandless, And Meyer posted to localization lipids imaging data by pedrobeltrao on 2009-10-21 18:18:02 as
	The Transcriptome of the Sea Urchin Embryo [My Copy] Science, Vol. 314, No. 5801. (10 November 2006), pp. 960-962. by Manoj Samanta, Waraporn Tongprasit, Sorin Istrail, et al.R. Cameron, Qiang Tu, Eric Davidson, And Stolc posted to transcription spurpuratus expression data by pedrobeltrao on 2009-10-21 18:18:02 as
	Analysis of the S. cerevisiae proteome with PeptideAtlas [My Copy] Genome Biology, Vol. 7, No. 11. (13 November 2006), pp. 106-106. by Nichole King, Eric Deutsch, Jeffrey Ranish, et al.Alexey Nesvizhskii, James Eddes, Parag Mallick, Jimmy Eng, Frank Desiere, Mark Flory, Daniel Martin, Bong Kim, Hookeun Lee, Brian Raught, And Aebersold posted to scerevisiae proteomics data by pedrobeltrao on 2009-10-21 18:18:02 as
	Multiple pathways of selected gene amplification during adaptive mutation [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 46. (14 November 2006), pp. 17319-17324. by Elisabeth Kugelberg, Eric Kofoid, Andrew Reams, Dan Andersson, John Roth posted to gene-duplication evolution ecoli data by pedrobeltrao on 2009-10-21 18:18:01 as
	A large-scale full-length cDNA analysis to explore the budding yeast transcriptome [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 47. (21 November 2006), pp. 17846-17851. by Fumihito Miura, Noriko Kawaguchi, Jun Sese, et al.Atsushi Toyoda, Masahira Hattori, Shinichi Morishita, And Ito posted to transcription scerevisiae data cdna by pedrobeltrao on 2009-10-21 18:18:00 as
	A High-Resolution Single Nucleotide Polymorphism Genetic Map of the Mouse Genome [My Copy] PLoS Biology, Vol. 4, No. 12. (1 December 2006), pp. 395-395. by Sagiv Shifman, Jordana Bell, Richard Copley, et al.Martin Taylor, Robert Williams, Richard Mott, Jonathan Flint posted to polymorphisms mouse data by pedrobeltrao on 2009-10-21 18:17:55 as
	Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry [My Copy] Genome Research (25 January 2007), pp. 5799207-5799207. by Vladislav Petyuk, Wei-Jun Qian, Mark Chin, et al.Haixing Wang, Eric Livesay, Matthew Monroe, Joshua Adkins, Navdeep Jaitly, David Anderson, G. David, Ii Camp, Desmond Smith, Richard Smith posted to proteomics protein-concentration neurobiology mouse data by pedrobeltrao on 2009-10-21 18:17:52 as
	Large-scale phosphorylation analysis of mouse liver [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1488-1493. by Judit Villen, Sean Beausoleil, Scott Gerber, Steven Gygi posted to proteomics phosphorylation mouse data by pedrobeltrao on 2009-10-21 18:17:50 as
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. advanced online publication (4 February 2007) by Nathaniel Heintzman, Rhona Stuart, Gary Hon, et al.Yutao Fu, Christina Ching, R. Hawkins, Leah Barrera, Sara Van Calcar, Chunxu Qu, Keith Ching, Wei Wang, Zhiping Weng, Roland Green, Gregory Crawford, Bing Ren posted to transcription method data chromatin bioinformatics by pedrobeltrao on 2009-10-21 18:17:50 as
	Reproducible isolation of distinct, overlapping segments of the phosphoproteome [My Copy] Nat Meth, Vol. advanced online publication (11 February 2007) by Bernd Bodenmiller, Lukas Mueller, Markus Mueller, Bruno Domon, Ruedi Aebersold posted to systems-biology phosphorylation dmelanogaster data by pedrobeltrao on 2009-10-21 18:17:49 as
	Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map [My Copy] Nature, Vol. advanced online publication (21 February 2007) by Sean Collins, Kyle Miller, Nancy Maas, et al.Assen Roguev, Jeffrey Fillingham, Clement Chu, Maya Schuldiner, Marinella Gebbia, Judith Recht, Michael Shales, Huiming Ding, Hong Xu, Junhong Han, Kristin Ingvarsdottir, Benjamin Cheng, Brenda Andrews, Charles Boone, Shelley Berger, Phil Hieter, Zhiguo Zhang, Grant Brown, C. Ingles, Andrew Emili, C. Allis, David Toczyski, Jonathan Weissman, Jack Greenblatt, Nevan Krogan posted to scerevisiae networks genetic-interactions data by pedrobeltrao on 2009-10-21 18:17:49 as
	Epistatic buffering of fitness loss in yeast double deletion strains [My Copy] Nat Genet, Vol. advanced online publication (25 February 2007) by Lukasz Jasnos, Ryszard Korona posted to systems-biology scerevisiae genetic-interactions data by pedrobeltrao on 2009-10-21 18:17:47 as
	Rate of Evolution in Brain-Expressed Genes in Humans and Other Primates [My Copy] PLoS Biology, Vol. 5, No. 2. (1 February 2007), pp. 13-13. by Hurng-Yi Wang, Huan-Chieh Chien, Naoki Osada, et al.Katsuyuki Hashimoto, Sumio Sugano, Takashi Gojobori, Chen-Kung Chou, Shih-Feng Tsai, Chung Wu, J. C. K. Shen posted to protein-evolution human expression evolution data by pedrobeltrao on 2009-10-21 18:17:47 as
	Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 7. (13 February 2007), pp. 2193-2198. by An Chi, Curtis Huttenhower, Lewis Geer, et al.Joshua Coon, J. E. P. Syka, Dina Bai, Jeffrey Shabanowitz, Daniel Burke, Olga Troyanskaya, Donald Hunt posted to scerevisiae phosphorylation data bioinformatics by pedrobeltrao on 2009-10-21 18:17:46 as
	Adaptive genic evolution in the Drosophila genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 7. (13 February 2007), pp. 2271-2276. by Joshua Shapiro, Wei Huang, Chenhui Zhang, et al.Melissa Hubisz, Jian Lu, David Turissini, Shu Fang, Hurng-Yi Wang, Richard Hudson, Rasmus Nielsen, Zhu Chen, Chung Wu posted to evolution dmelanogaster data by pedrobeltrao on 2009-10-21 18:17:46 as
	Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway [My Copy] Nat Chem Biol, Vol. 2, No. 2. (February 2006), pp. 103-109. by Rebecca Butcher, Bhupinder Bhullar, Ethan Perlstein, Gerald Marsischky, Joshua Labaer, Stuart Schreiber posted to scerevisiae perturbation growth data by pedrobeltrao on 2009-10-21 18:17:46 as
	Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia [My Copy] Nature, Vol. advanced online publication (7 March 2007) by Charles Mullighan, Salil Goorha, Ina Radtke, et al.Christopher Miller, Elaine Coustan-Smith, James Dalton, Kevin Girtman, Susan Mathew, Jing Ma, Stanley Pounds, Xiaoping Su, Ching-Hon Pui, Mary Relling, William Evans, Sheila Shurtleff, James Downing posted to snps data cancer by pedrobeltrao on 2009-10-21 18:17:43 as
	Dynamics of Replication-Independent Histone Turnover in Budding Yeast [My Copy] Science, Vol. 315, No. 5817. (9 March 2007), pp. 1405-1408. by Michael Dion, Tommy Kaplan, Minkyu Kim, Stephen Buratowski, Nir Friedman, Oliver Rando posted to scerevisiae gene-regulation gene-expression data by pedrobeltrao on 2009-10-21 18:17:42 as
	Large-scale mapping of human protein-protein interactions by mass spectrometry [My Copy] Mol Syst Biol, Vol. 3 (13 March 2007) by Rob Ewing, Peter Chu, Fred Elisma, et al.Hongyan Li, Paul Taylor, Shane Climie, Linda McBroom-Cerajewski, Mark Robinson, Liam O'Connor, Michael Li, Rod Taylor, Moyez Dharsee, Yuen Ho, Adrian Heilbut, Lynda Moore, Shudong Zhang, Olga Ornatsky, Yury Bukhman, Martin Ethier, Yinglun Sheng, Julian Vasilescu, Mohamed Abu-Farha, Jean-Philippe Lambert, Henry Duewel, Ian Stewart, Bonnie Kuehl, Kelly Hogue, Karen Colwill, Katharine Gladwish, Brenda Muskat, Robert Kinach, Sally-Lin Adams, Michael Moran, Gregg Morin, Thodoros Topaloglou, Daniel Figeys posted to protein-protein-interactions networks human data complexes by pedrobeltrao on 2009-10-21 18:17:42 as
	Regional variation in the density of essential genes in mice [My Copy] PLoS Genetics, Vol. preprint, No. 2007. (1 March 2007), pp. 72-72. by Kathryn Hentges, David Pollock, Bin Liu, Monica Justice posted to mouse essential-genes data by pedrobeltrao on 2009-10-21 18:17:42 as
	Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains [My Copy] PLoS ONE, Vol. 2, No. 3. (2007), pp. 322-322. posted to snps scerevisiae data by pedrobeltrao on 2009-10-21 18:17:42 as
	Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [My Copy] Proceedings of the National Academy of Sciences (26 March 2007), pp. 0608638104-0608638104. by Alejandro Wolf-Yadlin, Sampsa Hautaniemi, Douglas Lauffenburger, Forest White posted to systems-biology signaling proteomics phosphorylation data by pedrobeltrao on 2009-10-21 18:17:42 as
	Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations [My Copy] Science (22 March 2007), pp. 1132067-1132067. by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, et al.Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita posted to systems-biology robustness perturbation ecoli data by pedrobeltrao on 2009-10-21 18:17:42 as
	Phosphoproteomic identification of targets of the Arabidopsis sucrose nonfermenting-like kinase SnRK2.8 reveals a connection to metabolic processes [My Copy] Proceedings of the National Academy of Sciences (2 April 2007), pp. 0610208104-0610208104. by Ryoung Shin, Sophie Alvarez, Adrien Burch, Joseph Jez, Daniel Schachtman posted to phosphorylation data arabidopsis by pedrobeltrao on 2009-10-21 18:17:41 as
	Survey Sequencing and Comparative Analysis of the Elephant Shark (Callorhinchus milii) Genome [My Copy] PLoS Biology, Vol. 5, No. 4. (1 April 2007), pp. 101-101. by Byrappa Venkatesh, Ewen Kirkness, Yong-Hwee Loh, et al.Aaron Halpern, Alison Lee, Justin Johnson, Nidhi Dandona, Lakshmi Viswanathan, Alice Tay, J. Venter, Robert Strausberg, Sydney Brenner posted to genome fish data by pedrobeltrao on 2009-10-21 18:17:40 as
	Synthetic lethal screen identification of chemosensitizer loci in cancer cells [My Copy] Nature, Vol. 446, No. 7137. (12 April 2007), pp. 815-819. by Angelique Whitehurst, Brian Bodemann, Jessica Cardenas, et al.Deborah Ferguson, Luc Girard, Michael Peyton, John Minna, Carolyn Michnoff, Weihua Hao, Michael Roth, Xian-Jin Xie, Michael White posted to genetic-interaction data cancer by pedrobeltrao on 2009-10-21 18:17:38 as
	Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs [My Copy] PLoS Genetics, Vol. preprint, No. 2007. (1 April 2007), pp. 89-89. by Henriette O'Geen, Sharon Squazzo, Sushma Iyengar, et al.Kim Blahnik, John Rinn, Howard Chang, Roland Green, Peggy Farnham posted to systems-biology gene-regulation data by pedrobeltrao on 2009-10-21 18:17:37 as
	Epstein-Barr virus and virus human protein interaction maps [My Copy] Proceedings of the National Academy of Sciences (19 April 2007), pp. 0702332104-0702332104. by Michael Calderwood, Kavitha Venkatesan, Li Xing, et al.Michael Chase, Alexei Vazquez, Amy Holthaus, Alexandra Ewence, Ning Li, Tomoko Hirozane-Kishikawa, David Hill, Marc Vidal, Elliott Kieff, Eric Johannsen posted to virus protein-protein-interactions networks human host-pathogen-interactions data by pedrobeltrao on 2009-10-21 18:17:37 as
	A genome-wide RNA interference screen identifies putative chromatin regulators essential for E2F repression [My Copy] Proceedings of the National Academy of Sciences (17 May 2007), pp. 0610279104-0610279104. by Jianrong Lu, Marie-Laure Ruhf, Norbert Perrimon, Philip Leder posted to rnai dmelanogaster data chromatin by pedrobeltrao on 2009-10-21 18:17:33 as
	Cell -- Barski et al. [My Copy] posted to human histone-modifications gene-expression data chromatin by pedrobeltrao on 2009-10-21 18:17:33 as
	The contributions of normal variation and genetic background to mammalian gene expression [My Copy] Genome Biology, Vol. 7, No. 3. (31 March 2006), pp. 26-26. by Colin Pritchard, David Coil, Sarah Hawley, Li Hsu, Peter Nelson posted to mouse gene-regulation gene-expression data by pedrobeltrao on 2009-10-21 18:17:33 as
	Whole-Genome Cartography of Estrogen Receptor α Binding Sites [My Copy] PLoS Genetics, Vol. 3, No. 6. (1 June 2007), pp. 87-87. by Chin-Yo Lin, Vinsensius Vega, Jane Thomsen, et al.Tao Zhang, Say Kong, Min Xie, Kuo Chiu, Leonard Lipovich, Daniel Barnett, Fabio Stossi, Ailing Yeo, Joshy George, Vladimir Kuznetsov, Yew Lee, Tze Charn, Nallasivam Palanisamy, Lance Miller, Edwin Cheung, Benita Katzenellenbogen, Yijun Ruan, Guillaume Bourque, Chia-Lin Wei, Edison Liu posted to transcription-factor-binding data by pedrobeltrao on 2009-10-21 18:17:32 as
	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [My Copy] Nature, Vol. 447, No. 7145. (7 June 2007), pp. 661-678. posted to polymorphisms human disease data by pedrobeltrao on 2009-10-21 18:17:32 as
	A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila [My Copy] Nature, Vol. 448, No. 7150. (12 July 2007), pp. 151-156. by Georg Dietzl, Doris Chen, Frank Schnorrer, et al.Kuan-Chung Su, Yulia Barinova, Michaela Fellner, Beate Gasser, Kaolin Kinsey, Silvia Oppel, Susanne Scheiblauer, Africa Couto, Vincent Marra, Krystyna Keleman, Barry Dickson posted to systems-biology rnai dmelanogaster data by pedrobeltrao on 2009-10-21 18:17:31 as
	siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P3-mTOR signaling pathway as a primary regulator of transferrin uptake [My Copy] Genome Biology, Vol. 8, No. 7. (19 July 2007), pp. 142-142. by Thierry Galvez, Mary Teruel, Won Heo, et al.Joshua Jones, Man Kim, Jen Liou, Jason Myers, Tobias Meyer posted to signaling rnai human data by pedrobeltrao on 2009-10-21 18:17:31 as
	PhosphoPep[mdash]a phosphoproteome resource for systems biology research in Drosophila Kc167 cells [My Copy] Mol Syst Biol, Vol. 3 (16 October 2007) by Bernd Bodenmiller, Johan Malmstrom, Bertran Gerrits, et al.David Campbell, Henry Lam, Alexander Schmidt, Oliver Rinner, Lukas Mueller, Paul Shannon, Patrick Pedrioli, Christian Panse, Hoo-Keun Lee, Ralph Schlapbach, Ruedi Aebersold posted to phosphorylation drosophila data by pedrobeltrao on 2009-10-21 18:17:30 as
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nat Genet, Vol. 39, No. 11. (November 2007), pp. 1338-1349. by Miguel Pujana, Jing-Dong Han, Lea Starita, et al.Kristen Stevens, Muneesh Tewari, Jin Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael Elshamy, Jean-Francois Rual, Douglas Levine, Laura Rozek, Rebecca Gelman, Kristin Gunsalus, Roger Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine Nathanson, Barbara Weber, Michael Cusick, David Hill, Kenneth Offit, David Livingston, Stephen Gruber, Jeffrey Parvin, Marc Vidal posted to human disease data cancer bioinformatics by pedrobeltrao on 2009-10-21 18:17:30 as
	Cell -- Lécuyer et al. [My Copy] posted to rna localization dmelanogaster data by pedrobeltrao on 2009-10-21 18:17:30 as
	A Large-scale Protein protein Interaction Analysis in Synechocystis sp. PCC6803 [My Copy] DNA Res, Vol. 14, No. 5. (13 November 2007), pp. dsm021v1-216. posted to protein-protein-interactions networks data cyanobacteria by pedrobeltrao on 2009-10-21 18:17:29 as

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evolution	270
bioinformatics	236
systems-biology	164
data	129
review	121
networks	110
method	102
gene-expression	90
signaling	84
protein-protein-interactions	82
structures	73
scerevisiae	72
modelling	69
human	64
phosphorylation	52
motifs	44
genetic-interactions	36
bacteria	35
metabolic-networks	33
genome	31
opinion	30
synthetic-biology	30
protein-interactions	29
protein-evolution	28
gene-regulation	27
specificity	27
robustness	26
disease	26
network-reconstruction	24
modularity	24
mass-spec	22
transcription-factor-binding	22
microscopy	22
ecoli	21
snps	20
evolvability	20
design	20
transcription	20
proteomics	20
localization	19
transcription-factors	18
cell-cycle	18
rnai	18
yeast	18
dmelanogaster	18
mapk	17
fba	17
drosophila	17
expression	17
cancer	16
virus	15
mutations	15
domains	14
expression-data	14
saccharomyces-cerevisiae	14
spatial-regulation	13
kinases	13
modeling	13
protein-dna-interactions	13
host-pathogen-interactions	13
sumo	12
genome-mapping	12
qtl	12
gene-duplication	12
network-evolution	12
fungi	12
neurobiology	11
imaging	11
domain-interactions	11
protein	11
drug-interactions	11
ptm	11
binding-energy	10
machine-learning	10
data-integration	10
sequencing	10
mouse	10
arabidopsis	9
mutation-rate	9
dynamics	9
chemical-screening	9
kinase	9
signal-transduction	9
genetic-interaction	9
chromatin	8
database	8
complexes	8
essential-genes	8
rna	8
celegans	8
noise	8
metabolic-netwoks	8
polymorphisms	8
mating	8
micrornas	8
comparative-genomics	8
protein-protein-interaction	7
fitness	7
alignment	7
perturbation	7
gene-regulatory-network	7
population-genetics	7
ancestral	7
splicing	7
cell-fate	7
microfluidics	7
mammalian	7
protein-concentration	7
scientific-modelling	7
metagenomics	7
neutral-evolution	7
protein-function	6
predictions	6
silac	6
morphology	6
metabolic-network	6
oscillation	6
development	6
ubiquitination	6
ubiquitylation	6
fret	6
osmotic-stress	6
structural-analysis	6
motif-finding	6
pathogens	6
genome-duplication	6
complexity	6
spatial	6
motility	6
orthology	6
drugs	6
co-evolution	5
parts	5
single-cell	5
genetics	5
hog	5
bayes	5
parameter-estimation	5
binding-sites	5
protein-protein-interfaces	5
engineering	4
stress	4
caenorhabditis	4
response-to-stress	4
biology	4
bacillus-subtilis	4
tyrosine-kinase	4
phylogenetic-reconstruction	4
lipids	4
directed-evolution	4
systems	4
spombe	4
pathogen	4
polymorphism	4
tool	4
grandients	4
metabolism	4
eqtls	4
phosphatase	4
gm_rating_4	4
evolutionary-systems-biology	4
publishing	3
interactions	3
clustering	3
phylogenetic-tree	3
comparative-interactomics	3
glycosylation	3
functional-interactions	3
stem-cells	3
personal-medicine	3
folding	3
drug-design	3
structural-genomics	3
metabolic	3
principles	3
protocols	3
cell-decision	3
cooperation	3
kinetics	3
gene	3
positive-selection	3
sh2	3
horizontal-gene-transfer	3
encode	3
gene-deletion	3
growth	3
flux-balance-analysis	3
essay	3
expression-divergence	3
sh3	3
enzyme	3
protein-domains	3
promoters	3
gradients	2
control-theory	2
co-regulation	2
svm	2
software	2
regulatory-motifs	2
recognition	2
information-theory	2
dna	2
gene-dosage	2
microfabrication	2
spurpuratus	2
trait-evolution	2
minimal-genome	2
acetylation	2
tor-pathway	2
multicellular	2
phosphorylation-predictor	2
protease	2
drug-interaction	2
inhibitor	2
cell-signaling	2
positive-feedback	2
cooperativity	2
gfp	2
escherichia-coli	2
memory	2
neurophysiology	2
standards	2
two-component	2
insects	2
nucleosome	2
quantitative-data	2
flux	2
population-evolution	2
c_elegans	2
archaea	2
fish	2
education	2
patterns	2
optimality	2
fluorescence	2
mitochondria	2
quorum-sensing	2
spatial-modeling	2
protein-protein-interaction-prediction	2
drug-resistance	2
hapmap	2
recombination	2
co-expression	2
rna-protein-interactions	2
kss1	2
evolution-of-complexity	2
docking	2
translation	2
evolutionary-developmental-biology	2
candidate-gene	2
dna-damage	2
adaptation	2
ribosome	2
regulation-of-gene-expression	2
pdz	2
statistics	2
calbicans	2
small-rnas	1
local-properties	1
epistasis	1
semantic-web	1
growth-phenotypes	1
ortholog	1
theory	1
promoter	1
photochromism	1
cellular-localization	1
insulin	1
pssm	1
hmm	1
e3	1
rational-design	1
pdz-domain	1
go	1
sh2-domain	1
malaria	1
mitogen-activated-protein-kinase	1
pluripotency	1
podospora-anserina	1
epigentics	1
open-access	1
sirna	1
dsrna	1
benchmark	1
regulation-of-cell-motility	1
relative-synonymous-codon-usage	1
stem-cell	1
synaptic-connectivity	1
shape	1
energy	1
m	1
signal-transduction_bp	1
protein-rna	1
arginine-kinase	1
facs	1
cyanobacteria	1
medicine	1
dna-synthesis	1
game-theory	1
network-motifs	1
rhodopsin	1
endosomal	1
biological-tissue	1
mrna-stability	1
hidden-markov-model	1
cryo-em	1
endosome	1
cell_decision	1
eukaryotes	1
organelle-localization	1
gene-function	1
sulfhydration	1
microrna	1
protein-design	1
genetic-redundancy	1
neural-networks	1
comparative	1
aneuploidy	1
cryptococcus-neoformans	1
phagosome	1
membrane-proteins	1
fungus	1
in-vitro	1
self-organization	1
archean	1
neanderthal	1
visualisation	1
morphogen	1
tissues	1
cdc28	1
mobility	1
messenger-rna	1
prenylation	1
copy-number	1
bioinformatics_bln	1
limlab	1
open-science	1
fold	1
regulation-of-cell-shape	1
molecular-biology	1
sscrofa	1
conference	1
pre-replication-complex	1
macroevolution	1
synthetic-lethality	1
convergent-evolution	1
ciliate	1
molecular-evolution	1
epigenetic-modifications	1
immunity	1
cdk2	1
rt-pcr	1
cglabrata	1
decision-tree-learning	1
biological-engineering	1
language	1
mrna	1
cell-membrane	1
camp-mediated-signaling_bp	1
immune-effector-process_bp	1
gaculeatus	1
citation-metrics	1
zinc-fingers	1
text-mining	1
negative-feedback	1
history	1
statistic	1
druggability	1
membrane-fusion	1
cdna	1
promiscuity	1
mtuberculosis	1
bistability	1
half-life	1
bhlh	1
mycoplasma	1
golgi-apparatus	1
biodegradation	1
mirna	1
interactomics	1
expression_patterns	1
protein-degradation	1
functional-residues	1
false-discovery-rate	1
concept	1
interaction-interference	1
gtpase	1
stability	1
virtual-worlds	1
epidemiology	1
cell-motility	1
adaptive_evolution	1
membrane	1
infection	1
information	1
response-to-pheromone	1
xenopus	1
genetic-code	1
physiology	1
sh3-domain	1
histone	1
sequence-alignment	1
schizosaccharomyces-pombe	1
kroganlab	1
developmental-biology	1
proteome	1
embryo	1
feature-selection	1
chip-seq	1
lim	1
nrm	1
dna-assembly	1
symbiont	1
proteolysis	1
primate	1
ontology	1
lumier	1
chromatin-silencing_bp	1
bibtex-import	1
mycobacterium-tuberculosis	1
netwoks	1
histone-modifications	1
cryo-et	1
high-throughput-screening	1
srna	1
protein-data-bank	1
normalization	1
probes	1
hog1	1
ascomycota	1
clinical-trials	1
editorial	1
lipid-metabolism	1

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