CiteULike: pedrobeltrao's drosophila [17 articles]

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Nature In Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70.

by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong

posted to transcription-factor-binding gene-expression expression_patterns drosophila data bioinformatics by pedrobeltrao on 2009-11-04 19:42:35 as

along with 13 people idonaldson maximilianh cajunsushi emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten

Survey of large protein complexes in D. vulgaris reveals great structural diversity

Proceedings of the National Academy of Sciences, Vol. 106, No. 39. (29 September 2009), pp. 16580-16585.

by Bong-Gyoon Han, Ming Dong, Haichuan Liu, et al.Lauren Camp, Jil Geller, Mary Singer, Terry C. Hazen, Megan Choi, H. Ewa Witkowska, David A. Ball, Dieter Typke, Kenneth H. Downing, Maxim Shatsky, Steven E. Brenner, John-Marc Chandonia, Mark D. Biggin, Robert M. Glaeser

posted to structures protein-protein-interactions evolution drosophila complexes by pedrobeltrao on 2009-10-26 18:22:41 as

Quantitative Morphological Signatures Define Local Signaling Networks Regulating Cell Morphology

Science, Vol. 316, No. 5832. (22 June 2007), pp. 1753-1756.

by Chris Bakal, John Aach, George Church, Norbert Perrimon

posted to systems-biology signaling morphology drosophila by pedrobeltrao on 2009-10-21 18:17:32 as

PhosphoPep[mdash]a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

Mol Syst Biol, Vol. 3 (16 October 2007)

by Bernd Bodenmiller, Johan Malmstrom, Bertran Gerrits, et al.David Campbell, Henry Lam, Alexander Schmidt, Oliver Rinner, Lukas Mueller, Paul Shannon, Patrick Pedrioli, Christian Panse, Hoo-Keun Lee, Ralph Schlapbach, Ruedi Aebersold

posted to phosphorylation drosophila data by pedrobeltrao on 2009-10-21 18:17:30 as

Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans

PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.

by David Begun, Alisha Holloway, Kristian Stevens, et al.Ladeana Hillier, Yu-Ping Poh, Matthew Hahn, Phillip Nista, Corbin Jones, Andrew Kern, Colin Dewey, Lior Pachter, Eugene Myers, Charles Langley

posted to polymorphisms genome evolution drosophila by pedrobeltrao on 2009-10-21 18:17:29 as

Dynamic evolution of the innate immune system in Drosophila

Nat Genet, Vol. 39, No. 12. (December 2007), pp. 1461-1468.

by Timothy Sackton, Brian Lazzaro, Todd Schlenke, Jay Evans, Dan Hultmark, Andrew Clark

posted to genome gene-duplication evolution drosophila by pedrobeltrao on 2009-10-21 18:17:29 as

Reverse engineering of force integration during mitosis in the Drosophila embryo

Mol Syst Biol, Vol. 4 (6 May 2008)

by Roy Wollman, Gul Civelekoglu-Scholey, Jonathan Scholey, Alex Mogilner

posted to scientific-modelling embryo drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:26 as

Evolution of Gene Expression in the Drosophila Olfactory System

Molecular Biology and Evolution, Vol. 25, No. 6. (1 June 2008)

by Artyom Kopp, Olga Barmina, Andrew Hamilton, Laura Higgins, Lauren McIntyre, Corbin Jones

posted to gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:26 as

The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila

Cell, Vol. 134, No. 4. (2008), 610.

posted to gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:24 as

Evolutionary Plasticity of Polycomb/Trithorax Response Elements in Drosophila Species

PLoS Biology, Vol. 6, No. 10. (1 October 2008), e261.

by Arne Hauenschild, Leonie Ringrose, Christina Altmutter, Renato Paro, Marc Rehmsmeier

posted to transcription-factor-binding gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:23 as

Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts

PLoS Biology, Vol. 6, No. 11. (1 November 2008), e263.

posted to gradients gene-regulation evolution drosophila by pedrobeltrao on 2009-10-21 18:17:22 as

Evolution of Regulatory Sequences in 12 Drosophila Species

PLoS Genetics, Vol. 5, No. 1. (2009), e1000330.

posted to transcription-factors transcription-factor-binding pssm gene-regulation evolution drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:22 as

Systems genetics of complex traits in Drosophila melanogaster

Nat Genet, Vol. 41, No. 3. (March 2009), pp. 299-307.

by Julien Ayroles, Mary A. Carbone, Eric Stone, et al.Katherine Jordan, Richard Lyman, Michael Magwire, Stephanie Rollmann, Laura Duncan, Faye Lawrence, Robert Anholt, Trudy Mackay

posted to trait-evolution modularity gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:21 as

Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi

Nature, Vol. advanced online publication, No. 7241. (12 April 2009), pp. 987-992.

by Jennifer Mummery-Widmer, Masakazu Yamazaki, Thomas Stoeger, et al.Maria Novatchkova, Sheetal Bhalerao, Doris Chen, Georg Dietzl, Barry Dickson, Juergen Knoblich

posted to signaling rnai drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:21 as

Discovery of insect and human dengue virus host factors

Nature, Vol. 458, No. 7241. (23 April 2009), pp. 1047-1050.

by October Sessions, Nicholas Barrows, Jayme Souza-Neto, et al.Timothy Robinson, Christine Hershey, Mary Rodgers, Jose Ramirez, George Dimopoulos, Priscilla Yang, James Pearson, Mariano Garcia-Blanco

posted to virus rnai drosophila data by pedrobeltrao on 2009-10-21 18:17:21 as

Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics

Mol Cell Proteomics (9 May 2009), pp. M800559-MCP200.

by Maximiliane Hilger, Tiziana Bonaldi, Florian Gnad, Matthias Mann

posted to silac phosphorylation phosphatase mass-spec drosophila by pedrobeltrao on 2009-10-21 18:17:20 as

A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen

PLoS Genetics, Vol. 5, No. 6. (2009), e1000527.

posted to signaling rnai drosophila dna-damage by pedrobeltrao on 2009-10-21 18:17:20 as

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	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature In Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to transcription-factor-binding gene-expression expression_patterns drosophila data bioinformatics by pedrobeltrao on 2009-11-04 19:42:35 as along with 13 people idonaldson maximilianh cajunsushi emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten
	Survey of large protein complexes in D. vulgaris reveals great structural diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 39. (29 September 2009), pp. 16580-16585. by Bong-Gyoon Han, Ming Dong, Haichuan Liu, et al.Lauren Camp, Jil Geller, Mary Singer, Terry C. Hazen, Megan Choi, H. Ewa Witkowska, David A. Ball, Dieter Typke, Kenneth H. Downing, Maxim Shatsky, Steven E. Brenner, John-Marc Chandonia, Mark D. Biggin, Robert M. Glaeser posted to structures protein-protein-interactions evolution drosophila complexes by pedrobeltrao on 2009-10-26 18:22:41 as
	Quantitative Morphological Signatures Define Local Signaling Networks Regulating Cell Morphology [My Copy] Science, Vol. 316, No. 5832. (22 June 2007), pp. 1753-1756. by Chris Bakal, John Aach, George Church, Norbert Perrimon posted to systems-biology signaling morphology drosophila by pedrobeltrao on 2009-10-21 18:17:32 as
	PhosphoPep[mdash]a phosphoproteome resource for systems biology research in Drosophila Kc167 cells [My Copy] Mol Syst Biol, Vol. 3 (16 October 2007) by Bernd Bodenmiller, Johan Malmstrom, Bertran Gerrits, et al.David Campbell, Henry Lam, Alexander Schmidt, Oliver Rinner, Lukas Mueller, Paul Shannon, Patrick Pedrioli, Christian Panse, Hoo-Keun Lee, Ralph Schlapbach, Ruedi Aebersold posted to phosphorylation drosophila data by pedrobeltrao on 2009-10-21 18:17:30 as
	Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans [My Copy] PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310. by David Begun, Alisha Holloway, Kristian Stevens, et al.Ladeana Hillier, Yu-Ping Poh, Matthew Hahn, Phillip Nista, Corbin Jones, Andrew Kern, Colin Dewey, Lior Pachter, Eugene Myers, Charles Langley posted to polymorphisms genome evolution drosophila by pedrobeltrao on 2009-10-21 18:17:29 as
	Dynamic evolution of the innate immune system in Drosophila [My Copy] Nat Genet, Vol. 39, No. 12. (December 2007), pp. 1461-1468. by Timothy Sackton, Brian Lazzaro, Todd Schlenke, Jay Evans, Dan Hultmark, Andrew Clark posted to genome gene-duplication evolution drosophila by pedrobeltrao on 2009-10-21 18:17:29 as
	Reverse engineering of force integration during mitosis in the Drosophila embryo [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Roy Wollman, Gul Civelekoglu-Scholey, Jonathan Scholey, Alex Mogilner posted to scientific-modelling embryo drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:26 as
	Evolution of Gene Expression in the Drosophila Olfactory System [My Copy] Molecular Biology and Evolution, Vol. 25, No. 6. (1 June 2008) by Artyom Kopp, Olga Barmina, Andrew Hamilton, Laura Higgins, Lauren McIntyre, Corbin Jones posted to gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:26 as
	The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila [My Copy] Cell, Vol. 134, No. 4. (2008), 610. posted to gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:24 as
	Evolutionary Plasticity of Polycomb/Trithorax Response Elements in Drosophila Species [My Copy] PLoS Biology, Vol. 6, No. 10. (1 October 2008), e261. by Arne Hauenschild, Leonie Ringrose, Christina Altmutter, Renato Paro, Marc Rehmsmeier posted to transcription-factor-binding gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:23 as
	Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e263. posted to gradients gene-regulation evolution drosophila by pedrobeltrao on 2009-10-21 18:17:22 as
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genetics, Vol. 5, No. 1. (2009), e1000330. posted to transcription-factors transcription-factor-binding pssm gene-regulation evolution drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:22 as
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nat Genet, Vol. 41, No. 3. (March 2009), pp. 299-307. by Julien Ayroles, Mary A. Carbone, Eric Stone, et al.Katherine Jordan, Richard Lyman, Michael Magwire, Stephanie Rollmann, Laura Duncan, Faye Lawrence, Robert Anholt, Trudy Mackay posted to trait-evolution modularity gene-expression evolution drosophila by pedrobeltrao on 2009-10-21 18:17:21 as
	Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi [My Copy] Nature, Vol. advanced online publication, No. 7241. (12 April 2009), pp. 987-992. by Jennifer Mummery-Widmer, Masakazu Yamazaki, Thomas Stoeger, et al.Maria Novatchkova, Sheetal Bhalerao, Doris Chen, Georg Dietzl, Barry Dickson, Juergen Knoblich posted to signaling rnai drosophila bioinformatics by pedrobeltrao on 2009-10-21 18:17:21 as
	Discovery of insect and human dengue virus host factors [My Copy] Nature, Vol. 458, No. 7241. (23 April 2009), pp. 1047-1050. by October Sessions, Nicholas Barrows, Jayme Souza-Neto, et al.Timothy Robinson, Christine Hershey, Mary Rodgers, Jose Ramirez, George Dimopoulos, Priscilla Yang, James Pearson, Mariano Garcia-Blanco posted to virus rnai drosophila data by pedrobeltrao on 2009-10-21 18:17:21 as
	Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics [My Copy] Mol Cell Proteomics (9 May 2009), pp. M800559-MCP200. by Maximiliane Hilger, Tiziana Bonaldi, Florian Gnad, Matthias Mann posted to silac phosphorylation phosphatase mass-spec drosophila by pedrobeltrao on 2009-10-21 18:17:20 as
	A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen [My Copy] PLoS Genetics, Vol. 5, No. 6. (2009), e1000527. posted to signaling rnai drosophila dna-damage by pedrobeltrao on 2009-10-21 18:17:20 as

pedrobeltrao's drosophila [17 articles] Export Sort

pedrobeltrao's tags

evolution	271
bioinformatics	238
systems-biology	164
data	129
review	121
networks	110
method	103
gene-expression	90
signaling	84
protein-protein-interactions	82
scerevisiae	73
structures	73
modelling	69
human	64
phosphorylation	52
motifs	45
genetic-interactions	37
bacteria	35
metabolic-networks	33
genome	31
opinion	30
synthetic-biology	30
protein-interactions	29
protein-evolution	28
gene-regulation	27
specificity	27
robustness	26
disease	26
modularity	24
network-reconstruction	24
transcription-factor-binding	22
microscopy	22
mass-spec	22
ecoli	21
proteomics	20
transcription	20
design	20
snps	20
evolvability	20
localization	19
rnai	18
cell-cycle	18
transcription-factors	18
yeast	18
dmelanogaster	18
expression	17
fba	17
mapk	17
drosophila	17
cancer	16
virus	15
mutations	15
saccharomyces-cerevisiae	14
expression-data	14
domains	14
host-pathogen-interactions	13
spatial-regulation	13
modeling	13
kinases	13
protein-dna-interactions	13
gene-duplication	12
network-evolution	12
sumo	12
genome-mapping	12
fungi	12
qtl	12
protein	11
domain-interactions	11
imaging	11
drug-interactions	11
ptm	11
neurobiology	11
binding-energy	10
mouse	10
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machine-learning	10
sequencing	10
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dynamics	9
chemical-screening	9
kinase	9
arabidopsis	9
signal-transduction	9
mating	8
micrornas	8
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polymorphisms	8
rna	8
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chromatin	8
celegans	8
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fitness	7
neutral-evolution	7
metagenomics	7
mammalian	7
microfluidics	7
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spatial	6
ubiquitylation	6
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development	6
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fret	6
silac	6
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oscillation	6
morphology	6
motif-finding	6
predictions	6
complexity	6
pathogens	6
structural-analysis	6
motility	6
genome-duplication	6
parts	5
genetics	5
hog	5
co-evolution	5
spombe	5
protein-protein-interfaces	5
parameter-estimation	5
single-cell	5
binding-sites	5
bayes	5
response-to-stress	4
phylogenetic-reconstruction	4
eqtls	4
phosphatase	4
biology	4
stress	4
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pathogen	4
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cell-decision	3
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sh3	3
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phylogenetic-tree	3
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essay	3
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gene-deletion	3
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svm	2
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population-evolution	2
c_elegans	2
fish	2
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spurpuratus	2
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gfp	2
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gaculeatus	1
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fold	1
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