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	Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000591. by Alexander Mitsos, Ioannis N. Melas, Paraskeuas Siminelakis, Aikaterini D. Chairakaki, Julio Saez-Rodriguez, Leonidas G. Alexopoulos posted to signaling phosphorylation modelling human drugs data by pedrobeltrao on 2009-12-04 19:40:46 as along with 4 people agomez karthikraman renatomilani shikin
	Multiple myeloma phosphotyrosine proteomic profile associated with FGFR3 expression, ligand activation, and drug inhibition [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 20127-20132. by Jonathan R. St-Germain, Paul Taylor, Jiefei Tong, et al.Lily L. Jin, Ana Nikolic, Ian I. Stewart, Robert M. Ewing, Moyez Dharsee, Zhihua Li, Suzanne Trudel, Michael F. Moran posted to signaling phosphorylation human data by pedrobeltrao on 2009-11-16 21:48:59 as along with 1 person williamgunn
	McsB Is a Protein Arginine Kinase That Phosphorylates and Inhibits the Heat-Shock Regulator CtsR [My Copy] Science, Vol. 324, No. 5932. (5 June 2009), pp. 1323-1327. by Jakob Fuhrmann, Andreas Schmidt, Silvia Spiess, et al.Anita Lehner, Kursad Turgay, Karl Mechtler, Emmanuelle Charpentier, Tim Clausen posted to phosphorylation kinase bacteria arginine-kinase by pedrobeltrao on 2009-11-11 00:34:27 as along with 2 people absterga neils
	Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. [My Copy] Molecular cell, Vol. 36, No. 2. (23 October 2009), pp. 326-339. by Chunaram Choudhary, Jesper V. Olsen, Christian Brandts, et al.Jürgen Cox, Pavankumar N. Reddy, Frank D. Böhmer, Volker Gerke, Dirk-E E. Schmidt-Arras, Wolfgang E. Berdel, Carsten Müller-Tidow, Matthias Mann, Hubert Serve posted to silac phosphorylation mass-spec kinase human data by pedrobeltrao on 2009-10-27 17:36:54 as along with 1 person kentsis
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] by Jv Olsen, B. Blagoev, F. Gnad, et al.B. Macek, C. Kumar, P. Mortensen, M. Mann posted to signaling phosphorylation human data by pedrobeltrao on 2009-10-21 18:18:03 as
	Large-scale phosphorylation analysis of mouse liver [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1488-1493. by Judit Villen, Sean Beausoleil, Scott Gerber, Steven Gygi posted to proteomics phosphorylation mouse data by pedrobeltrao on 2009-10-21 18:17:50 as
	Reproducible isolation of distinct, overlapping segments of the phosphoproteome [My Copy] Nat Meth, Vol. advanced online publication (11 February 2007) by Bernd Bodenmiller, Lukas Mueller, Markus Mueller, Bruno Domon, Ruedi Aebersold posted to systems-biology phosphorylation dmelanogaster data by pedrobeltrao on 2009-10-21 18:17:49 as
	Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 7. (13 February 2007), pp. 2193-2198. by An Chi, Curtis Huttenhower, Lewis Geer, et al.Joshua Coon, J. E. P. Syka, Dina Bai, Jeffrey Shabanowitz, Daniel Burke, Olga Troyanskaya, Donald Hunt posted to scerevisiae phosphorylation data bioinformatics by pedrobeltrao on 2009-10-21 18:17:46 as
	Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 7. (13 February 2007), pp. 2199-2204. by Henrik Molina, David Horn, Ning Tang, Suresh Mathivanan, Akhilesh Pandey posted to systems-biology signaling phosphorylation motifs by pedrobeltrao on 2009-10-21 18:17:46 as
	Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. [My Copy] Genome Biology, Vol. 8, No. 2. (22 February 2007), pp. 23-23. by Alan Moses, Jean-Karim Heriche, Richard Durbin posted to phosphorylation motifs kinases bioinformatics by pedrobeltrao on 2009-10-21 18:17:43 as
	Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [My Copy] Proceedings of the National Academy of Sciences (26 March 2007), pp. 0608638104-0608638104. by Alejandro Wolf-Yadlin, Sampsa Hautaniemi, Douglas Lauffenburger, Forest White posted to systems-biology signaling proteomics phosphorylation data by pedrobeltrao on 2009-10-21 18:17:42 as
	Phosphoproteomic identification of targets of the Arabidopsis sucrose nonfermenting-like kinase SnRK2.8 reveals a connection to metabolic processes [My Copy] Proceedings of the National Academy of Sciences (2 April 2007), pp. 0610208104-0610208104. by Ryoung Shin, Sophie Alvarez, Adrien Burch, Joseph Jez, Daniel Schachtman posted to phosphorylation data arabidopsis by pedrobeltrao on 2009-10-21 18:17:41 as
	Quantitative proteomic assessment of very early cellular signaling events [My Copy] Nat Biotech, Vol. 25, No. 5. (June 2007), pp. 566-568. by Joern Dengjel, Vyacheslav Akimov, Jesper Olsen, et al.Jakob Bunkenborg, Matthias Mann, Blagoy Blagoev, Jens Andersen posted to systems-biology signaling quantitative-data proteomics phosphorylation by pedrobeltrao on 2009-10-21 18:17:34 as
	PhosphoPep[mdash]a phosphoproteome resource for systems biology research in Drosophila Kc167 cells [My Copy] Mol Syst Biol, Vol. 3 (16 October 2007) by Bernd Bodenmiller, Johan Malmstrom, Bertran Gerrits, et al.David Campbell, Henry Lam, Alexander Schmidt, Oliver Rinner, Lukas Mueller, Paul Shannon, Patrick Pedrioli, Christian Panse, Hoo-Keun Lee, Ralph Schlapbach, Ruedi Aebersold posted to phosphorylation drosophila data by pedrobeltrao on 2009-10-21 18:17:30 as
	Dissection of the insulin signaling pathway via quantitative phosphoproteomics [My Copy] Proceedings of the National Academy of Sciences (11 February 2008), 0711713105. by Marcus Kruger, Irina Kratchmarova, Blagoy Blagoev, Yu-Hua Tseng, C. Kahn, Matthias Mann posted to signaling phosphorylation insulin human data by pedrobeltrao on 2009-10-21 18:17:29 as
	Signaling networks assembled by oncogenic EGFR and c-Met [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (7 January 2008), pp. 0707270105-0707270697. by Ailan Guo, Judit Villen, Jon Kornhauser, et al.Kimberly Lee, Matthew Stokes, Klarisa Rikova, Anthony Possemato, Julie Nardone, Gregory Innocenti, Randall Wetzel, Yi Wang, Joan MacNeill, Jeffrey Mitchell, Steven Gygi, John Rush, Roberto Polakiewicz, Michael Comb posted to systems-biology signaling phosphorylation disease by pedrobeltrao on 2009-10-21 18:17:28 as
	cdc2–cyclin B regulates eEF2 kinase activity in a cell cycle- and amino acid-dependent manner [My Copy] The EMBO Journal, Vol. 27, No. 7. (2008), 1005. posted to tor-pathway signaling phosphorylation human cell-cycle by pedrobeltrao on 2009-10-21 18:17:28 as
	Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis [My Copy] J Proteome Res, Vol. 7, No. 6. (June 2008), pp. 2458-2470. by Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, et al.Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J. Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt posted to proteomics phosphorylation data arabidopsis by pedrobeltrao on 2009-10-21 18:17:27 as
	Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, et al.Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama posted to phosphorylation data arabidopsis by pedrobeltrao on 2009-10-21 18:17:26 as
	GPS 2.0: Prediction of kinase-specific phosphorylation sites in hierarchy [My Copy] Molecular Cellular Proteomics (6 May 2008), pp. M700574-MCP200. by Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, Xuebiao Yao posted to phosphorylation-predictor phosphorylation bioinformatics by pedrobeltrao on 2009-10-21 18:17:26 as
	Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells [My Copy] Genes and Development, Vol. 21, No. 5. (1 March 2007), pp. 497-518. by Emily Arias, Johannes Walter posted to review pre-replication-complex phosphorylation cell-cycle by pedrobeltrao on 2009-10-21 18:17:25 as
	A quantitative atlas of mitotic phosphorylation [My Copy] Proc Natl Acad Sci U S A, Vol. 105, No. 31. (5 August 2008), pp. 10762-10767. posted to phosphorylation human data cell-cycle by pedrobeltrao on 2009-10-21 18:17:25 as
	Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications [My Copy] Annual Review of Pharmacology and Toxicology (2008), 081003141741032. posted to review proteomics phosphorylation by pedrobeltrao on 2009-10-21 18:17:23 as
	The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry [My Copy] Nat. Protocols, Vol. 3, No. 10. (September 2008), pp. 1630-1638. by Judit Villen, Steven Gygi posted to protocols proteomics phosphorylation method by pedrobeltrao on 2009-10-21 18:17:23 as
	Identification of CDK2 substrates in human cell lysates [My Copy] Genome Biology by Yong Chi, Markus Welcker, Asli Hizli, Jeffrey Posakony, Ruedi Aebersold, Bruce Clurman posted to phosphorylation kinase human data cdk2 by pedrobeltrao on 2009-10-21 18:17:23 as
	Predicting protein post-translational modifications using meta-analysis of proteome-scale data sets [My Copy] Molecular & Cellular Proteomics, Vol. 8, No. 2. (28 October 2008), pp. M800332-MCP200. by Daniel Schwartz, Michael F. Chou, George M. Church posted to ptm phosphorylation motifs motif-finding mass-spec by pedrobeltrao on 2009-10-21 18:17:23 as
	Temporal control of the dephosphorylation of Cdk substrates by mitotic exit pathways in budding yeast [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 42. (21 October 2008) by Fengzhi Jin, Hong Liu, Fengshan Liang, Raed Rizkallah, Myra Hurt, Yanchang Wang posted to scerevisiae phosphorylation phosphatase cell-cycle cdc28 by pedrobeltrao on 2009-10-21 18:17:23 as
	FANCI phosphorylation functions as a molecular switch to turn on the Fanconi anemia pathway [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 11. (2008), 1138. posted to ubiquitination phosphorylation human by pedrobeltrao on 2009-10-21 18:17:23 as
	Modulation of RNA polymerase II subunit composition by ubiquitylation [My Copy] Proceedings of the National Academy of Sciences (2008) posted to ubiquitination scerevisiae phosphorylation gene-expression by pedrobeltrao on 2009-10-21 18:17:22 as
	Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy [My Copy] Nat Biotech, Vol. advanced online publication, No. 1. (21 December 2008), pp. 77-83. by Jinyan Du, Paula Bernasconi, Karl Clauser, et al.D. Mani, Stephen Finn, Rameen Beroukhim, Melissa Burns, Bina Julian, Xiao Peng, Haley Hieronymus, Rebecca Maglathlin, Timothy Lewis, Linda Liau, Phioanh Nghiemphu, Ingo Mellinghoff, David Louis, Massimo Loda, Steven Carr, Andrew Kung, Todd Golub posted to phosphorylation kinases data cancer by pedrobeltrao on 2009-10-21 18:17:22 as
	Discovery of phosphorylation motif mixtures in phosphoproteomics data [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), 14. posted to phosphorylation motif-finding bioinformatics by pedrobeltrao on 2009-10-21 18:17:22 as
	Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry [My Copy] Proceedings of the National Academy of Sciences (14 January 2009) by Danielle Swaney, Craig Wenger, James Thomson, Joshua Coon posted to stem-cells phosphorylation human data by pedrobeltrao on 2009-10-21 18:17:22 as
	Large-Scale Structural Analysis of the Classical Human Protein Tyrosine Phosphatome [My Copy] Cell, Vol. 136, No. 2. (2009), 352. posted to structures phosphorylation phosphatase motifs human data by pedrobeltrao on 2009-10-21 18:17:22 as
	Phospho-Regulated SUMO Interaction Modules Connect the SUMO System to CK2 Signaling [My Copy] Molecular Cell, Vol. 33, No. 3. (2009), 400. posted to sumo phosphorylation motifs data co-regulation by pedrobeltrao on 2009-10-21 18:17:21 as
	Analytical strategies for phosphoproteomics [My Copy] PROTEOMICS (2009), NA. posted to review phosphorylation method by pedrobeltrao on 2009-10-21 18:17:21 as
	Sensing Chromosome Bi-Orientation by Spatial Separation of Aurora B Kinase from Kinetochore Substrates [My Copy] Science, Vol. 323, No. 5919. (6 March 2009), pp. 1350-1353. by Dan Liu, Gerben Vader, Martijn J. M. Vromans, Michael A. Lampson, Susanne M. A. Lens posted to phosphorylation mammalian localization cell-cycle by pedrobeltrao on 2009-10-21 18:17:21 as
	Quantitative analysis of cell signaling and drug action via mass spectrometry-based systems level phosphoproteomics [My Copy] PROTEOMICS, Vol. 9, No. 6. (2009), 1469. posted to signaling review phosphorylation mass-spec by pedrobeltrao on 2009-10-21 18:17:21 as
	Principles of ubiquitin and SUMO modifications in DNA repair [My Copy] Nature, Vol. 458, No. 7237. (26 March 2009), pp. 461-467. by Steven Bergink, Stefan Jentsch posted to sumo review phosphorylation dna-damage by pedrobeltrao on 2009-10-21 18:17:21 as
	Host Cell Interactome of Tyrosine-Phosphorylated Bacterial Proteins [My Copy] Cell Host & Microbe, Vol. 5, No. 4. (2009), 397. posted to sh2 phosphorylation mass-spec host-pathogen-interactions by pedrobeltrao on 2009-10-21 18:17:21 as
	Weak functional constraints on phosphoproteomes [My Copy] Trends in Genetics, Vol. 25, No. 5. (2009), 193. posted to phosphorylation evolution bioinformatics by pedrobeltrao on 2009-10-21 18:17:20 as
	Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics [My Copy] Mol Cell Proteomics (9 May 2009), pp. M800559-MCP200. by Maximiliane Hilger, Tiziana Bonaldi, Florian Gnad, Matthias Mann posted to silac phosphorylation phosphatase mass-spec drosophila by pedrobeltrao on 2009-10-21 18:17:20 as
	A spatial gradient coordinates cell size and mitotic entry in fission yeast [My Copy] Nature, Vol. advanced online publication, No. 7248. (27 May 2009), pp. 857-860. by James Moseley, Adeline Mayeux, Anne Paoletti, Paul Nurse posted to spombe phosphorylation gradients cell-cycle by pedrobeltrao on 2009-10-21 18:17:20 as
	C. elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins [My Copy] Journal of Proteome Research, No. ja. by Dorota Zielinska, Florian Gnad, Monika Jedrusik-Bode, Jacek Wiśniewski, Matthias Mann posted to phosphorylation-predictor phosphorylation evolution data celegans bioinformatics by pedrobeltrao on 2009-10-21 18:17:20 as
	Positive Selection of Tyrosine Loss in Metazoan Evolution [My Copy] Science (9 July 2009), 1174301. by Chris Heng, Adrian Pasculescu, Wendell Lim, Tony Pawson, Gary Bader, Rune Linding posted to tyrosine-kinase phosphorylation evolution complexity by pedrobeltrao on 2009-10-21 18:17:20 as
	A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation [My Copy] Mol Cell Proteomics (14 July 2009), pp. M800307-MCP200. by Vinh Nguyen, Lulu Cao, Jonathan T. Lin, et al.Norris Hung, Anna Ritz, Kebing Yu, Radu Jianu, Samuel P. Ulin, Benjamin J. Raphael, David H. Laidlaw, Laurent Brossay, Arthur R. Salomon posted to silac signaling phosphorylation mass-spec human data by pedrobeltrao on 2009-10-21 18:17:19 as
	Comparative Analysis Reveals Conserved Protein Phosphorylation Networks Implicated in Multiple Diseases [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), ra39. by Chris S. Tan, Bernd Bodenmiller, Adrian Pasculescu, et al.Marko Jovanovic, Michael O. Hengartner, Claus Jorgensen, Gary D. Bader, Ruedi Aebersold, Tony Pawson, Rune Linding posted to phosphorylation human evolution disease by pedrobeltrao on 2009-10-21 18:17:19 as
	Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics [My Copy] Mol Cell Proteomics (3 August 2009), pp. M900285-MCP200. by Cuiping Pan, Jesper V. Olsen, Henrik Daub, Matthias Mann posted to silac phosphorylation mass-spec inhibitor drugs by pedrobeltrao on 2009-10-21 18:17:19 as
	Phosphoproteomic Analysis of Human Embryonic Stem Cells [My Copy] Cell Stem Cell, Vol. 5, No. 2. (2009), 204. posted to stem-cells phosphorylation human data cell-fate by pedrobeltrao on 2009-10-21 18:17:19 as
	Direct activation of protein kinases by unanchored polyubiquitin chains [My Copy] Nature, Vol. advance online publication, No. 7260. (12 August 2009), pp. 114-119. by Zong-Ping Xia, Lijun Sun, Xiang Chen, et al.Gabriel Pineda, Xiaomo Jiang, Anirban Adhikari, Wenwen Zeng, Zhijian Chen posted to ubiquitylation signaling phosphorylation kinase by pedrobeltrao on 2009-10-21 18:17:19 as
	Applying mass spectrometry-based proteomics to genetics, genomics and network biology [My Copy] Nat Rev Genet, Vol. 10, No. 9. (September 2009), pp. 617-627. by Matthias Gstaiger, Ruedi Aebersold posted to review ptm phosphorylation mass-spec genetic-interactions by pedrobeltrao on 2009-10-21 18:17:19 as

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lumier	1
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go	1
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bibtex-import	1
mycobacterium-tuberculosis	1
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hmm	1
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cell-membrane	1
conference	1
sscrofa	1
molecular-biology	1
regulation-of-cell-shape	1
camp-mediated-signaling_bp	1
immune-effector-process_bp	1

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