pekrau's library 101 articles Export

	An active registry for bioinformatics web services. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2090-2091. by S. Pettifer, D. Thorne, P. McDermott, et al.T. Attwood, J. Baran, J. C. Bryne, T. Hupponen, D. Mowbray, G. Vriend posted to web_services web software databases bioinformatics by pekrau on 2009-11-18 10:03:00 as along with 14 people and 2 groups joachimbaran pkonings dswan niallhaslam n00c druvus guhjy flipip23 chrisamiller nuin dbk kshameer dullhunk neils Bioinformatics Journal picks
	Better Bioinformatics Through Usability Analysis. [My Copy] Bioinformatics (Oxford, England) (9 December 2008) by Davide Bolchini, Anthony Finkelstein, Vito Perrone, Sylvia Nagl posted to web software bioinformatics by pekrau on 2009-11-18 10:00:35 as along with 21 people and 1 group FabienneGranier guhjy svozil pkonings dbk rmhirsk niallhaslam renatomilani chrisamiller Yanno fgibson zimbo1 druvus allysonlister dswan behindtherabbit neils dullhunk sjcockell nuin jmeppley Bioinformatics
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to software open_source databases bioinformatics by pekrau on 2009-11-18 09:53:58 as along with 37 people and 9 groups Geknitics Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose oteri cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus jago kshameer operon svozil Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted to workflow bioinformatics by pekrau on 2009-11-18 09:52:24 as along with 21 people and 5 groups GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor barry ppgardne Convention on Knowledge Commons structural_bioinformatics McCammon Bioinformatics Journal picks
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to workflow databases bioinformatics by pekrau on 2009-11-18 09:49:14 as along with 56 people and 7 groups Sergey_gerbek mordiano remoteFuture Yanno aaltenburger marekrud guhjy dolchan frohike operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol barry sdaehne druvus Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks Bioinformatics - CRUK ccsbs BergmanLab structural_bioinformatics McCammon
	Using Grid technology for computationally intensive applied bioinformatics analyses. [My Copy] In silico biology, Vol. 6, No. 6. (2006), pp. 495-504. by Jorge Andrade, Lisa Berglund, Mathias Uhlén, Jacob Odeberg posted to grid bioinformatics by pekrau on 2009-11-13 09:33:58 as
	A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation. [My Copy] Proteomics, Vol. 8, No. 14. (July 2008), pp. 2832-2839. by Lisa Berglund, Erik Björling, Kalle Jonasson, et al.Johan Rockberg, Linn Fagerberg, Cristina Al-Khalili Szigyarto, Asa Sivertsson, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:32:13 as along with 1 person niallhaslam
	A genecentric Human Protein Atlas for expression profiles based on antibodies. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 10. (1 October 2008), pp. 2019-2027. by Lisa Berglund, Erik Björling, Per Oksvold, et al.Linn Fagerberg, Anna Asplund, Cristina Al-Khalili A. Szigyarto, Anja Persson, Jenny Ottosson, Henrik Wernérus, Peter Nilsson, Emma Lundberg, Asa Sivertsson, Sanjay Navani, Kenneth Wester, Caroline Kampf, Sophia Hober, Fredrik Pontén, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:31:40 as along with 2 people daed guhjy
	RESTful Web service composition with BPEL for REST [My Copy] Data & Knowledge Engineering, Vol. 68, No. 9. (September 2009), pp. 851-866. by Cesare Pautasso posted to workflow web_services rest bpel by pekrau on 2009-11-09 13:22:37 as
	Web API for biology with a workflow navigation system [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W11-16. by Yeondae Kwon, Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara posted to workflow web_services soap rest bioinformatics by pekrau on 2009-11-09 13:10:46 as along with 8 people and 1 group tprpip dswan nuin cassj druvus dullhunk guhjy daforerog Bioinformatics
	Building a drug–target network and its applications. [My Copy] Expert Opinion on Drug Discovery, Vol. 4, No. 11. (13 October 2009), pp. 1-13. by Soyoung Lee, Keunwan Park, Dongsup Kim posted to systems_biology networks drug_targets drug_discovery chemical_biology bioinformatics by pekrau on 2009-10-19 08:48:49 as
	Mining large heterogeneous data sets in drug discovery [My Copy] Expert Opinion on Drug Discovery, Vol. 4, No. 10. (October 2009), pp. 995-1004. by David J. Wild posted to web_services drug_discovery databases data_mining bioinformatics by pekrau on 2009-09-23 08:38:24 as
	Web Services: Been There, Done That? [My Copy] IEEE Intelligent Systems, Vol. 18, No. 1. (January 2003), pp. 72-85. by Steffen Staab, Wil van der Aalst, V. Richard Benjamins, et al.Amit Sheth, John A. Miller, Christoph Bussler, Alexander Maedche, Dieter Fensel, Dennis Gannon posted to workflow web_services by pekrau on 2009-09-22 09:39:27 as along with 3 people martinrytter Jens_Lyn jahrynx
	Architecture of the World Wide Web, Volume One [My Copy] (15 December 2004) edited by Ian Jacobs, Norman Walsh posted to web by pekrau on 2009-09-22 09:21:10 as along with 1 person emiliorp
	Web Architecture from 50,000 feet [My Copy] (September 1998) by Tim Berners-Lee posted to web by pekrau on 2009-09-22 09:18:17 as
	Open access chemical and clinical probes to support drug discovery [My Copy] Nature Chemical Biology, Vol. 5, No. 7. (01 July 2009), pp. 436-440. by Aled M. Edwards, Chas Bountra, David J. Kerr, Timothy M. Willson posted to open_access drug_discovery chemical_biology by pekrau on 2009-09-17 17:07:21 as along with 2 people reyez neils
	Open-source science to enable drug discovery [My Copy] Drug Discovery Today, Vol. 13, No. 17-18. (September 2008), pp. 731-733. by A. Edwards posted to structural_biology open_access drug_targets drug_discovery by pekrau on 2009-09-17 10:22:54 as along with 7 people agomez guhjy nicklynch hpiwowar dullhunk zimbo1 psique
	Open-source science to enable drug discovery [My Copy] (2008) by Edwards posted to structural_biology open_access drug_targets drug_discovery by pekrau on 2009-09-17 10:17:48 as
	Bermuda Principles meet structural biology. [My Copy] (2008) by A. Edwards posted to structural_biology open_source by pekrau on 2009-09-17 10:12:06 as
	The Workflow Reference Model: 10 Years On [My Copy] In Workflow Handbook 2004 by Martin Senger, Peter Rice, Tom Oinn posted to workflow by pekrau on 2009-09-15 14:19:34 as along with 2 people and 1 group nozebacle moborg StFX Centre for Logic and Information
	Biowep: a workflow enactment portal for bioinformatics applications. [My Copy] BMC bioinformatics, Vol. 8 Suppl 1 (2007) by P. Romano, E. Bartocci, G. Bertolini, et al.F. De Paoli, D. Marra, G. Mauri, E. Merelli, L. Milanesi posted to workflow web bioinformatics by pekrau on 2009-09-15 14:10:18 as along with 7 people and 1 group flbarroso Effie daforerog druvus guhjy moborg dullhunk NaCTeM
	A workflow for mutation extraction and structure annotation. [My Copy] J Bioinform Comput Biol, Vol. 5, No. 6. (December 2007), pp. 1319-1337. by R. Kanagasabai, K. H. Choo, S. Ranganathan, C. J. Baker posted to structural_biology workflow proteins bioinformatics by pekrau on 2009-09-15 14:07:23 as along with 1 person dullhunk
	KNIME: The Konstanz Information Miner [My Copy] Data Analysis, Machine Learning and Applications (2008), pp. 319-326. by Michael R. Berthold, Nicolas Cebron, Fabian Dill, et al.Thomas R. Gabriel, Tobias Kötter, Thorsten Meinl, Peter Ohl, Christoph Sieb, Kilian Thiel, Bernd Wiswedel posted to workflow software bioinformatics by pekrau on 2009-09-10 15:51:41 as
	The case for open-access chemical biology. A strategy for pre-competitive medicinal chemistry to promote drug discovery. [My Copy] EMBO reports, Vol. 10, No. 9. (September 2009), pp. 941-945. by Johan Weigelt posted to open_access medicinal_chemistry drug_targets drug_discovery chemical_biology by pekrau on 2009-09-08 14:55:22 as along with 1 group SGC Stockholm
	Integrating scientific data for drug discovery and development using the Life Sciences Grid [My Copy] Expert Opinion on Drug Discovery, Vol. 4, No. 6. (June 2009), pp. 687-699. by Ernst R. Dow, James B. Hughes, Susie M. Stephens, Vaibhav A. Narayan, Richard W. Bishop posted to workflow web_services drug_targets by pekrau on 2009-09-04 15:02:48 as along with 3 people and 1 group joergkurtwegner dullhunk nicklynch Drug-Design
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted to systems_biology by pekrau on 2009-09-04 15:00:48 as along with 14 people and 1 group robertrentzsch apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale Orengo Group Journal Picks
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to visualization systems_biology software by pekrau on 2009-09-04 14:58:22 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Drug target central [My Copy] Expert Opinion on Drug Discovery, Vol. 4, No. 8. (August 2009), pp. 857-872. by Lee Harland, Anna Gaulton posted to drug_targets by pekrau on 2009-09-04 14:56:03 as along with 1 person dullhunk
	Taverna Workflows: Syntax and Semantics [My Copy] e-Science and Grid Computing, IEEE International Conference on In e-Science and Grid Computing, IEEE International Conference on (2007), pp. 441-448. by Daniele Turi, Paolo Missier, Carole Goble, David D. Roure, Tom Oinn posted to workflow web_services bioinformatics by pekrau on 2009-09-04 14:46:55 as along with 2 people druvus alanrw
	Integrating ARC Grid Middleware with Taverna Workflows. [My Copy] Bioinformatics (19 March 2008) by Hajo N N. Krabbenhöft, Steffen Möller, Daniel Bayer posted to workflow grid bioinformatics by pekrau on 2009-09-04 14:46:14 as along with 3 people dullhunk GeeSharpMinor guhjy
	BioMart--biological queries made easy. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 22. by Damian Smedley, Syed Haider, Benoit Ballester, et al.Richard Holland, Darin London, Gudmundur Thorisson, Arek Kasprzyk posted to workflow bioinformatics by pekrau on 2009-09-04 14:42:45 as along with 29 people and 4 groups aaltenburger artaban421 sjcockell lmichan jdbowes fgibson gangcai daforerog jfr fisherp allysonlister Stew grahamc dswan Zephyrus renatomilani guhjy natstreet pablocarb Cortel dbk mitko brianb ajaymalik neils kshameer dullhunk druvus cisevol Bioinformatics - CRUK Bioinformatics Roswell Cancer Crosstalk BergmanLab
	myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences [My Copy] Data Integration in the Life Sciences (2007), pp. 59-70. by Steve Pettifer, Katherine Wolstencroft, Pinar Alper, et al.Teresa Attwood, Alain Coletta, Carole Goble, Peter Li, Philip Mcdermott, James Marsh, Thomas Oinn, James Sinnott, David Thorne posted to workflow bioinformatics by pekrau on 2009-09-04 14:41:38 as along with 3 people flipip23 druvus alanrw
	Taverna: lessons in creating a workflow environment for the life sciences [My Copy] Concurrency and Computation: Practice and Experience, Vol. 18, No. 10. (August 2006), pp. 1067-1100. by Tom Oinn, Mark Greenwood, Matthew Addis, et al.Nedim M. Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe posted to workflow bioinformatics by pekrau on 2009-09-04 14:40:28 as along with 6 people druvus moborg wnpx toshiaki_katayama alanrw dgroth
	RESTful Web Services [My Copy] (08 May 2007) by Leonard Richardson, Sam Ruby posted to web_services web software rest by pekrau on 2009-09-01 21:49:12 as along with 16 people and 2 groups germoglio mircea flashfonic thegoose2 somebody deslocator jvalentini samuelsouza guhjy dullhunk gunv ket erisu edvin jasmithoffice tharris Bioinformatics Social Web
	Guest Editor's Introduction: Cloud Computing for the Sciences [My Copy] Computing in Science and Engineering, Vol. 11, No. 4. (2009), pp. 10-11. by Francis Sullivan posted to cloud_computing by pekrau on 2009-09-01 13:51:18 as along with 1 person dullhunk
	Building an Open Cloud [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1656-1657. by Michael R. Nelson posted to cloud_computing by pekrau on 2009-09-01 13:34:29 as along with 8 people and 5 groups osa claudiushauptmann aan biologyeditors dswan reyez jago dullhunk Ubicomp Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services Poverty Alleviation from Access to Knowledge
	The Need for Centralization of Computational Biology Resources [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000372. by Fran Lewitter, Michael Rebhan, Brent Richter, David Sexton posted to web_services databases bioinformatics by pekrau on 2009-09-01 13:33:39 as along with 18 people and 4 groups fgibson Fournier34 flbarroso natstreet jago kongl FabienneGranier druvus nuin VGreiff operon aprasad chrisamiller jmeppley dswan reyez kshameer dullhunk CBD Convention on Biological Diversity Poverty Alleviation from Access to Knowledge Convention on Knowledge Commons Bioinformatics
	WebLab: a data-centric, knowledge-sharing bioinformatic platform [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W33-39. by Xiaoqiao Liu, Jianmin Wu, Jun Wang, et al.Xiaochuan Liu, Shuqi Zhao, Zhe Li, Lei Kong, Xiaocheng Gu, Jingchu Luo, Ge Gao posted to workflow web_services bioinformatics by pekrau on 2009-09-01 13:29:22 as along with 14 people applebyb fgibson abhishek_tiwari dullhunk leemond31 pininforthefjords nuin daforerog druvus operon guhjy psique renatomilani neils
	Design and Architecture of Web Services for Simulation of Biochemical Systems [My Copy] Data Integration in the Life Sciences (2009), pp. 182-195. by Joseph Dada, Pedro Mendes posted to web_services systems_biology workflow software bioinformatics by pekrau on 2009-09-01 13:27:10 as along with 3 people allysonlister mtaschuk dullhunk
	What is Web 2.0: Design Patterns and Business Models for the Next Generation of Software [My Copy] Social Science Research Network Working Paper Series (22 August 2007) by Tim Oreilly posted to web_services workflow web software by pekrau on 2009-09-01 08:20:51 as along with 23 people and 2 groups AnthonySoprano mrp3rs0n mkfabian LibraryDemoMtpx aboutlas tanyacovi6 artaban421 eudominguezmartin MARCOUNAM adipple eloyvaltierra aalves paulapetry lmichan public2 chrisd sototozo captsolo josh_lasson ChenZhe marclijour warding rrbarb New Media - IMV Social computing
	Experience using web services for biological sequence analysis. [My Copy] Briefings in bioinformatics, Vol. 9, No. 6. (11 November 2008), pp. 493-505. by Heinz Stockinger, Teresa Attwood, Shahid Nadeem N. Chohan, et al.Richard Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurelie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman posted to web_services workflow soap rest bioinformatics by pekrau on 2009-08-30 19:58:04 as along with 13 people and 1 group daforerog svozil behindtherabbit dswan allysonlister alaninmcr jmeppley Cortel kshameer guhjy druvus dullhunk nuin Bioinformatics
	Restful web services vs. "big"' web services: making the right architectural decision [My Copy] In WWW '08: Proceeding of the 17th international conference on World Wide Web (2008), pp. 805-814. by Cesare Pautasso, Olaf Zimmermann, Frank Leymann posted to web_services workflow soap rest by pekrau on 2009-08-30 19:51:09 as along with 11 people and 1 group Iully lauragon thegoose2 architect aquaryus fukumori jvalentini samuelsouza dullhunk tharris pautasso LInS
	Analysis of Web Services Composition Languages: The Case of BPEL4WS [My Copy] Conceptual Modeling - ER 2003 (2003), pp. 200-215. by Petia Wohed, Wil Aalst, Marlon Dumas, Arthur Hofstede posted to web_services workflow by pekrau on 2009-08-28 12:23:52 as
	Developing web services choreography standards: the case of REST vs. SOAP [My Copy] Decis. Support Syst., Vol. 40, No. 1. (July 2005), pp. 9-29. by Michael Z. Muehlen, Jeffrey V. Nickerson, Keith D. Swenson posted to web_services rest by pekrau on 2009-08-28 11:34:01 as along with 4 people and 2 groups fgeller lendle dansullivanblk cmalek Knowledge_Management Social_Learning_Software_Lab
	BPEL for REST [My Copy] In 7th International Conference on Business Process Management (BPM08) (September 2008), pp. 278-293. by Cesare Pautasso posted to web_services workflow rest by pekrau on 2009-08-27 16:09:46 as
	Web services and workflow management for biological resources. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 4 (1 December 2005) by P. Romano, D. Marra, L. Milanesi posted to workflow software bioinformatics by pekrau on 2009-08-27 15:21:47 as along with 5 people and 1 group druvus irenas moborg fisherp daniel_schober dbk-lab
	Design and Implementation of the YAWL system [My Copy] (2004) by W. Van der Aalst, L. Aldred, M. Dumas, A. Ter posted to workflow software by pekrau on 2009-08-27 15:18:53 as along with 3 people and 1 group saschask charoy ss363 ecoo-pe
	Translating unstructured workflow processes to readable BPEL: Theory and implementation [My Copy] Information and Software Technology, Vol. 50, No. 3. (February 2008), pp. 131-159. by Wil M. van der Aalst, Bisgaard posted to workflow by pekrau on 2009-08-27 15:18:05 as along with 1 person japarejo
	Automatic annotation of Web services based on workflow definitions [My Copy] ACM Trans. Web, Vol. 2, No. 2. (April 2008), pp. 1-34. by Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton, Robert Stevens, Carole A. Goble posted to web_services workflow by pekrau on 2009-08-27 15:16:08 as along with 2 people fgibson dullhunk
	Bio-workflows with BizTalk: using a commercial workflow engine for eScience [My Copy] e-Science and Grid Computing, 2005. First International Conference on In e-Science and Grid Computing, 2005. First International Conference on (2005), 8 pp.. by A. Rygg, S. Mann, P. Roe, On Wong posted to workflow software bioinformatics by pekrau on 2009-08-27 15:14:37 as along with 1 person moborg

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workflow	50
bioinformatics	49
software	24
web_services	24
proteins	16
structural_biology	16
nmr	11
web	11
systems_biology	8
databases	7
rest	7
drug_discovery	6
drug_targets	6
cloud_computing	4
open_access	4
proteomics	4
signalling	4
chemical_biology	3
grid	3
soap	3
gene_expression	2
networks	2
nmr_assignment	2
open_source	2
visualization	2
bpel	1
chemistry	1
data_mining	1
drug_design	1
mass_spectrometry	1
medicinal_chemistry	1
rdf	1
review	1
taxonomy	1

pekrau's library 101 articles Export

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