pengchy's microarray [37 articles] Export

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	Limitations and possibilities of small RNA digital gene expression profiling [My Copy] Nat Meth, Vol. 6, No. 7. (01 July 2009), pp. 474-476. by Sam E. V. Linsen, Elzo de Wit, Georges Janssens, et al.Sheila Heater, Laura Chapman, Rachael K. Parkin, Brian Fritz, Stacia K. Wyman, Ewart de Bruijn, Emile E. Voest, Scott Kuersten, Muneesh Tewari, Edwin Cuppen posted to next-generation-sequencing mirna microarray comparative_analysis by pengchy on 2009-09-13 02:59:37 as along with 8 people and 2 groups jfr vingron guhjy lp2 timhubbard stajich gdb fpattyn RGASP Mycology
	EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 493. by G. Barton, J. Abbott, N. Chiba, et al.D. W. Huang, Y. Huang, M. Krznaric, J. Mack Smith, A. Saleem, B. T. Sherman, B. Tiwari, C. Tomlinson, T. Aitman, J. Darlington, L. Game, M. J. E. Sternberg, S. A. Butcher posted to microarray platform by pengchy on 2009-04-08 13:22:01 as along with 11 people gpyle jfr dullhunk rdiaz guhjy shikin nuin Terkko lptolik GeeSharpMinor dansullivanblk
	Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), e60. by Vivek Jayaswal, Mark Lutherborrow, David D. F. Ma, Yee Hwa Yang posted to expression microarray microrna target by pengchy on 2009-03-24 06:44:09 as along with 6 people and 1 group sterovetta tonamswish guhjy nuin ericsuh ealloza microRNA
	Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas. [My Copy] Cancer Cell, Vol. 12, No. 3. (September 2007), pp. 215-229. by G. A. Calin, C. G. Liu, M. Ferracin, et al.T. Hyslop, R. Spizzo, C. Sevignani, M. Fabbri, A. Cimmino, E. J. Lee, S. E. Wojcik, M. Shimizu, E. Tili, S. Rossi, C. Taccioli, F. Pichiorri, X. Liu, S. Zupo, V. Herlea, L. Gramantieri, G. Lanza, H. Alder, L. Rassenti, S. Volinia, T. D. Schmittgen, T. J. Kipps, M. Negrini, C. M. Croce posted to microarray microrna ncrna ucr by pengchy on 2008-12-24 08:12:56 as along with 5 people and 1 group galka8_diploma jfr andersbj maximilianh fpattyn microRNA
	Optimal Designs for One- and Two-Color Microarrays Using Mixed Models: A Comparative Evaluation of Their Efficiencies [My Copy] Journal of Computational Biology, Vol. 0, No. 0. (0), pp. 1-17. by Valeria L. Passos, Frans E. S. Tan, Bjorn Winkens, Martijn P. F. Berger posted to design microarray model by pengchy on 2008-12-22 04:07:53 as along with 2 people guhjy druvus
	A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data [My Copy] BMC Bioinformatics, Vol. 9 (13 November 2008), 480. by Luca Corradi, Marco Fato, Ivan Porro, Silvia Scaglione, Livia Torterolo posted to dchip microarray software webserver by pengchy on 2008-11-23 03:20:44 as along with 3 people jfr guhjy bertelsen
	Gene set analyses for interpreting microarray experiments on prokaryotic organisms [My Copy] BMC Bioinformatics, Vol. 9 (05 November 2008), 469. by Nathan L. Tintle, Aaron A. Best, Matthew Dejongh, et al.Dirk Vanbruggen, Fred Heffron, Steffen Porwollik, Ronald C. Taylor posted to comparative_analysis gene-set-enrichment microarray by pengchy on 2008-11-23 02:46:21 as along with 3 people jfr dswan barriot
	Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays [My Copy] BMC Genomics, Vol. 9 (07 November 2008), 529. by Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski posted to comparative_analysis evaluate exon-array microarray by pengchy on 2008-11-21 00:45:38 as along with 6 people bertelsen jfr guhjy ivanek dswan caseybrown
	ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets [My Copy] Genome Biology, Vol. 9, No. 11. (2008) by Patrick Killion, Vishwanath Iyer posted to microarray software by pengchy on 2008-11-19 00:32:40 as along with 9 people jfr aramesh2 guhjy rdiaz lptolik barriot natstreet shikin druvus
	Boolean implication networks derived from large scale, whole genome microarray datasets [My Copy] Genome Biology, Vol. 9 (30 October 2008), R157. by Debashis Sahoo, David L. Dill, Andrew J. Gentles, Robert Tibshirani, Sylvia K. Plevritis posted to bayes_network microarray by pengchy on 2008-11-19 00:31:13 as along with 8 people dolchan zufar jfr rdiaz imina guhjy mdperry bcondon
	Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods [My Copy] BMC Biotechnology, Vol. 8 (11 September 2008), 69. by Robert A. Ach, Hui Wang, Bo Curry posted to comparative_analysis microarray microrna by pengchy on 2008-10-20 07:09:29 as along with 7 people and 1 group mchelen felsani jfr jsnowdon druvus guhjy giovenko microRNA
	BATS: a Bayesian user-friendly software for analyzing time series microarray experiments. [My Copy] BMC bioinformatics, Vol. 9 (06 October 2008), 415. by Claudia Angelini, Luisa Cutillo, Daniela De Canditiis, Margherita Mutarelli, Marianna Pensky posted to bayes microarray software time-course by pengchy on 2008-10-20 02:12:52 as along with 1 person guhjy
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted to comparative_analysis deep-sequencing evaluate microarray by pengchy on 2008-10-19 04:05:39 as along with 25 people manduca hzoltan GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz
	Missing value estimation methods for DNA microarrays. [My Copy] Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 520-525. by O. Troyanskaya, M. Cantor, G. Sherlock, et al.P. Brown, T. Hastie, R. Tibshirani, D. Botstein, R. B. Altman posted to knn method microarray missing-value by pengchy on 2008-10-15 04:04:06 as along with 4 people colmryan btiwari lyongu naegele
	Robust singular value decomposition analysis of microarray data [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 23. (11 November 2003), pp. 13167-13172. by Li Liu, Douglas M. Hawkins, Sujoy Ghosh, Stanley S. Young posted to analysis microarray svd by pengchy on 2008-10-15 01:55:13 as along with 1 person eckart_bindewald
	The effect of replication on gene expression microarray experiments [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1620-1627. by Paul Pavlidis, Qinghong Li, William S. Noble posted to evaluate microarray replication by pengchy on 2008-10-14 12:17:56 as along with 1 person heliopais
	Comprehensive comparison of six microarray technologies. [My Copy] Nucleic Acids Res, Vol. 32, No. 15. (2004) by C. L. Yauk, M. L. Berndt, A. Williams, G. R. Douglas posted to comparative_analysis evaluate microarray by pengchy on 2008-10-14 11:53:55 as along with 3 people mayercd yoh ghattem
	Reliability and reproducibility issues in DNA microarray measurements. [My Copy] Trends Genet (23 December 2005) by Sorin Draghici, Purvesh Khatri, Aron C C. Eklund, Zoltan Szallasi posted to evaluate microarray review by pengchy on 2008-10-14 11:44:34 as along with 6 people surajitray Zephyrus guhjy textoris jfr ghattem
	Reproducibility of Gene Expression Signature-Based Predictions in Replicate Experiments [My Copy] Clin Cancer Res, Vol. 12, No. 6. (15 March 2006), pp. 1721-1727. by Keith Anderson, Kenneth R. Hess, Mini Kapoor, et al.Stephen Tirrell, Jean Courtemanche, Bailiang Wang, Yun Wu, Yun Gong, Gabriel N. Hortobagyi, Fraser W. Symmans, Lajos Pusztai posted to comparative_analysis evaluate microarray by pengchy on 2008-10-14 11:17:14 as
	Microarray analysis of gene expression: considerations in data mining and statistical treatment [My Copy] Physiol. Genomics, Vol. 25, No. 3. (16 May 2006), pp. 355-363. by Joseph S. Verducci, Vincent F. Melfi, Shili Lin, Zailong Wang, Sashwati Roy, Chandan K. Sen posted to analysis data_mining microarray review statistics by pengchy on 2008-10-14 11:11:33 as along with 3 people meanerelk guhjy isimpson
	Cross-study validation and combined analysis of gene expression microarray data [My Copy] Biostat, Vol. 9, No. 2. (1 April 2008), pp. 333-354. by Elizabeth Garrett-Mayer, Giovanni Parmigiani, Xiaogang Zhong, Leslie Cope, Edward Gabrielson posted to comparative_analysis evaluate microarray by pengchy on 2008-10-14 11:09:10 as along with 2 people daforerog guhjy
	Analysis of matched mRNA measurements from two different microarray technologies. [My Copy] Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 405-412. by W. P. Kuo, T. K. Jenssen, A. J. Butte, L. Ohno-Machado, I. S. Kohane posted to comparative_analysis evaluate microarray by pengchy on 2008-10-14 10:58:24 as along with 3 people lwaldron floatingpoint jeremymiller
	Functional discovery via a compendium of expression profiles. [My Copy] Cell, Vol. 102, No. 1. (7 July 2000), pp. 109-126. by T. R. Hughes, M. J. Marton, A. R. Jones, et al.C. J. Roberts, R. Stoughton, C. D. Armour, H. A. Bennett, E. Coffey, H. Dai, Y. D. He, M. J. Kidd, A. M. King, M. R. Meyer, D. Slade, P. Y. Lum, S. B. Stepaniants, D. D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, S. H. Friend posted to co-expression functional_inference microarray by pengchy on 2008-10-14 03:51:11 as along with 12 people and 3 groups svozil raiyar camster lfriedl nirfriedman nickluscombe patrycjam patrycja_missiuro naegele chasmand roys TheresaNiederberger dbk-lab kdl EBI-regulation
	Missing value estimation for DNA microarray gene expression data: local least squares imputation [My Copy] Bioinformatics, Vol. 21, No. 2. (15 January 2005), pp. 187-198. by Hyunsoo Kim, Gene H. Golub, Haesun Park posted to algorithm method microarray missing-value by pengchy on 2008-10-13 06:58:10 as along with 2 people colmryan ipark-kaist
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted to analysis cluster display functional_inference method microarray software by pengchy on 2008-10-12 12:35:27 as along with 34 people and 3 groups antonkratz potatongy drungows colmryan jplatig rsaito Neeperando baldigroup daforerog karinlag ronglais operon Borelli macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys kdl Bioinformatics BUiGEM
	Exploring the new world of the genome with DNA microarrays. [My Copy] Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 33-37. by P. O. Brown, D. Botstein posted to method microarray review by pengchy on 2008-10-12 12:27:48 as along with 3 people and 1 group sgoetz stsaft jeremymiller GeschwindLab
	Analysis of Variance for Gene Expression Microarray Data [My Copy] Journal of Computational Biology, Vol. 7, No. 6. (December 2000), pp. 819-837. by M. Kathleen Kerr, Mitchell Martin, Gary A. Churchill posted to analysis microarray variance by pengchy on 2008-10-12 11:24:06 as along with 4 people and 1 group kentz daveGerrard klo vertikalist BTS-PT-AS-CS
	Novel and simple transformation algorithm for combining microarray data sets. [My Copy] BMC bioinformatics, Vol. 8 (25 June 2007), 218. by Ki-Yeol Y. Kim, Dong Hyuk H. Ki, Ha Jin J. Jeong, Hei-Cheul C. Jeung, Hyun Cheol C. Chung, Sun Young Y. Rha posted to algorithm combinatorial integrate microarray by pengchy on 2008-10-12 08:08:36 as along with 6 people shikin guhjy jfr shigepong fmenolascina GeeSharpMinor
	Transformations for cDNA microarray data. [My Copy] Statistical applications in genetics and molecular biology, Vol. 2 (2003) by X. Cui, M. K. Kerr, G. A. Churchill posted to data_transformation microarray by pengchy on 2008-10-10 12:50:33 as
	Statistical tests for differential expression in cDNA microarray experiments [My Copy] Genome Biology, Vol. 4, No. 4. (2003), 210. by Xiangqin Cui, Gary Churchill posted to differenial_expression microarray statistics by pengchy on 2008-10-10 12:43:15 as along with 6 people phoenixzxl stsaft egreenfest heliopais waszak shikin
	Fundamentals of experimental design for cDNA microarrays [My Copy] Nature Genetics, Vol. 32 Suppl (01 December 2002), pp. 490-495. by Gary A. Churchill posted to experimental_design microarray review by pengchy on 2008-10-10 12:11:10 as along with 3 people stharward kittipat stsaft
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted to commentary comparative_analysis microarray by pengchy on 2008-10-10 06:37:23 as along with 18 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies kentsis jfr jdiggans qmwwallace cberry shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Normalization and quantification of differential expression in gene expression microarrays. [My Copy] Brief Bioinform, Vol. 7, No. 2. (June 2006), pp. 166-177. by C. Steinhoff, M. Vingron posted to differenial_expression microarray normalization by pengchy on 2008-10-09 07:02:30 as along with 2 people jfr daforerog
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted to microarray ppi predict by pengchy on 2008-10-09 06:47:24 as along with 12 people jperkins kiekyon jfr cgaugain guhjy saket iris_2001 natstreet grahamc phoenixzxl neils renatomilani
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei Keat K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to comparative_analysis microarray normalization by pengchy on 2008-10-09 05:49:15 as along with 12 people jperkins jeremymiller lawraga bertelsen frohike huiminC dubhelix giovenko aramesh2 shigepong ghattem heliopais
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2952-2954. by Chen, Xiaohui, Chen, Ming, Ning, Kaida posted to bayes_network microarray network r_package regulate_network by pengchy on 2008-10-09 04:10:21 as along with 3 people guhjy jhatrimatri srp33
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to co-expression human microarray by pengchy on 2008-10-08 01:49:47 as along with 17 people and 2 groups sficklin cabbagezs cswinburne jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene

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microrna	73
microarray	37
review	37
network	29
software	25
genome	22
predict	21
target	17
comparative_analysis	16
co-expression	15
human	15
method	13
database	12
deep-sequencing	12
evolution	12
evaluate	9
model	9
next-generation-sequencing	9
mirna	8
transcriptional_factor	8
algorithm	7
sequencing	7
analysis	6
combinatorial	6
conservation	6
functional_inference	6
promoter	6
small_rna	6
alternative-splicing	5
comparative_genomics	5
drug-discovery	5
how_do_research	5
integrate	5
r	5
snp	5
cluster	4
cnv	4
disease	4
drosophila	4
gwas	4
module	4
statistics	4
systems_biology	4
assembly	3
biochemical_method	3
bioconductor	3
cancer	3
commentary	3
differenial_expression	3
est	3
expression-profiles	3
mechanism	3
motif	3
ncrna	3
pathway	3
perspective	3
phylogenetic	3
proteomics	3
rna-seq	3
sequence_map	3
transcriptional_regulatory	3
transcriptome	3
visualization	3
annotation	2
antisense	2
bayes	2
bayes_network	2
bioinformatic	2
classification	2
computational	2
data-integration	2
expression	2
gene-expression	2
gene-set-enrichment	2
genom	2
interaction	2
metabolomics	2
missing-value	2
mouse	2
msa	2
muscle	2
normalization	2
p53	2
parallel	2
personal	2
plant	2
ppi	2
profiling	2
regulate_network	2
repression	2
r_package	2
semantic_similarity	2
short_read_assembler	2
species-specific	2
targetscan	2
tissue-specific	2
webserver	2
2-de	1
3d	1
activation	1
ago	1
alignment	1
arabidopsis	1
array	1
behavior	1
binding_sites	1
biomedicine	1
biowiki	1
blood-pressure	1
cell-free	1
china	1
chip-chip	1
citation	1
clinical	1
clustering	1
cog	1
complex	1
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coregulation	1
co-regulation	1
cross-species	1
data_mining	1
data_transformation	1
dchip	1
deletion	1
design	1
display	1
downregulation	1
duplication	1
editorial	1
encode	1
entropy	1
epigenome	1
exactfdr	1
example	1
exon-array	1
experimental_approach	1
experimental_design	1
fantom4	1
fdr	1
fragile_sites	1
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gene-ontology	1
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genetic-interaction	1
genome-annotation	1
genomic_organization	1
gsea	1
gui	1
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immunoprecipitation	1
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phastcons	1
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porcine	1
postdoctoral	1
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solexa	1
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structure	1
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survey	1
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svd	1
svm	1
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technology	1
tiling_array	1
time-course	1
transcription	1
trna	1
ucr	1
unsequenced	1
variance	1
venn-diagram	1
visualisation	1
web	1
web_tool	1
wgcna	1
wheat	1
yeast	1

pengchy's microarray [37 articles] Export

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